RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 AEBP2Q6ZN18 517 aaPredicted RBP18.63■□□□□ 0.57
VPS33B-207ENST00000557470 CHIC1Q5VXU3 224 aa17.79■□□□□ 0.44
VPS33B-207ENST00000557470 SENP3Q9H4L4 574 aaPredicted RBP15.77■□□□□ 0.12
VPS33B-207ENST00000557470 PHF23Q9BUL5 403 aaPredicted RBP15.67■□□□□ 0.1
VPS33B-207ENST00000557470 NISCHQ9Y2I1 1504 aa14.92□□□□□ -0.02
VPS33B-207ENST00000557470 FOXD1Q16676 465 aa14.75□□□□□ -0.05
VPS33B-207ENST00000557470 PLPPR3Q6T4P5 718 aa14.26□□□□□ -0.13
VPS33B-207ENST00000557470 PPP6R1Q9UPN7 881 aa13.95□□□□□ -0.18
VPS33B-207ENST00000557470 ADRA2BP18089 450 aa13.91□□□□□ -0.18
VPS33B-207ENST00000557470 PIAS4Q8N2W9 510 aaPredicted RBP13.79□□□□□ -0.2
VPS33B-207ENST00000557470 ABCC9O60706 1549 aa13.66□□□□□ -0.22
VPS33B-207ENST00000557470 MSH5O43196 834 aa13.66□□□□□ -0.22
VPS33B-207ENST00000557470 CCDC180Q9P1Z9 1646 aa13.46□□□□□ -0.26
VPS33B-207ENST00000557470 POTEDQ86YR6 584 aa13.12□□□□□ -0.31
VPS33B-207ENST00000557470 DNAJC5BQ9UF47 199 aa12.98□□□□□ -0.33
VPS33B-207ENST00000557470 RB1CC1Q8TDY2 1594 aa12.9□□□□□ -0.35
VPS33B-207ENST00000557470 NACADO15069 1562 aa12.77□□□□□ -0.37
VPS33B-207ENST00000557470 MAPK8IP2Q13387 824 aaPredicted RBP12.75□□□□□ -0.37
VPS33B-207ENST00000557470 PABPN1Q86U42 306 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS33B-207ENST00000557470 DCAF8L2P0C7V8 631 aa12.67□□□□□ -0.38
VPS33B-207ENST00000557470 SCAF1Q9H7N4 1312 aaKnown RBP12.62□□□□□ -0.39
VPS33B-207ENST00000557470 UNC13AQ9UPW8 1703 aa12.6□□□□□ -0.39
VPS33B-207ENST00000557470 PPP4R3CPQ6ZMV5 832 aa12.56□□□□□ -0.4
VPS33B-207ENST00000557470 DMRT2Q9Y5R5 561 aa12.56□□□□□ -0.4
VPS33B-207ENST00000557470 BICRAQ9NZM4 1560 aa12.55□□□□□ -0.4
VPS33B-207ENST00000557470 MYO15BQ96JP2 1530 aa12.53□□□□□ -0.4
VPS33B-207ENST00000557470 ZCCHC6Q5VYS8 1495 aaKnown RBP12.34□□□□□ -0.43
VPS33B-207ENST00000557470 SHROOM4Q9ULL8 1493 aa12.34□□□□□ -0.43
VPS33B-207ENST00000557470 CC2D2AQ9P2K1 1620 aa12.32□□□□□ -0.44
VPS33B-207ENST00000557470 CECR2Q9BXF3 1484 aa12.32□□□□□ -0.44
VPS33B-207ENST00000557470 DCAF1Q9Y4B6 1507 aa12.31□□□□□ -0.44
VPS33B-207ENST00000557470 SCRIBQ14160 1630 aa12.28□□□□□ -0.44
VPS33B-207ENST00000557470 CNKSR2Q8WXI2 1034 aa12.25□□□□□ -0.45
VPS33B-207ENST00000557470 EIF4G1Q04637 1599 aaKnown RBP12.25□□□□□ -0.45
VPS33B-207ENST00000557470 HOXD11P31277 338 aaPredicted RBP12.15□□□□□ -0.46
VPS33B-207ENST00000557470 RNF216Q9NWF9 866 aaPredicted RBP12.1□□□□□ -0.47
VPS33B-207ENST00000557470 DCAF8L1A6NGE4 600 aa12.06□□□□□ -0.48
VPS33B-207ENST00000557470 NCBP3Q53F19 620 aaKnown RBP12.06□□□□□ -0.48
VPS33B-207ENST00000557470 DNAJC5Q9H3Z4 198 aa12.04□□□□□ -0.48
VPS33B-207ENST00000557470 NPM3O75607 178 aaKnown RBP11.97□□□□□ -0.49
VPS33B-207ENST00000557470 KCNA4P22459 653 aa11.9□□□□□ -0.5
VPS33B-207ENST00000557470 CUX2O14529 1486 aa11.83□□□□□ -0.52
VPS33B-207ENST00000557470 NCAPD3P42695 1498 aa11.8□□□□□ -0.52
VPS33B-207ENST00000557470 ERCC6Q03468 1493 aa11.8□□□□□ -0.52
VPS33B-207ENST00000557470 ATAD2BQ9ULI0 1458 aa11.75□□□□□ -0.53
VPS33B-207ENST00000557470 RNF39Q9H2S5 420 aa11.72□□□□□ -0.53
VPS33B-207ENST00000557470 HMGXB3Q12766 1538 aa11.7□□□□□ -0.54
VPS33B-207ENST00000557470 NESP48681 1621 aa11.69□□□□□ -0.54
VPS33B-207ENST00000557470 SMARCA2P51531 1590 aa11.69□□□□□ -0.54
VPS33B-207ENST00000557470 SMARCA4P51532 1647 aa11.68□□□□□ -0.54
VPS33B-207ENST00000557470 CACNB1Q02641 598 aaPredicted RBP11.65□□□□□ -0.54
VPS33B-207ENST00000557470 BAZ1BQ9UIG0 1483 aaKnown RBP11.63□□□□□ -0.55
VPS33B-207ENST00000557470 THOC2Q8NI27 1593 aaKnown RBP11.6□□□□□ -0.55
VPS33B-207ENST00000557470 BAZ1AQ9NRL2 1556 aaPredicted RBP11.59□□□□□ -0.55
VPS33B-207ENST00000557470 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.58□□□□□ -0.56
VPS33B-207ENST00000557470 PEG3Q9GZU2 1588 aa11.57□□□□□ -0.56
VPS33B-207ENST00000557470 LAMC3Q9Y6N6 1575 aa11.55□□□□□ -0.56
VPS33B-207ENST00000557470 MROH2BQ7Z745 1585 aa11.51□□□□□ -0.57
VPS33B-207ENST00000557470 C1QBPQ07021 282 aaKnown RBP11.51□□□□□ -0.57
VPS33B-207ENST00000557470 KIF21AQ7Z4S6 1674 aa11.51□□□□□ -0.57
VPS33B-207ENST00000557470 PDS5BQ9NTI5 1447 aa11.49□□□□□ -0.57
VPS33B-207ENST00000557470 TRIM41Q8WV44 630 aa11.44□□□□□ -0.58
VPS33B-207ENST00000557470 CADPSQ9ULU8 1353 aa11.43□□□□□ -0.58
VPS33B-207ENST00000557470 MRC2Q9UBG0 1479 aa11.42□□□□□ -0.58
VPS33B-207ENST00000557470 SLC4A2P04920 1241 aa11.41□□□□□ -0.58
VPS33B-207ENST00000557470 WDR62O43379 1518 aa11.4□□□□□ -0.59
VPS33B-207ENST00000557470 U3KPZ7 1027 aaPredicted RBP11.39□□□□□ -0.59
VPS33B-207ENST00000557470 WIZO95785 1651 aa11.35□□□□□ -0.59
VPS33B-207ENST00000557470 CEP164Q9UPV0 1460 aa11.33□□□□□ -0.6
VPS33B-207ENST00000557470 FANCD2Q9BXW9 1451 aa11.31□□□□□ -0.6
VPS33B-207ENST00000557470 CFTRP13569 1480 aa11.27□□□□□ -0.6
VPS33B-207ENST00000557470 OSCARQ8IYS5 282 aa11.26□□□□□ -0.61
VPS33B-207ENST00000557470 URB2Q14146 1524 aaKnown RBP11.24□□□□□ -0.61
VPS33B-207ENST00000557470 SLC4A1APQ9BWU0 796 aaKnown RBP11.23□□□□□ -0.61
VPS33B-207ENST00000557470 SPINK5Q9NQ38 1064 aaPredicted RBP11.21□□□□□ -0.61
VPS33B-207ENST00000557470 TOP2AP11388 1531 aaKnown RBP11.2□□□□□ -0.62
VPS33B-207ENST00000557470 RSF1Q96T23 1441 aaPredicted RBP11.2□□□□□ -0.62
VPS33B-207ENST00000557470 RIMBP3CA6NJZ7 1639 aa11.14□□□□□ -0.63
VPS33B-207ENST00000557470 RIMBP3BA6NNM3 1639 aa11.14□□□□□ -0.63
VPS33B-207ENST00000557470 RIMBP3Q9UFD9 1639 aa11.14□□□□□ -0.63
VPS33B-207ENST00000557470 ZNF608Q9ULD9 1512 aaPredicted RBP11.14□□□□□ -0.63
VPS33B-207ENST00000557470 CAPN15O75808 1086 aa11.13□□□□□ -0.63
VPS33B-207ENST00000557470 IFT140Q96RY7 1462 aa11.12□□□□□ -0.63
VPS33B-207ENST00000557470 PRDM2Q13029 1718 aa11.11□□□□□ -0.63
VPS33B-207ENST00000557470 ARHGEF11O15085 1522 aa11.09□□□□□ -0.63
VPS33B-207ENST00000557470 TOPBP1Q92547 1522 aa11.08□□□□□ -0.64
VPS33B-207ENST00000557470 CCDC88BA6NC98 1476 aa11.07□□□□□ -0.64
VPS33B-207ENST00000557470 EIF4G3O43432 1585 aaKnown RBP11.05□□□□□ -0.64
VPS33B-207ENST00000557470 DSG3P32926 999 aa11.04□□□□□ -0.64
VPS33B-207ENST00000557470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.03□□□□□ -0.64
VPS33B-207ENST00000557470 HNRNPUL2Q1KMD3 747 aaKnown RBP11.03□□□□□ -0.64
VPS33B-207ENST00000557470 MYCNP04198 464 aaPredicted RBP11.01□□□□□ -0.65
VPS33B-207ENST00000557470 TRHP20396 242 aaPredicted RBP11.01□□□□□ -0.65
VPS33B-207ENST00000557470 CYB5RLQ6IPT4 315 aa11.01□□□□□ -0.65
VPS33B-207ENST00000557470 ABCC8Q09428 1581 aa11.01□□□□□ -0.65
VPS33B-207ENST00000557470 DNMBPQ6XZF7 1577 aa11.01□□□□□ -0.65
VPS33B-207ENST00000557470 AQRO60306 1485 aaKnown RBP eCLIP11□□□□□ -0.655e-7■■■■■ 27.6
VPS33B-207ENST00000557470 SAMD1Q6SPF0 538 aaPredicted RBP11□□□□□ -0.65
VPS33B-207ENST00000557470 FOXD4L1Q9NU39 408 aa11□□□□□ -0.65
VPS33B-207ENST00000557470 CHD1O14646 1710 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms