RNA–Protein interactions for RNA: ENST00000558752.1

RPL28-206, Transcript of ribosomal protein L28, humanhuman

TSL 3 BASIC

Gene RPL28, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-206ENST00000558752 NISCHQ9Y2I1 1504 aa38■■■■□ 3.67
RPL28-206ENST00000558752 ABCC9O60706 1549 aa34.54■■■■□ 3.12
RPL28-206ENST00000558752 CCDC180Q9P1Z9 1646 aa34.21■■■■□ 3.07
RPL28-206ENST00000558752 DNAJC5BQ9UF47 199 aa33.08■■■□□ 2.89
RPL28-206ENST00000558752 RB1CC1Q8TDY2 1594 aa32.67■■■□□ 2.82
RPL28-206ENST00000558752 NACADO15069 1562 aa32.41■■■□□ 2.78
RPL28-206ENST00000558752 DCAF8L2P0C7V8 631 aa32.25■■■□□ 2.75
RPL28-206ENST00000558752 PABPN1Q86U42 306 aaKnown RBP eCLIP32.18■■■□□ 2.74
RPL28-206ENST00000558752 MYO15BQ96JP2 1530 aa31.93■■■□□ 2.7
RPL28-206ENST00000558752 UNC13AQ9UPW8 1703 aa31.78■■■□□ 2.68
RPL28-206ENST00000558752 BICRAQ9NZM4 1560 aa31.64■■■□□ 2.66
RPL28-206ENST00000558752 ZCCHC6Q5VYS8 1495 aaKnown RBP31.44■■■□□ 2.62
RPL28-206ENST00000558752 DCAF1Q9Y4B6 1507 aa31.43■■■□□ 2.62
RPL28-206ENST00000558752 SHROOM4Q9ULL8 1493 aa31.33■■■□□ 2.61
RPL28-206ENST00000558752 CECR2Q9BXF3 1484 aa31.11■■■□□ 2.57
RPL28-206ENST00000558752 SCRIBQ14160 1630 aa31.08■■■□□ 2.57
RPL28-206ENST00000558752 CC2D2AQ9P2K1 1620 aa31.06■■■□□ 2.56
RPL28-206ENST00000558752 EIF4G1Q04637 1599 aaKnown RBP30.89■■■□□ 2.54
RPL28-206ENST00000558752 DNAJC5Q9H3Z4 198 aa30.6■■■□□ 2.49
RPL28-206ENST00000558752 NCAPD3P42695 1498 aa29.91■■■□□ 2.38
RPL28-206ENST00000558752 CUX2O14529 1486 aa29.81■■■□□ 2.36
RPL28-206ENST00000558752 ATAD2BQ9ULI0 1458 aa29.75■■■□□ 2.35
RPL28-206ENST00000558752 ERCC6Q03468 1493 aa29.74■■■□□ 2.35
RPL28-206ENST00000558752 SMARCA2P51531 1590 aa29.73■■■□□ 2.35
RPL28-206ENST00000558752 SMARCA4P51532 1647 aa29.67■■■□□ 2.34
RPL28-206ENST00000558752 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
RPL28-206ENST00000558752 BAZ1AQ9NRL2 1556 aaPredicted RBP29.56■■■□□ 2.32
RPL28-206ENST00000558752 NESP48681 1621 aa29.55■■■□□ 2.32
RPL28-206ENST00000558752 BAZ1BQ9UIG0 1483 aaKnown RBP29.5■■■□□ 2.31
RPL28-206ENST00000558752 PEG3Q9GZU2 1588 aa29.4■■■□□ 2.3
RPL28-206ENST00000558752 LAMC3Q9Y6N6 1575 aa29.26■■■□□ 2.28
RPL28-206ENST00000558752 MROH2BQ7Z745 1585 aa29.22■■■□□ 2.27
RPL28-206ENST00000558752 THOC2Q8NI27 1593 aaKnown RBP29.2■■■□□ 2.26
RPL28-206ENST00000558752 PDS5BQ9NTI5 1447 aa29.17■■■□□ 2.26
RPL28-206ENST00000558752 TRIM41Q8WV44 630 aa29.1■■■□□ 2.25
RPL28-206ENST00000558752 KIF21AQ7Z4S6 1674 aa29.01■■■□□ 2.23
RPL28-206ENST00000558752 CADPSQ9ULU8 1353 aa29.01■■■□□ 2.23
RPL28-206ENST00000558752 WIZO95785 1651 aa28.86■■■□□ 2.21
RPL28-206ENST00000558752 MRC2Q9UBG0 1479 aa28.85■■■□□ 2.21
RPL28-206ENST00000558752 WDR62O43379 1518 aa28.75■■■□□ 2.19
RPL28-206ENST00000558752 CEP164Q9UPV0 1460 aa28.72■■■□□ 2.19
RPL28-206ENST00000558752 FANCD2Q9BXW9 1451 aa28.65■■■□□ 2.18
RPL28-206ENST00000558752 CFTRP13569 1480 aa28.61■■■□□ 2.17
RPL28-206ENST00000558752 RSF1Q96T23 1441 aaPredicted RBP28.6■■■□□ 2.17
RPL28-206ENST00000558752 TOP2AP11388 1531 aaKnown RBP28.55■■■□□ 2.16
RPL28-206ENST00000558752 OSCARQ8IYS5 282 aa28.47■■■□□ 2.15
RPL28-206ENST00000558752 URB2Q14146 1524 aaKnown RBP28.35■■■□□ 2.13
RPL28-206ENST00000558752 PRDM2Q13029 1718 aa28.29■■■□□ 2.12
RPL28-206ENST00000558752 CCDC88BA6NC98 1476 aa28.21■■■□□ 2.11
RPL28-206ENST00000558752 IFT140Q96RY7 1462 aa28.16■■■□□ 2.1
RPL28-206ENST00000558752 ABCC8Q09428 1581 aa28.13■■■□□ 2.09
RPL28-206ENST00000558752 RIMBP3CA6NJZ7 1639 aa28.12■■■□□ 2.09
RPL28-206ENST00000558752 RIMBP3BA6NNM3 1639 aa28.12■■■□□ 2.09
RPL28-206ENST00000558752 RIMBP3Q9UFD9 1639 aa28.12■■■□□ 2.09
RPL28-206ENST00000558752 ZNF608Q9ULD9 1512 aaPredicted RBP28.11■■■□□ 2.09
RPL28-206ENST00000558752 TOPBP1Q92547 1522 aa28.07■■■□□ 2.08
RPL28-206ENST00000558752 ARHGEF11O15085 1522 aa28■■■□□ 2.07
RPL28-206ENST00000558752 DNMBPQ6XZF7 1577 aa27.97■■■□□ 2.07
RPL28-206ENST00000558752 CYB5RLQ6IPT4 315 aa27.94■■■□□ 2.06
RPL28-206ENST00000558752 EIF4G3O43432 1585 aaKnown RBP27.88■■■□□ 2.05
RPL28-206ENST00000558752 AQRO60306 1485 aaKnown RBP eCLIP27.79■■■□□ 2.043e-8■■■■□ 23.2
RPL28-206ENST00000558752 TARBP1Q13395 1621 aaKnown RBP27.78■■■□□ 2.04
RPL28-206ENST00000558752 TRHP20396 242 aaPredicted RBP27.77■■■□□ 2.04
RPL28-206ENST00000558752 POLA1P09884 1462 aaPredicted RBP27.76■■■□□ 2.03
RPL28-206ENST00000558752 FBLN2P98095 1184 aa27.74■■■□□ 2.03
RPL28-206ENST00000558752 ARAP1Q96P48 1450 aa27.74■■■□□ 2.03
RPL28-206ENST00000558752 SOGA1O94964 1423 aa27.69■■■□□ 2.02
RPL28-206ENST00000558752 CHD1O14646 1710 aa27.69■■■□□ 2.02
RPL28-206ENST00000558752 RAD54L2Q9Y4B4 1467 aa27.64■■■□□ 2.01
RPL28-206ENST00000558752 WDR97A6NE52 1622 aa27.63■■■□□ 2.01
RPL28-206ENST00000558752 TDRD9Q8NDG6 1382 aaKnown RBP27.6■■■□□ 2.01
RPL28-206ENST00000558752 FGD5Q6ZNL6 1462 aa27.57■■■□□ 2
RPL28-206ENST00000558752 CHMP7Q8WUX9 453 aaPredicted RBP27.54■■■□□ 2
RPL28-206ENST00000558752 SNAPC4Q5SXM2 1469 aa27.51■■□□□ 1.99
RPL28-206ENST00000558752 MAGI1Q96QZ7 1491 aaPredicted RBP27.5■■□□□ 1.99
RPL28-206ENST00000558752 CUX1P39880 1505 aa27.47■■□□□ 1.99
RPL28-206ENST00000558752 GRIN2BQ13224 1484 aa27.47■■□□□ 1.99
RPL28-206ENST00000558752 SYNJ1O43426 1573 aa27.45■■□□□ 1.99
RPL28-206ENST00000558752 SYNJ2O15056 1496 aa27.39■■□□□ 1.98
RPL28-206ENST00000558752 CLASP1Q7Z460 1538 aa27.38■■□□□ 1.97
RPL28-206ENST00000558752 GAPVD1Q14C86 1478 aa27.34■■□□□ 1.97
RPL28-206ENST00000558752 AEBP2Q6ZN18 517 aaPredicted RBP27.29■■□□□ 1.96
RPL28-206ENST00000558752 PBRM1Q86U86 1689 aa27.27■■□□□ 1.96
RPL28-206ENST00000558752 ABCA10Q8WWZ4 1543 aa27.27■■□□□ 1.96
RPL28-206ENST00000558752 SUPT5HO00267 1087 aaKnown RBP27.27■■□□□ 1.96
RPL28-206ENST00000558752 ABCA5Q8WWZ7 1642 aa27.19■■□□□ 1.94
RPL28-206ENST00000558752 WRNQ14191 1432 aaPredicted RBP eCLIP27.18■■□□□ 1.94
RPL28-206ENST00000558752 GRIN2AQ12879 1464 aa27.08■■□□□ 1.93
RPL28-206ENST00000558752 ERCC6L2Q5T890 1561 aa27.05■■□□□ 1.92
RPL28-206ENST00000558752 TOP2BQ02880 1626 aa27.04■■□□□ 1.92
RPL28-206ENST00000558752 BIVM-ERCC5R4GMW8 1640 aa27.02■■□□□ 1.92
RPL28-206ENST00000558752 ADAMTS12P58397 1594 aa27.01■■□□□ 1.91
RPL28-206ENST00000558752 FHAD1B1AJZ9 1412 aa27■■□□□ 1.91
RPL28-206ENST00000558752 NUP160Q12769 1436 aa26.99■■□□□ 1.91
RPL28-206ENST00000558752 ERICH3Q5RHP9 1530 aa26.95■■□□□ 1.91
RPL28-206ENST00000558752 CEP170Q5SW79 1584 aa26.92■■□□□ 1.9
RPL28-206ENST00000558752 SHROOM2Q13796 1616 aa26.87■■□□□ 1.89
RPL28-206ENST00000558752 JPH4Q96JJ6 628 aa26.78■■□□□ 1.88
RPL28-206ENST00000558752 PRG4Q92954 1404 aaPredicted RBP26.77■■□□□ 1.88
RPL28-206ENST00000558752 NPM1P06748 294 aaKnown RBP eCLIP26.7■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms