RNA–Protein interactions for RNA: ENST00000557265.5

SNX6-209, Transcript of sorting nexin 6, humanhuman

TSL 3

Gene SNX6, Length 725 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-209ENST00000557265 NISCHQ9Y2I1 1504 aa31.09■■■□□ 2.57
SNX6-209ENST00000557265 ABCC9O60706 1549 aa28.31■■■□□ 2.12
SNX6-209ENST00000557265 CCDC180Q9P1Z9 1646 aa27.89■■■□□ 2.05
SNX6-209ENST00000557265 DNAJC5BQ9UF47 199 aa26.87■■□□□ 1.89
SNX6-209ENST00000557265 RB1CC1Q8TDY2 1594 aa26.75■■□□□ 1.87
SNX6-209ENST00000557265 DCAF8L2P0C7V8 631 aa26.52■■□□□ 1.84
SNX6-209ENST00000557265 NACADO15069 1562 aa26.51■■□□□ 1.83
SNX6-209ENST00000557265 PABPN1Q86U42 306 aaKnown RBP eCLIP26.4■■□□□ 1.82
SNX6-209ENST00000557265 MYO15BQ96JP2 1530 aa26.06■■□□□ 1.76
SNX6-209ENST00000557265 UNC13AQ9UPW8 1703 aa26.01■■□□□ 1.75
SNX6-209ENST00000557265 BICRAQ9NZM4 1560 aa25.99■■□□□ 1.75
SNX6-209ENST00000557265 ZCCHC6Q5VYS8 1495 aaKnown RBP25.69■■□□□ 1.7
SNX6-209ENST00000557265 DCAF1Q9Y4B6 1507 aa25.63■■□□□ 1.69
SNX6-209ENST00000557265 SHROOM4Q9ULL8 1493 aa25.6■■□□□ 1.69
SNX6-209ENST00000557265 CECR2Q9BXF3 1484 aa25.53■■□□□ 1.68
SNX6-209ENST00000557265 SCRIBQ14160 1630 aa25.48■■□□□ 1.67
SNX6-209ENST00000557265 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
SNX6-209ENST00000557265 EIF4G1Q04637 1599 aaKnown RBP25.38■■□□□ 1.65
SNX6-209ENST00000557265 DNAJC5Q9H3Z4 198 aa24.85■■□□□ 1.57
SNX6-209ENST00000557265 NCAPD3P42695 1498 aa24.54■■□□□ 1.52
SNX6-209ENST00000557265 CUX2O14529 1486 aa24.46■■□□□ 1.51
SNX6-209ENST00000557265 ERCC6Q03468 1493 aa24.46■■□□□ 1.51
SNX6-209ENST00000557265 ATAD2BQ9ULI0 1458 aa24.42■■□□□ 1.5
SNX6-209ENST00000557265 SMARCA2P51531 1590 aa24.29■■□□□ 1.48
SNX6-209ENST00000557265 HMGXB3Q12766 1538 aa24.26■■□□□ 1.47
SNX6-209ENST00000557265 SMARCA4P51532 1647 aa24.26■■□□□ 1.47
SNX6-209ENST00000557265 NESP48681 1621 aa24.24■■□□□ 1.47
SNX6-209ENST00000557265 BAZ1BQ9UIG0 1483 aaKnown RBP24.16■■□□□ 1.46
SNX6-209ENST00000557265 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
SNX6-209ENST00000557265 PEG3Q9GZU2 1588 aa24.02■■□□□ 1.44
SNX6-209ENST00000557265 MROH2BQ7Z745 1585 aa23.97■■□□□ 1.43
SNX6-209ENST00000557265 THOC2Q8NI27 1593 aaKnown RBP23.95■■□□□ 1.42
SNX6-209ENST00000557265 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.42
SNX6-209ENST00000557265 PDS5BQ9NTI5 1447 aa23.91■■□□□ 1.42
SNX6-209ENST00000557265 CADPSQ9ULU8 1353 aa23.81■■□□□ 1.4
SNX6-209ENST00000557265 KIF21AQ7Z4S6 1674 aa23.79■■□□□ 1.4
SNX6-209ENST00000557265 MRC2Q9UBG0 1479 aa23.69■■□□□ 1.38
SNX6-209ENST00000557265 TRIM41Q8WV44 630 aa23.67■■□□□ 1.38
SNX6-209ENST00000557265 WIZO95785 1651 aa23.61■■□□□ 1.37
SNX6-209ENST00000557265 WDR62O43379 1518 aa23.6■■□□□ 1.37
SNX6-209ENST00000557265 CEP164Q9UPV0 1460 aa23.54■■□□□ 1.36
SNX6-209ENST00000557265 FANCD2Q9BXW9 1451 aa23.51■■□□□ 1.35
SNX6-209ENST00000557265 CFTRP13569 1480 aa23.45■■□□□ 1.34
SNX6-209ENST00000557265 RSF1Q96T23 1441 aaPredicted RBP23.42■■□□□ 1.34
SNX6-209ENST00000557265 OSCARQ8IYS5 282 aa23.41■■□□□ 1.34
SNX6-209ENST00000557265 TOP2AP11388 1531 aaKnown RBP23.32■■□□□ 1.32
SNX6-209ENST00000557265 URB2Q14146 1524 aaKnown RBP23.32■■□□□ 1.32
SNX6-209ENST00000557265 CCDC88BA6NC98 1476 aa23.11■■□□□ 1.29
SNX6-209ENST00000557265 ZNF608Q9ULD9 1512 aaPredicted RBP23.09■■□□□ 1.29
SNX6-209ENST00000557265 IFT140Q96RY7 1462 aa23.09■■□□□ 1.29
SNX6-209ENST00000557265 TOPBP1Q92547 1522 aa23.02■■□□□ 1.28
SNX6-209ENST00000557265 RIMBP3CA6NJZ7 1639 aa22.99■■□□□ 1.27
SNX6-209ENST00000557265 RIMBP3BA6NNM3 1639 aa22.99■■□□□ 1.27
SNX6-209ENST00000557265 RIMBP3Q9UFD9 1639 aa22.99■■□□□ 1.27
SNX6-209ENST00000557265 PRDM2Q13029 1718 aa22.96■■□□□ 1.27
SNX6-209ENST00000557265 ABCC8Q09428 1581 aa22.94■■□□□ 1.26
SNX6-209ENST00000557265 ARHGEF11O15085 1522 aa22.94■■□□□ 1.26
SNX6-209ENST00000557265 CYB5RLQ6IPT4 315 aa22.9■■□□□ 1.26
SNX6-209ENST00000557265 AQRO60306 1485 aaKnown RBP eCLIP22.88■■□□□ 1.251e-6■■■■■ 27.8
SNX6-209ENST00000557265 DNMBPQ6XZF7 1577 aa22.87■■□□□ 1.25
SNX6-209ENST00000557265 EIF4G3O43432 1585 aaKnown RBP22.86■■□□□ 1.25
SNX6-209ENST00000557265 FBLN2P98095 1184 aa22.84■■□□□ 1.25
SNX6-209ENST00000557265 TARBP1Q13395 1621 aaKnown RBP22.79■■□□□ 1.24
SNX6-209ENST00000557265 POLA1P09884 1462 aaPredicted RBP22.78■■□□□ 1.24
SNX6-209ENST00000557265 TRHP20396 242 aaPredicted RBP22.73■■□□□ 1.23
SNX6-209ENST00000557265 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
SNX6-209ENST00000557265 RAD54L2Q9Y4B4 1467 aa22.73■■□□□ 1.23
SNX6-209ENST00000557265 SOGA1O94964 1423 aa22.71■■□□□ 1.23
SNX6-209ENST00000557265 ARAP1Q96P48 1450 aa22.7■■□□□ 1.22
SNX6-209ENST00000557265 CHD1O14646 1710 aa22.7■■□□□ 1.22
SNX6-209ENST00000557265 CHMP7Q8WUX9 453 aaPredicted RBP22.61■■□□□ 1.21
SNX6-209ENST00000557265 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
SNX6-209ENST00000557265 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
SNX6-209ENST00000557265 CUX1P39880 1505 aa22.52■■□□□ 1.2
SNX6-209ENST00000557265 GRIN2BQ13224 1484 aa22.51■■□□□ 1.19
SNX6-209ENST00000557265 MAGI1Q96QZ7 1491 aaPredicted RBP22.51■■□□□ 1.19
SNX6-209ENST00000557265 CLASP1Q7Z460 1538 aa22.5■■□□□ 1.19
SNX6-209ENST00000557265 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
SNX6-209ENST00000557265 SYNJ1O43426 1573 aa22.46■■□□□ 1.19
SNX6-209ENST00000557265 SYNJ2O15056 1496 aa22.46■■□□□ 1.19
SNX6-209ENST00000557265 GAPVD1Q14C86 1478 aa22.4■■□□□ 1.18
SNX6-209ENST00000557265 ABCA10Q8WWZ4 1543 aa22.31■■□□□ 1.16
SNX6-209ENST00000557265 SUPT5HO00267 1087 aaKnown RBP22.27■■□□□ 1.16
SNX6-209ENST00000557265 PBRM1Q86U86 1689 aa22.26■■□□□ 1.15
SNX6-209ENST00000557265 AEBP2Q6ZN18 517 aaPredicted RBP22.25■■□□□ 1.15
SNX6-209ENST00000557265 ABCA5Q8WWZ7 1642 aa22.24■■□□□ 1.15
SNX6-209ENST00000557265 WRNQ14191 1432 aaPredicted RBP eCLIP22.22■■□□□ 1.15
SNX6-209ENST00000557265 GRIN2AQ12879 1464 aa22.21■■□□□ 1.15
SNX6-209ENST00000557265 ERCC6L2Q5T890 1561 aa22.16■■□□□ 1.14
SNX6-209ENST00000557265 NUP160Q12769 1436 aa22.15■■□□□ 1.14
SNX6-209ENST00000557265 FHAD1B1AJZ9 1412 aa22.11■■□□□ 1.13
SNX6-209ENST00000557265 ADAMTS12P58397 1594 aa22.11■■□□□ 1.13
SNX6-209ENST00000557265 CEP170Q5SW79 1584 aa22.11■■□□□ 1.13
SNX6-209ENST00000557265 TOP2BQ02880 1626 aa22.05■■□□□ 1.12
SNX6-209ENST00000557265 BIVM-ERCC5R4GMW8 1640 aa22.01■■□□□ 1.11
SNX6-209ENST00000557265 ERICH3Q5RHP9 1530 aa22.01■■□□□ 1.11
SNX6-209ENST00000557265 SHROOM2Q13796 1616 aa22■■□□□ 1.11
SNX6-209ENST00000557265 JPH4Q96JJ6 628 aa22■■□□□ 1.11
SNX6-209ENST00000557265 PRG4Q92954 1404 aaPredicted RBP21.99■■□□□ 1.11
SNX6-209ENST00000557265 NPM1P06748 294 aaKnown RBP eCLIP21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms