RNA–Protein interactions for RNA: ENST00000557262.5

TUBB3-213, Transcript of tubulin beta 3 class III, humanhuman

TSL 1 (best)

Gene TUBB3, Length 888 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB3-213ENST00000557262 NISCHQ9Y2I1 1504 aa39.54■■■■□ 3.92
TUBB3-213ENST00000557262 CCDC180Q9P1Z9 1646 aa35.36■■■■□ 3.25
TUBB3-213ENST00000557262 ABCC9O60706 1549 aa35.34■■■■□ 3.25
TUBB3-213ENST00000557262 RB1CC1Q8TDY2 1594 aa33.66■■■□□ 2.98
TUBB3-213ENST00000557262 NACADO15069 1562 aa33.47■■■□□ 2.95
TUBB3-213ENST00000557262 DCAF8L2P0C7V8 631 aa33.45■■■□□ 2.95
TUBB3-213ENST00000557262 DNAJC5BQ9UF47 199 aa33.13■■■□□ 2.89
TUBB3-213ENST00000557262 MYO15BQ96JP2 1530 aa33.05■■■□□ 2.88
TUBB3-213ENST00000557262 PABPN1Q86U42 306 aaKnown RBP eCLIP32.98■■■□□ 2.87
TUBB3-213ENST00000557262 UNC13AQ9UPW8 1703 aa32.86■■■□□ 2.85
TUBB3-213ENST00000557262 ZCCHC6Q5VYS8 1495 aaKnown RBP32.75■■■□□ 2.83
TUBB3-213ENST00000557262 BICRAQ9NZM4 1560 aa32.66■■■□□ 2.82
TUBB3-213ENST00000557262 DCAF1Q9Y4B6 1507 aa32.66■■■□□ 2.82
TUBB3-213ENST00000557262 SCRIBQ14160 1630 aa32.24■■■□□ 2.75
TUBB3-213ENST00000557262 SHROOM4Q9ULL8 1493 aa32.23■■■□□ 2.75
TUBB3-213ENST00000557262 CC2D2AQ9P2K1 1620 aa31.92■■■□□ 2.7
TUBB3-213ENST00000557262 EIF4G1Q04637 1599 aaKnown RBP31.86■■■□□ 2.69
TUBB3-213ENST00000557262 CECR2Q9BXF3 1484 aa31.83■■■□□ 2.69
TUBB3-213ENST00000557262 NCAPD3P42695 1498 aa30.94■■■□□ 2.54
TUBB3-213ENST00000557262 ATAD2BQ9ULI0 1458 aa30.83■■■□□ 2.53
TUBB3-213ENST00000557262 SMARCA4P51532 1647 aa30.77■■■□□ 2.52
TUBB3-213ENST00000557262 SMARCA2P51531 1590 aa30.73■■■□□ 2.51
TUBB3-213ENST00000557262 BAZ1AQ9NRL2 1556 aaPredicted RBP30.66■■■□□ 2.5
TUBB3-213ENST00000557262 HMGXB3Q12766 1538 aa30.65■■■□□ 2.5
TUBB3-213ENST00000557262 BAZ1BQ9UIG0 1483 aaKnown RBP30.52■■■□□ 2.48
TUBB3-213ENST00000557262 ERCC6Q03468 1493 aa30.51■■■□□ 2.48
TUBB3-213ENST00000557262 PEG3Q9GZU2 1588 aa30.49■■■□□ 2.47
TUBB3-213ENST00000557262 MROH2BQ7Z745 1585 aa30.45■■■□□ 2.47
TUBB3-213ENST00000557262 CUX2O14529 1486 aa30.43■■■□□ 2.46
TUBB3-213ENST00000557262 NESP48681 1621 aa30.37■■■□□ 2.45
TUBB3-213ENST00000557262 DNAJC5Q9H3Z4 198 aa30.37■■■□□ 2.45
TUBB3-213ENST00000557262 LAMC3Q9Y6N6 1575 aa30.17■■■□□ 2.42
TUBB3-213ENST00000557262 WIZO95785 1651 aa30.07■■■□□ 2.4
TUBB3-213ENST00000557262 PDS5BQ9NTI5 1447 aa30.05■■■□□ 2.4
TUBB3-213ENST00000557262 THOC2Q8NI27 1593 aaKnown RBP30.03■■■□□ 2.4
TUBB3-213ENST00000557262 CADPSQ9ULU8 1353 aa30.02■■■□□ 2.4
TUBB3-213ENST00000557262 KIF21AQ7Z4S6 1674 aa29.96■■■□□ 2.39
TUBB3-213ENST00000557262 RSF1Q96T23 1441 aaPredicted RBP29.89■■■□□ 2.38
TUBB3-213ENST00000557262 MRC2Q9UBG0 1479 aa29.74■■■□□ 2.35
TUBB3-213ENST00000557262 TOP2AP11388 1531 aaKnown RBP29.7■■■□□ 2.34
TUBB3-213ENST00000557262 CFTRP13569 1480 aa29.67■■■□□ 2.34
TUBB3-213ENST00000557262 WDR62O43379 1518 aa29.65■■■□□ 2.34
TUBB3-213ENST00000557262 CEP164Q9UPV0 1460 aa29.64■■■□□ 2.34
TUBB3-213ENST00000557262 FANCD2Q9BXW9 1451 aa29.63■■■□□ 2.33
TUBB3-213ENST00000557262 CCDC88BA6NC98 1476 aa29.42■■■□□ 2.3
TUBB3-213ENST00000557262 URB2Q14146 1524 aaKnown RBP29.36■■■□□ 2.29
TUBB3-213ENST00000557262 PRDM2Q13029 1718 aa29.28■■■□□ 2.28
TUBB3-213ENST00000557262 OSCARQ8IYS5 282 aa29.15■■■□□ 2.26
TUBB3-213ENST00000557262 TRIM41Q8WV44 630 aa29.07■■■□□ 2.24
TUBB3-213ENST00000557262 TOPBP1Q92547 1522 aa29.07■■■□□ 2.24
TUBB3-213ENST00000557262 ABCC8Q09428 1581 aa29.06■■■□□ 2.24
TUBB3-213ENST00000557262 IFT140Q96RY7 1462 aa29.06■■■□□ 2.24
TUBB3-213ENST00000557262 ZNF608Q9ULD9 1512 aaPredicted RBP28.99■■■□□ 2.23
TUBB3-213ENST00000557262 DNMBPQ6XZF7 1577 aa28.95■■■□□ 2.22
TUBB3-213ENST00000557262 EIF4G3O43432 1585 aaKnown RBP28.8■■■□□ 2.2
TUBB3-213ENST00000557262 AQRO60306 1485 aaKnown RBP eCLIP28.78■■■□□ 2.2
TUBB3-213ENST00000557262 POLA1P09884 1462 aaPredicted RBP28.78■■■□□ 2.2
TUBB3-213ENST00000557262 TARBP1Q13395 1621 aaKnown RBP28.77■■■□□ 2.2
TUBB3-213ENST00000557262 SOGA1O94964 1423 aa28.72■■■□□ 2.19
TUBB3-213ENST00000557262 SUPT5HO00267 1087 aaKnown RBP28.72■■■□□ 2.19
TUBB3-213ENST00000557262 RAD54L2Q9Y4B4 1467 aa28.69■■■□□ 2.18
TUBB3-213ENST00000557262 RIMBP3CA6NJZ7 1639 aa28.65■■■□□ 2.18
TUBB3-213ENST00000557262 RIMBP3BA6NNM3 1639 aa28.65■■■□□ 2.18
TUBB3-213ENST00000557262 RIMBP3Q9UFD9 1639 aa28.65■■■□□ 2.18
TUBB3-213ENST00000557262 TDRD9Q8NDG6 1382 aaKnown RBP28.64■■■□□ 2.18
TUBB3-213ENST00000557262 FBLN2P98095 1184 aa28.63■■■□□ 2.17
TUBB3-213ENST00000557262 FGD5Q6ZNL6 1462 aa28.61■■■□□ 2.17
TUBB3-213ENST00000557262 CUX1P39880 1505 aa28.59■■■□□ 2.17
TUBB3-213ENST00000557262 ARHGEF11O15085 1522 aa28.58■■■□□ 2.17
TUBB3-213ENST00000557262 CHD1O14646 1710 aa28.57■■■□□ 2.16
TUBB3-213ENST00000557262 WDR97A6NE52 1622 aa28.49■■■□□ 2.15
TUBB3-213ENST00000557262 CYB5RLQ6IPT4 315 aa28.45■■■□□ 2.14
TUBB3-213ENST00000557262 CHMP7Q8WUX9 453 aaPredicted RBP28.44■■■□□ 2.14
TUBB3-213ENST00000557262 SNAPC4Q5SXM2 1469 aa28.44■■■□□ 2.14
TUBB3-213ENST00000557262 GRIN2BQ13224 1484 aa28.41■■■□□ 2.14
TUBB3-213ENST00000557262 MAGI1Q96QZ7 1491 aaPredicted RBP28.39■■■□□ 2.13
TUBB3-213ENST00000557262 GAPVD1Q14C86 1478 aa28.33■■■□□ 2.13
TUBB3-213ENST00000557262 ABCA10Q8WWZ4 1543 aa28.31■■■□□ 2.12
TUBB3-213ENST00000557262 SYNJ2O15056 1496 aa28.3■■■□□ 2.12
TUBB3-213ENST00000557262 ARAP1Q96P48 1450 aa28.3■■■□□ 2.12
TUBB3-213ENST00000557262 CLASP1Q7Z460 1538 aa28.27■■■□□ 2.12
TUBB3-213ENST00000557262 SYNJ1O43426 1573 aa28.26■■■□□ 2.11
TUBB3-213ENST00000557262 WRNQ14191 1432 aaPredicted RBP eCLIP28.26■■■□□ 2.11
TUBB3-213ENST00000557262 PBRM1Q86U86 1689 aa28.24■■■□□ 2.11
TUBB3-213ENST00000557262 ABCA5Q8WWZ7 1642 aa28.2■■■□□ 2.1
TUBB3-213ENST00000557262 TOP2BQ02880 1626 aa28.16■■■□□ 2.1
TUBB3-213ENST00000557262 BIVM-ERCC5R4GMW8 1640 aa28.13■■■□□ 2.09
TUBB3-213ENST00000557262 TRHP20396 242 aaPredicted RBP28.1■■■□□ 2.09
TUBB3-213ENST00000557262 GRIN2AQ12879 1464 aa28.02■■■□□ 2.08
TUBB3-213ENST00000557262 FHAD1B1AJZ9 1412 aa27.99■■■□□ 2.07
TUBB3-213ENST00000557262 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
TUBB3-213ENST00000557262 ERICH3Q5RHP9 1530 aa27.95■■■□□ 2.06
TUBB3-213ENST00000557262 NUP160Q12769 1436 aa27.94■■■□□ 2.06
TUBB3-213ENST00000557262 CEP170Q5SW79 1584 aa27.9■■■□□ 2.06
TUBB3-213ENST00000557262 ERCC6L2Q5T890 1561 aa27.83■■■□□ 2.05
TUBB3-213ENST00000557262 SHROOM2Q13796 1616 aa27.77■■■□□ 2.04
TUBB3-213ENST00000557262 JPH4Q96JJ6 628 aa27.76■■■□□ 2.03
TUBB3-213ENST00000557262 PRG4Q92954 1404 aaPredicted RBP27.7■■■□□ 2.03
TUBB3-213ENST00000557262 IGF1RP08069 1367 aa27.69■■■□□ 2.02
TUBB3-213ENST00000557262 KIF27Q86VH2 1401 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms