RNA–Protein interactions for RNA: ENST00000557431.5

SLIRP-210, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-210ENST00000557431 NISCHQ9Y2I1 1504 aa35.7■■■■□ 3.31
SLIRP-210ENST00000557431 ABCC9O60706 1549 aa32.32■■■□□ 2.76
SLIRP-210ENST00000557431 CCDC180Q9P1Z9 1646 aa32.15■■■□□ 2.74
SLIRP-210ENST00000557431 RB1CC1Q8TDY2 1594 aa30.62■■■□□ 2.49
SLIRP-210ENST00000557431 DNAJC5BQ9UF47 199 aa30.41■■■□□ 2.46
SLIRP-210ENST00000557431 NACADO15069 1562 aa30.33■■■□□ 2.45
SLIRP-210ENST00000557431 DCAF8L2P0C7V8 631 aa30.23■■■□□ 2.43
SLIRP-210ENST00000557431 UNC13AQ9UPW8 1703 aa30.22■■■□□ 2.43
SLIRP-210ENST00000557431 PABPN1Q86U42 306 aaKnown RBP eCLIP30.04■■■□□ 2.4
SLIRP-210ENST00000557431 BICRAQ9NZM4 1560 aa29.83■■■□□ 2.37
SLIRP-210ENST00000557431 MYO15BQ96JP2 1530 aa29.76■■■□□ 2.35
SLIRP-210ENST00000557431 ZCCHC6Q5VYS8 1495 aaKnown RBP29.57■■■□□ 2.32
SLIRP-210ENST00000557431 SCRIBQ14160 1630 aa29.39■■■□□ 2.3
SLIRP-210ENST00000557431 DCAF1Q9Y4B6 1507 aa29.38■■■□□ 2.29
SLIRP-210ENST00000557431 CC2D2AQ9P2K1 1620 aa29.2■■■□□ 2.27
SLIRP-210ENST00000557431 SHROOM4Q9ULL8 1493 aa29.16■■■□□ 2.26
SLIRP-210ENST00000557431 EIF4G1Q04637 1599 aaKnown RBP29.06■■■□□ 2.24
SLIRP-210ENST00000557431 CECR2Q9BXF3 1484 aa29.05■■■□□ 2.24
SLIRP-210ENST00000557431 SMARCA4P51532 1647 aa27.96■■■□□ 2.07
SLIRP-210ENST00000557431 NCAPD3P42695 1498 aa27.95■■■□□ 2.07
SLIRP-210ENST00000557431 ATAD2BQ9ULI0 1458 aa27.93■■■□□ 2.06
SLIRP-210ENST00000557431 DNAJC5Q9H3Z4 198 aa27.89■■■□□ 2.06
SLIRP-210ENST00000557431 ERCC6Q03468 1493 aa27.85■■■□□ 2.05
SLIRP-210ENST00000557431 SMARCA2P51531 1590 aa27.82■■■□□ 2.04
SLIRP-210ENST00000557431 HMGXB3Q12766 1538 aa27.81■■■□□ 2.04
SLIRP-210ENST00000557431 NESP48681 1621 aa27.77■■■□□ 2.04
SLIRP-210ENST00000557431 CUX2O14529 1486 aa27.76■■■□□ 2.04
SLIRP-210ENST00000557431 BAZ1AQ9NRL2 1556 aaPredicted RBP27.7■■■□□ 2.03
SLIRP-210ENST00000557431 BAZ1BQ9UIG0 1483 aaKnown RBP27.66■■■□□ 2.02
SLIRP-210ENST00000557431 MROH2BQ7Z745 1585 aa27.58■■■□□ 2.01
SLIRP-210ENST00000557431 PEG3Q9GZU2 1588 aa27.58■■■□□ 2.01
SLIRP-210ENST00000557431 KIF21AQ7Z4S6 1674 aa27.51■■□□□ 1.99
SLIRP-210ENST00000557431 THOC2Q8NI27 1593 aaKnown RBP27.51■■□□□ 1.99
SLIRP-210ENST00000557431 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
SLIRP-210ENST00000557431 WIZO95785 1651 aa27.34■■□□□ 1.97
SLIRP-210ENST00000557431 PDS5BQ9NTI5 1447 aa27.18■■□□□ 1.94
SLIRP-210ENST00000557431 CADPSQ9ULU8 1353 aa27.11■■□□□ 1.93
SLIRP-210ENST00000557431 MRC2Q9UBG0 1479 aa27.05■■□□□ 1.92
SLIRP-210ENST00000557431 WDR62O43379 1518 aa27.01■■□□□ 1.91
SLIRP-210ENST00000557431 CEP164Q9UPV0 1460 aa26.93■■□□□ 1.9
SLIRP-210ENST00000557431 FANCD2Q9BXW9 1451 aa26.88■■□□□ 1.89
SLIRP-210ENST00000557431 RSF1Q96T23 1441 aaPredicted RBP26.88■■□□□ 1.89
SLIRP-210ENST00000557431 TOP2AP11388 1531 aaKnown RBP26.85■■□□□ 1.89
SLIRP-210ENST00000557431 CFTRP13569 1480 aa26.8■■□□□ 1.88
SLIRP-210ENST00000557431 PRDM2Q13029 1718 aa26.78■■□□□ 1.88
SLIRP-210ENST00000557431 TRIM41Q8WV44 630 aa26.76■■□□□ 1.87
SLIRP-210ENST00000557431 URB2Q14146 1524 aaKnown RBP26.72■■□□□ 1.87
SLIRP-210ENST00000557431 CCDC88BA6NC98 1476 aa26.54■■□□□ 1.84
SLIRP-210ENST00000557431 OSCARQ8IYS5 282 aa26.44■■□□□ 1.82
SLIRP-210ENST00000557431 ZNF608Q9ULD9 1512 aaPredicted RBP26.44■■□□□ 1.82
SLIRP-210ENST00000557431 TOPBP1Q92547 1522 aa26.39■■□□□ 1.81
SLIRP-210ENST00000557431 RIMBP3CA6NJZ7 1639 aa26.34■■□□□ 1.81
SLIRP-210ENST00000557431 RIMBP3BA6NNM3 1639 aa26.34■■□□□ 1.81
SLIRP-210ENST00000557431 RIMBP3Q9UFD9 1639 aa26.34■■□□□ 1.81
SLIRP-210ENST00000557431 IFT140Q96RY7 1462 aa26.34■■□□□ 1.81
SLIRP-210ENST00000557431 EIF4G3O43432 1585 aaKnown RBP26.32■■□□□ 1.8
SLIRP-210ENST00000557431 DNMBPQ6XZF7 1577 aa26.28■■□□□ 1.8
SLIRP-210ENST00000557431 CHD1O14646 1710 aa26.26■■□□□ 1.79
SLIRP-210ENST00000557431 TARBP1Q13395 1621 aaKnown RBP26.21■■□□□ 1.79
SLIRP-210ENST00000557431 ABCC8Q09428 1581 aa26.17■■□□□ 1.78
SLIRP-210ENST00000557431 ARHGEF11O15085 1522 aa26.16■■□□□ 1.78
SLIRP-210ENST00000557431 AQRO60306 1485 aaKnown RBP eCLIP26.14■■□□□ 1.782e-9■□□□□ 10.8
SLIRP-210ENST00000557431 POLA1P09884 1462 aaPredicted RBP26.11■■□□□ 1.77
SLIRP-210ENST00000557431 RAD54L2Q9Y4B4 1467 aa26.06■■□□□ 1.76
SLIRP-210ENST00000557431 FBLN2P98095 1184 aa25.98■■□□□ 1.75
SLIRP-210ENST00000557431 FGD5Q6ZNL6 1462 aa25.94■■□□□ 1.74
SLIRP-210ENST00000557431 TDRD9Q8NDG6 1382 aaKnown RBP25.94■■□□□ 1.74
SLIRP-210ENST00000557431 CYB5RLQ6IPT4 315 aa25.93■■□□□ 1.74
SLIRP-210ENST00000557431 SOGA1O94964 1423 aa25.92■■□□□ 1.74
SLIRP-210ENST00000557431 CUX1P39880 1505 aa25.92■■□□□ 1.74
SLIRP-210ENST00000557431 ARAP1Q96P48 1450 aa25.91■■□□□ 1.74
SLIRP-210ENST00000557431 SNAPC4Q5SXM2 1469 aa25.89■■□□□ 1.73
SLIRP-210ENST00000557431 WDR97A6NE52 1622 aa25.88■■□□□ 1.73
SLIRP-210ENST00000557431 PBRM1Q86U86 1689 aa25.83■■□□□ 1.73
SLIRP-210ENST00000557431 CLASP1Q7Z460 1538 aa25.78■■□□□ 1.72
SLIRP-210ENST00000557431 SYNJ1O43426 1573 aa25.73■■□□□ 1.71
SLIRP-210ENST00000557431 MAGI1Q96QZ7 1491 aaPredicted RBP25.72■■□□□ 1.71
SLIRP-210ENST00000557431 GRIN2BQ13224 1484 aa25.71■■□□□ 1.71
SLIRP-210ENST00000557431 TRHP20396 242 aaPredicted RBP25.69■■□□□ 1.7
SLIRP-210ENST00000557431 CHMP7Q8WUX9 453 aaPredicted RBP25.69■■□□□ 1.7
SLIRP-210ENST00000557431 SUPT5HO00267 1087 aaKnown RBP25.66■■□□□ 1.7
SLIRP-210ENST00000557431 ABCA5Q8WWZ7 1642 aa25.65■■□□□ 1.7
SLIRP-210ENST00000557431 SYNJ2O15056 1496 aa25.65■■□□□ 1.7
SLIRP-210ENST00000557431 GAPVD1Q14C86 1478 aa25.63■■□□□ 1.69
SLIRP-210ENST00000557431 ABCA10Q8WWZ4 1543 aa25.57■■□□□ 1.68
SLIRP-210ENST00000557431 BIVM-ERCC5R4GMW8 1640 aa25.49■■□□□ 1.67
SLIRP-210ENST00000557431 ERCC6L2Q5T890 1561 aa25.48■■□□□ 1.67
SLIRP-210ENST00000557431 ADAMTS12P58397 1594 aa25.47■■□□□ 1.67
SLIRP-210ENST00000557431 TOP2BQ02880 1626 aa25.45■■□□□ 1.66
SLIRP-210ENST00000557431 CEP170Q5SW79 1584 aa25.44■■□□□ 1.66
SLIRP-210ENST00000557431 GRIN2AQ12879 1464 aa25.42■■□□□ 1.66
SLIRP-210ENST00000557431 WRNQ14191 1432 aaPredicted RBP eCLIP25.38■■□□□ 1.65
SLIRP-210ENST00000557431 SHROOM2Q13796 1616 aa25.3■■□□□ 1.64
SLIRP-210ENST00000557431 NUP160Q12769 1436 aa25.3■■□□□ 1.64
SLIRP-210ENST00000557431 FHAD1B1AJZ9 1412 aa25.25■■□□□ 1.63
SLIRP-210ENST00000557431 ERICH3Q5RHP9 1530 aa25.24■■□□□ 1.63
SLIRP-210ENST00000557431 KIF13AQ9H1H9 1805 aa25.19■■□□□ 1.62
SLIRP-210ENST00000557431 RUSC2Q8N2Y8 1516 aa25.12■■□□□ 1.61
SLIRP-210ENST00000557431 PRG4Q92954 1404 aaPredicted RBP25.1■■□□□ 1.61
SLIRP-210ENST00000557431 JPH4Q96JJ6 628 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms