RNA–Protein interactions for RNA: ENST00000558560.1

RMDN3-206, Transcript of regulator of microtubule dynamics 3, humanhuman

TSL 5

Gene RMDN3, Length 604 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RMDN3-206ENST00000558560 NISCHQ9Y2I1 1504 aa46.64■■■■■ 5.06
RMDN3-206ENST00000558560 CCDC180Q9P1Z9 1646 aa41.95■■■■■ 4.31
RMDN3-206ENST00000558560 ABCC9O60706 1549 aa41.69■■■■■ 4.27
RMDN3-206ENST00000558560 RB1CC1Q8TDY2 1594 aa39.87■■■■□ 3.97
RMDN3-206ENST00000558560 NACADO15069 1562 aa39.63■■■■□ 3.94
RMDN3-206ENST00000558560 MYO15BQ96JP2 1530 aa39.19■■■■□ 3.86
RMDN3-206ENST00000558560 DCAF8L2P0C7V8 631 aa39.16■■■■□ 3.86
RMDN3-206ENST00000558560 DNAJC5BQ9UF47 199 aa39.08■■■■□ 3.85
RMDN3-206ENST00000558560 UNC13AQ9UPW8 1703 aa38.94■■■■□ 3.82
RMDN3-206ENST00000558560 PABPN1Q86U42 306 aaKnown RBP eCLIP38.77■■■■□ 3.8
RMDN3-206ENST00000558560 DCAF1Q9Y4B6 1507 aa38.65■■■■□ 3.78
RMDN3-206ENST00000558560 ZCCHC6Q5VYS8 1495 aaKnown RBP38.64■■■■□ 3.78
RMDN3-206ENST00000558560 BICRAQ9NZM4 1560 aa38.64■■■■□ 3.78
RMDN3-206ENST00000558560 SHROOM4Q9ULL8 1493 aa38.32■■■■□ 3.72
RMDN3-206ENST00000558560 SCRIBQ14160 1630 aa38.01■■■■□ 3.67
RMDN3-206ENST00000558560 CC2D2AQ9P2K1 1620 aa37.75■■■■□ 3.63
RMDN3-206ENST00000558560 EIF4G1Q04637 1599 aaKnown RBP37.69■■■■□ 3.62
RMDN3-206ENST00000558560 CECR2Q9BXF3 1484 aa37.63■■■■□ 3.61
RMDN3-206ENST00000558560 NCAPD3P42695 1498 aa36.56■■■■□ 3.44
RMDN3-206ENST00000558560 ATAD2BQ9ULI0 1458 aa36.39■■■■□ 3.42
RMDN3-206ENST00000558560 SMARCA2P51531 1590 aa36.36■■■■□ 3.41
RMDN3-206ENST00000558560 SMARCA4P51532 1647 aa36.36■■■■□ 3.41
RMDN3-206ENST00000558560 HMGXB3Q12766 1538 aa36.3■■■■□ 3.4
RMDN3-206ENST00000558560 BAZ1AQ9NRL2 1556 aaPredicted RBP36.23■■■■□ 3.39
RMDN3-206ENST00000558560 CUX2O14529 1486 aa36.11■■■■□ 3.37
RMDN3-206ENST00000558560 PEG3Q9GZU2 1588 aa36.1■■■■□ 3.37
RMDN3-206ENST00000558560 ERCC6Q03468 1493 aa36.05■■■■□ 3.36
RMDN3-206ENST00000558560 BAZ1BQ9UIG0 1483 aaKnown RBP36.03■■■■□ 3.36
RMDN3-206ENST00000558560 DNAJC5Q9H3Z4 198 aa36.02■■■■□ 3.36
RMDN3-206ENST00000558560 MROH2BQ7Z745 1585 aa35.85■■■■□ 3.33
RMDN3-206ENST00000558560 NESP48681 1621 aa35.81■■■■□ 3.32
RMDN3-206ENST00000558560 LAMC3Q9Y6N6 1575 aa35.75■■■■□ 3.31
RMDN3-206ENST00000558560 THOC2Q8NI27 1593 aaKnown RBP35.54■■■■□ 3.28
RMDN3-206ENST00000558560 PDS5BQ9NTI5 1447 aa35.53■■■■□ 3.28
RMDN3-206ENST00000558560 KIF21AQ7Z4S6 1674 aa35.43■■■■□ 3.26
RMDN3-206ENST00000558560 WIZO95785 1651 aa35.43■■■■□ 3.26
RMDN3-206ENST00000558560 CADPSQ9ULU8 1353 aa35.41■■■■□ 3.26
RMDN3-206ENST00000558560 MRC2Q9UBG0 1479 aa35.16■■■■□ 3.22
RMDN3-206ENST00000558560 RSF1Q96T23 1441 aaPredicted RBP35.15■■■■□ 3.22
RMDN3-206ENST00000558560 WDR62O43379 1518 aa35.11■■■■□ 3.21
RMDN3-206ENST00000558560 TOP2AP11388 1531 aaKnown RBP35.05■■■■□ 3.2
RMDN3-206ENST00000558560 CFTRP13569 1480 aa35.03■■■■□ 3.2
RMDN3-206ENST00000558560 CEP164Q9UPV0 1460 aa35.03■■■■□ 3.2
RMDN3-206ENST00000558560 FANCD2Q9BXW9 1451 aa34.97■■■■□ 3.19
RMDN3-206ENST00000558560 PRDM2Q13029 1718 aa34.75■■■■□ 3.15
RMDN3-206ENST00000558560 URB2Q14146 1524 aaKnown RBP34.65■■■■□ 3.14
RMDN3-206ENST00000558560 CCDC88BA6NC98 1476 aa34.6■■■■□ 3.13
RMDN3-206ENST00000558560 OSCARQ8IYS5 282 aa34.42■■■■□ 3.1
RMDN3-206ENST00000558560 ABCC8Q09428 1581 aa34.39■■■■□ 3.1
RMDN3-206ENST00000558560 IFT140Q96RY7 1462 aa34.37■■■■□ 3.09
RMDN3-206ENST00000558560 TOPBP1Q92547 1522 aa34.32■■■■□ 3.08
RMDN3-206ENST00000558560 TRIM41Q8WV44 630 aa34.26■■■■□ 3.08
RMDN3-206ENST00000558560 DNMBPQ6XZF7 1577 aa34.23■■■■□ 3.07
RMDN3-206ENST00000558560 ZNF608Q9ULD9 1512 aaPredicted RBP34.19■■■■□ 3.06
RMDN3-206ENST00000558560 EIF4G3O43432 1585 aaKnown RBP34.05■■■■□ 3.04
RMDN3-206ENST00000558560 TARBP1Q13395 1621 aaKnown RBP34.04■■■■□ 3.04
RMDN3-206ENST00000558560 POLA1P09884 1462 aaPredicted RBP33.95■■■■□ 3.03
RMDN3-206ENST00000558560 RIMBP3CA6NJZ7 1639 aa33.92■■■■□ 3.02
RMDN3-206ENST00000558560 RIMBP3BA6NNM3 1639 aa33.92■■■■□ 3.02
RMDN3-206ENST00000558560 RIMBP3Q9UFD9 1639 aa33.92■■■■□ 3.02
RMDN3-206ENST00000558560 AQRO60306 1485 aaKnown RBP eCLIP33.88■■■■□ 3.012e-6■■■■■ 30.7
RMDN3-206ENST00000558560 WDR97A6NE52 1622 aa33.84■■■■□ 3.01
RMDN3-206ENST00000558560 CHD1O14646 1710 aa33.82■■■■□ 3
RMDN3-206ENST00000558560 SOGA1O94964 1423 aa33.81■■■■□ 3
RMDN3-206ENST00000558560 ARHGEF11O15085 1522 aa33.81■■■■□ 3
RMDN3-206ENST00000558560 RAD54L2Q9Y4B4 1467 aa33.76■■■□□ 2.99
RMDN3-206ENST00000558560 FGD5Q6ZNL6 1462 aa33.72■■■□□ 2.99
RMDN3-206ENST00000558560 CUX1P39880 1505 aa33.69■■■□□ 2.98
RMDN3-206ENST00000558560 TDRD9Q8NDG6 1382 aaKnown RBP33.67■■■□□ 2.98
RMDN3-206ENST00000558560 FBLN2P98095 1184 aa33.62■■■□□ 2.97
RMDN3-206ENST00000558560 MAGI1Q96QZ7 1491 aaPredicted RBP33.59■■■□□ 2.97
RMDN3-206ENST00000558560 GRIN2BQ13224 1484 aa33.56■■■□□ 2.96
RMDN3-206ENST00000558560 SNAPC4Q5SXM2 1469 aa33.56■■■□□ 2.96
RMDN3-206ENST00000558560 CYB5RLQ6IPT4 315 aa33.51■■■□□ 2.95
RMDN3-206ENST00000558560 CHMP7Q8WUX9 453 aaPredicted RBP33.47■■■□□ 2.95
RMDN3-206ENST00000558560 SYNJ1O43426 1573 aa33.47■■■□□ 2.95
RMDN3-206ENST00000558560 SUPT5HO00267 1087 aaKnown RBP33.46■■■□□ 2.95
RMDN3-206ENST00000558560 ARAP1Q96P48 1450 aa33.45■■■□□ 2.95
RMDN3-206ENST00000558560 CLASP1Q7Z460 1538 aa33.45■■■□□ 2.95
RMDN3-206ENST00000558560 SYNJ2O15056 1496 aa33.44■■■□□ 2.94
RMDN3-206ENST00000558560 ABCA10Q8WWZ4 1543 aa33.43■■■□□ 2.94
RMDN3-206ENST00000558560 GAPVD1Q14C86 1478 aa33.41■■■□□ 2.94
RMDN3-206ENST00000558560 PBRM1Q86U86 1689 aa33.4■■■□□ 2.94
RMDN3-206ENST00000558560 ABCA5Q8WWZ7 1642 aa33.35■■■□□ 2.93
RMDN3-206ENST00000558560 WRNQ14191 1432 aaPredicted RBP eCLIP33.28■■■□□ 2.92
RMDN3-206ENST00000558560 BIVM-ERCC5R4GMW8 1640 aa33.24■■■□□ 2.91
RMDN3-206ENST00000558560 TOP2BQ02880 1626 aa33.24■■■□□ 2.91
RMDN3-206ENST00000558560 TRHP20396 242 aaPredicted RBP33.11■■■□□ 2.89
RMDN3-206ENST00000558560 GRIN2AQ12879 1464 aa33.1■■■□□ 2.89
RMDN3-206ENST00000558560 ADAMTS12P58397 1594 aa33.07■■■□□ 2.88
RMDN3-206ENST00000558560 FHAD1B1AJZ9 1412 aa33.02■■■□□ 2.88
RMDN3-206ENST00000558560 ERICH3Q5RHP9 1530 aa33.02■■■□□ 2.88
RMDN3-206ENST00000558560 NUP160Q12769 1436 aa33.02■■■□□ 2.88
RMDN3-206ENST00000558560 CEP170Q5SW79 1584 aa32.94■■■□□ 2.86
RMDN3-206ENST00000558560 SHROOM2Q13796 1616 aa32.89■■■□□ 2.86
RMDN3-206ENST00000558560 ERCC6L2Q5T890 1561 aa32.81■■■□□ 2.84
RMDN3-206ENST00000558560 JPH4Q96JJ6 628 aa32.66■■■□□ 2.82
RMDN3-206ENST00000558560 PRG4Q92954 1404 aaPredicted RBP32.64■■■□□ 2.82
RMDN3-206ENST00000558560 RUSC2Q8N2Y8 1516 aa32.61■■■□□ 2.81
RMDN3-206ENST00000558560 KIF27Q86VH2 1401 aa32.58■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms