RNA–Protein interactions for RNA: ENST00000557726.1

RDH11-211, Transcript of retinol dehydrogenase 11, humanhuman

TSL 3

Gene RDH11, Length 621 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-211ENST00000557726 NISCHQ9Y2I1 1504 aa31.87■■■□□ 2.69
RDH11-211ENST00000557726 ABCC9O60706 1549 aa28.64■■■□□ 2.17
RDH11-211ENST00000557726 CCDC180Q9P1Z9 1646 aa28.61■■■□□ 2.17
RDH11-211ENST00000557726 RB1CC1Q8TDY2 1594 aa27.25■■□□□ 1.95
RDH11-211ENST00000557726 NACADO15069 1562 aa27.05■■□□□ 1.92
RDH11-211ENST00000557726 DCAF8L2P0C7V8 631 aa27.03■■□□□ 1.92
RDH11-211ENST00000557726 DNAJC5BQ9UF47 199 aa26.82■■□□□ 1.88
RDH11-211ENST00000557726 PABPN1Q86U42 306 aaKnown RBP eCLIP26.68■■□□□ 1.86
RDH11-211ENST00000557726 UNC13AQ9UPW8 1703 aa26.64■■□□□ 1.85
RDH11-211ENST00000557726 MYO15BQ96JP2 1530 aa26.63■■□□□ 1.85
RDH11-211ENST00000557726 BICRAQ9NZM4 1560 aa26.41■■□□□ 1.82
RDH11-211ENST00000557726 ZCCHC6Q5VYS8 1495 aaKnown RBP26.4■■□□□ 1.82
RDH11-211ENST00000557726 DCAF1Q9Y4B6 1507 aa26.3■■□□□ 1.8
RDH11-211ENST00000557726 SCRIBQ14160 1630 aa26.1■■□□□ 1.77
RDH11-211ENST00000557726 SHROOM4Q9ULL8 1493 aa26.05■■□□□ 1.76
RDH11-211ENST00000557726 CC2D2AQ9P2K1 1620 aa25.85■■□□□ 1.73
RDH11-211ENST00000557726 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
RDH11-211ENST00000557726 EIF4G1Q04637 1599 aaKnown RBP25.78■■□□□ 1.72
RDH11-211ENST00000557726 NCAPD3P42695 1498 aa24.95■■□□□ 1.58
RDH11-211ENST00000557726 ATAD2BQ9ULI0 1458 aa24.89■■□□□ 1.57
RDH11-211ENST00000557726 SMARCA4P51532 1647 aa24.88■■□□□ 1.57
RDH11-211ENST00000557726 SMARCA2P51531 1590 aa24.84■■□□□ 1.57
RDH11-211ENST00000557726 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
RDH11-211ENST00000557726 ERCC6Q03468 1493 aa24.76■■□□□ 1.55
RDH11-211ENST00000557726 BAZ1AQ9NRL2 1556 aaPredicted RBP24.76■■□□□ 1.55
RDH11-211ENST00000557726 BAZ1BQ9UIG0 1483 aaKnown RBP24.68■■□□□ 1.54
RDH11-211ENST00000557726 CUX2O14529 1486 aa24.65■■□□□ 1.54
RDH11-211ENST00000557726 DNAJC5Q9H3Z4 198 aa24.64■■□□□ 1.54
RDH11-211ENST00000557726 PEG3Q9GZU2 1588 aa24.59■■□□□ 1.53
RDH11-211ENST00000557726 NESP48681 1621 aa24.59■■□□□ 1.53
RDH11-211ENST00000557726 MROH2BQ7Z745 1585 aa24.56■■□□□ 1.52
RDH11-211ENST00000557726 LAMC3Q9Y6N6 1575 aa24.41■■□□□ 1.5
RDH11-211ENST00000557726 THOC2Q8NI27 1593 aaKnown RBP24.31■■□□□ 1.48
RDH11-211ENST00000557726 WIZO95785 1651 aa24.3■■□□□ 1.48
RDH11-211ENST00000557726 PDS5BQ9NTI5 1447 aa24.29■■□□□ 1.48
RDH11-211ENST00000557726 KIF21AQ7Z4S6 1674 aa24.29■■□□□ 1.48
RDH11-211ENST00000557726 CADPSQ9ULU8 1353 aa24.22■■□□□ 1.47
RDH11-211ENST00000557726 MRC2Q9UBG0 1479 aa24.07■■□□□ 1.44
RDH11-211ENST00000557726 RSF1Q96T23 1441 aaPredicted RBP24.06■■□□□ 1.44
RDH11-211ENST00000557726 CEP164Q9UPV0 1460 aa23.99■■□□□ 1.43
RDH11-211ENST00000557726 WDR62O43379 1518 aa23.98■■□□□ 1.43
RDH11-211ENST00000557726 TOP2AP11388 1531 aaKnown RBP23.97■■□□□ 1.43
RDH11-211ENST00000557726 FANCD2Q9BXW9 1451 aa23.95■■□□□ 1.42
RDH11-211ENST00000557726 CFTRP13569 1480 aa23.92■■□□□ 1.42
RDH11-211ENST00000557726 URB2Q14146 1524 aaKnown RBP23.74■■□□□ 1.39
RDH11-211ENST00000557726 PRDM2Q13029 1718 aa23.73■■□□□ 1.39
RDH11-211ENST00000557726 CCDC88BA6NC98 1476 aa23.7■■□□□ 1.38
RDH11-211ENST00000557726 TRIM41Q8WV44 630 aa23.64■■□□□ 1.37
RDH11-211ENST00000557726 OSCARQ8IYS5 282 aa23.58■■□□□ 1.37
RDH11-211ENST00000557726 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
RDH11-211ENST00000557726 TOPBP1Q92547 1522 aa23.49■■□□□ 1.35
RDH11-211ENST00000557726 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
RDH11-211ENST00000557726 ZNF608Q9ULD9 1512 aaPredicted RBP23.45■■□□□ 1.34
RDH11-211ENST00000557726 DNMBPQ6XZF7 1577 aa23.41■■□□□ 1.34
RDH11-211ENST00000557726 EIF4G3O43432 1585 aaKnown RBP23.32■■□□□ 1.32
RDH11-211ENST00000557726 TARBP1Q13395 1621 aaKnown RBP23.26■■□□□ 1.31
RDH11-211ENST00000557726 AQRO60306 1485 aaKnown RBP eCLIP23.25■■□□□ 1.318e-7■■■■■ 28.7
RDH11-211ENST00000557726 POLA1P09884 1462 aaPredicted RBP23.24■■□□□ 1.31
RDH11-211ENST00000557726 RIMBP3CA6NJZ7 1639 aa23.24■■□□□ 1.31
RDH11-211ENST00000557726 RIMBP3BA6NNM3 1639 aa23.24■■□□□ 1.31
RDH11-211ENST00000557726 RIMBP3Q9UFD9 1639 aa23.24■■□□□ 1.31
RDH11-211ENST00000557726 CHD1O14646 1710 aa23.19■■□□□ 1.3
RDH11-211ENST00000557726 RAD54L2Q9Y4B4 1467 aa23.18■■□□□ 1.3
RDH11-211ENST00000557726 FBLN2P98095 1184 aa23.18■■□□□ 1.3
RDH11-211ENST00000557726 SOGA1O94964 1423 aa23.16■■□□□ 1.3
RDH11-211ENST00000557726 ARHGEF11O15085 1522 aa23.16■■□□□ 1.3
RDH11-211ENST00000557726 TDRD9Q8NDG6 1382 aaKnown RBP23.13■■□□□ 1.29
RDH11-211ENST00000557726 FGD5Q6ZNL6 1462 aa23.11■■□□□ 1.29
RDH11-211ENST00000557726 SUPT5HO00267 1087 aaKnown RBP23.1■■□□□ 1.29
RDH11-211ENST00000557726 CUX1P39880 1505 aa23.08■■□□□ 1.29
RDH11-211ENST00000557726 CYB5RLQ6IPT4 315 aa23.04■■□□□ 1.28
RDH11-211ENST00000557726 WDR97A6NE52 1622 aa23.03■■□□□ 1.28
RDH11-211ENST00000557726 SNAPC4Q5SXM2 1469 aa23.02■■□□□ 1.28
RDH11-211ENST00000557726 CHMP7Q8WUX9 453 aaPredicted RBP22.99■■□□□ 1.27
RDH11-211ENST00000557726 GRIN2BQ13224 1484 aa22.96■■□□□ 1.27
RDH11-211ENST00000557726 MAGI1Q96QZ7 1491 aaPredicted RBP22.95■■□□□ 1.26
RDH11-211ENST00000557726 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
RDH11-211ENST00000557726 SYNJ1O43426 1573 aa22.9■■□□□ 1.26
RDH11-211ENST00000557726 PBRM1Q86U86 1689 aa22.88■■□□□ 1.25
RDH11-211ENST00000557726 GAPVD1Q14C86 1478 aa22.88■■□□□ 1.25
RDH11-211ENST00000557726 SYNJ2O15056 1496 aa22.87■■□□□ 1.25
RDH11-211ENST00000557726 CLASP1Q7Z460 1538 aa22.86■■□□□ 1.25
RDH11-211ENST00000557726 ABCA10Q8WWZ4 1543 aa22.83■■□□□ 1.25
RDH11-211ENST00000557726 TRHP20396 242 aaPredicted RBP22.83■■□□□ 1.25
RDH11-211ENST00000557726 ABCA5Q8WWZ7 1642 aa22.79■■□□□ 1.24
RDH11-211ENST00000557726 WRNQ14191 1432 aaPredicted RBP eCLIP22.78■■□□□ 1.24
RDH11-211ENST00000557726 TOP2BQ02880 1626 aa22.72■■□□□ 1.23
RDH11-211ENST00000557726 BIVM-ERCC5R4GMW8 1640 aa22.71■■□□□ 1.23
RDH11-211ENST00000557726 GRIN2AQ12879 1464 aa22.65■■□□□ 1.22
RDH11-211ENST00000557726 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
RDH11-211ENST00000557726 FHAD1B1AJZ9 1412 aa22.59■■□□□ 1.21
RDH11-211ENST00000557726 CEP170Q5SW79 1584 aa22.56■■□□□ 1.2
RDH11-211ENST00000557726 ERICH3Q5RHP9 1530 aa22.56■■□□□ 1.2
RDH11-211ENST00000557726 NUP160Q12769 1436 aa22.56■■□□□ 1.2
RDH11-211ENST00000557726 ERCC6L2Q5T890 1561 aa22.52■■□□□ 1.2
RDH11-211ENST00000557726 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
RDH11-211ENST00000557726 PRG4Q92954 1404 aaPredicted RBP22.39■■□□□ 1.17
RDH11-211ENST00000557726 JPH4Q96JJ6 628 aa22.38■■□□□ 1.17
RDH11-211ENST00000557726 RUSC2Q8N2Y8 1516 aa22.31■■□□□ 1.16
RDH11-211ENST00000557726 KIF27Q86VH2 1401 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms