RNA–Protein interactions for RNA: ENST00000556907.1

PCNX4-213, Transcript of pecanex 4, humanhuman

TSL 3

Gene PCNX4, Length 495 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-213ENST00000556907 NISCHQ9Y2I1 1504 aa39.15■■■■□ 3.86
PCNX4-213ENST00000556907 CCDC180Q9P1Z9 1646 aa34.71■■■■□ 3.15
PCNX4-213ENST00000556907 ABCC9O60706 1549 aa33.57■■■□□ 2.96
PCNX4-213ENST00000556907 ZCCHC6Q5VYS8 1495 aaKnown RBP32.67■■■□□ 2.82
PCNX4-213ENST00000556907 NACADO15069 1562 aa32.59■■■□□ 2.81
PCNX4-213ENST00000556907 MYO15BQ96JP2 1530 aa32.55■■■□□ 2.8
PCNX4-213ENST00000556907 DCAF8L2P0C7V8 631 aa32.54■■■□□ 2.8
PCNX4-213ENST00000556907 RB1CC1Q8TDY2 1594 aa32.53■■■□□ 2.8
PCNX4-213ENST00000556907 DCAF1Q9Y4B6 1507 aa32.5■■■□□ 2.79
PCNX4-213ENST00000556907 UNC13AQ9UPW8 1703 aa31.69■■■□□ 2.66
PCNX4-213ENST00000556907 SCRIBQ14160 1630 aa31.57■■■□□ 2.64
PCNX4-213ENST00000556907 BICRAQ9NZM4 1560 aa31.45■■■□□ 2.63
PCNX4-213ENST00000556907 PABPN1Q86U42 306 aaKnown RBP eCLIP31.4■■■□□ 2.62
PCNX4-213ENST00000556907 SHROOM4Q9ULL8 1493 aa31.32■■■□□ 2.6
PCNX4-213ENST00000556907 EIF4G1Q04637 1599 aaKnown RBP30.62■■■□□ 2.49
PCNX4-213ENST00000556907 DNAJC5BQ9UF47 199 aa30.5■■■□□ 2.47
PCNX4-213ENST00000556907 CC2D2AQ9P2K1 1620 aa30.4■■■□□ 2.46
PCNX4-213ENST00000556907 CECR2Q9BXF3 1484 aa30.38■■■□□ 2.45
PCNX4-213ENST00000556907 BAZ1AQ9NRL2 1556 aaPredicted RBP30.36■■■□□ 2.45
PCNX4-213ENST00000556907 SMARCA4P51532 1647 aa30.29■■■□□ 2.44
PCNX4-213ENST00000556907 MROH2BQ7Z745 1585 aa30.11■■■□□ 2.41
PCNX4-213ENST00000556907 SMARCA2P51531 1590 aa30.1■■■□□ 2.41
PCNX4-213ENST00000556907 ATAD2BQ9ULI0 1458 aa30.07■■■□□ 2.4
PCNX4-213ENST00000556907 NCAPD3P42695 1498 aa30.06■■■□□ 2.4
PCNX4-213ENST00000556907 PEG3Q9GZU2 1588 aa30.05■■■□□ 2.4
PCNX4-213ENST00000556907 HMGXB3Q12766 1538 aa29.92■■■□□ 2.38
PCNX4-213ENST00000556907 RSF1Q96T23 1441 aaPredicted RBP29.92■■■□□ 2.38
PCNX4-213ENST00000556907 BAZ1BQ9UIG0 1483 aaKnown RBP29.84■■■□□ 2.37
PCNX4-213ENST00000556907 WIZO95785 1651 aa29.79■■■□□ 2.36
PCNX4-213ENST00000556907 TOP2AP11388 1531 aaKnown RBP29.56■■■□□ 2.32
PCNX4-213ENST00000556907 SUPT5HO00267 1087 aaKnown RBP29.34■■■□□ 2.29
PCNX4-213ENST00000556907 LAMC3Q9Y6N6 1575 aa29.22■■■□□ 2.27
PCNX4-213ENST00000556907 CCDC88BA6NC98 1476 aa29.19■■■□□ 2.26
PCNX4-213ENST00000556907 CADPSQ9ULU8 1353 aa29.19■■■□□ 2.26
PCNX4-213ENST00000556907 NESP48681 1621 aa29.1■■■□□ 2.25
PCNX4-213ENST00000556907 CFTRP13569 1480 aa29.06■■■□□ 2.24
PCNX4-213ENST00000556907 PDS5BQ9NTI5 1447 aa29.03■■■□□ 2.24
PCNX4-213ENST00000556907 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
PCNX4-213ENST00000556907 PRDM2Q13029 1718 aa28.86■■■□□ 2.21
PCNX4-213ENST00000556907 FANCD2Q9BXW9 1451 aa28.81■■■□□ 2.2
PCNX4-213ENST00000556907 KIF21AQ7Z4S6 1674 aa28.8■■■□□ 2.2
PCNX4-213ENST00000556907 CEP164Q9UPV0 1460 aa28.76■■■□□ 2.19
PCNX4-213ENST00000556907 MRC2Q9UBG0 1479 aa28.66■■■□□ 2.18
PCNX4-213ENST00000556907 THOC2Q8NI27 1593 aaKnown RBP28.65■■■□□ 2.18
PCNX4-213ENST00000556907 CUX2O14529 1486 aa28.61■■■□□ 2.17
PCNX4-213ENST00000556907 WDR62O43379 1518 aa28.54■■■□□ 2.16
PCNX4-213ENST00000556907 ABCC8Q09428 1581 aa28.52■■■□□ 2.16
PCNX4-213ENST00000556907 URB2Q14146 1524 aaKnown RBP28.47■■■□□ 2.15
PCNX4-213ENST00000556907 DNMBPQ6XZF7 1577 aa28.39■■■□□ 2.14
PCNX4-213ENST00000556907 TOPBP1Q92547 1522 aa28.38■■■□□ 2.13
PCNX4-213ENST00000556907 CUX1P39880 1505 aa28.24■■■□□ 2.11
PCNX4-213ENST00000556907 WRNQ14191 1432 aaPredicted RBP eCLIP28.23■■■□□ 2.11
PCNX4-213ENST00000556907 IFT140Q96RY7 1462 aa28.18■■■□□ 2.1
PCNX4-213ENST00000556907 POLA1P09884 1462 aaPredicted RBP28.15■■■□□ 2.1
PCNX4-213ENST00000556907 TOP2BQ02880 1626 aa28.13■■■□□ 2.09
PCNX4-213ENST00000556907 FGD5Q6ZNL6 1462 aa28.12■■■□□ 2.09
PCNX4-213ENST00000556907 BIVM-ERCC5R4GMW8 1640 aa28.11■■■□□ 2.09
PCNX4-213ENST00000556907 SOGA1O94964 1423 aa28.08■■■□□ 2.09
PCNX4-213ENST00000556907 SYNJ1O43426 1573 aa28.07■■■□□ 2.08
PCNX4-213ENST00000556907 TARBP1Q13395 1621 aaKnown RBP28.03■■■□□ 2.08
PCNX4-213ENST00000556907 RAD54L2Q9Y4B4 1467 aa27.98■■■□□ 2.07
PCNX4-213ENST00000556907 WDR97A6NE52 1622 aa27.96■■■□□ 2.07
PCNX4-213ENST00000556907 ABCA10Q8WWZ4 1543 aa27.92■■■□□ 2.06
PCNX4-213ENST00000556907 ZNF608Q9ULD9 1512 aaPredicted RBP27.92■■■□□ 2.06
PCNX4-213ENST00000556907 EIF4G3O43432 1585 aaKnown RBP27.85■■■□□ 2.05
PCNX4-213ENST00000556907 TDRD9Q8NDG6 1382 aaKnown RBP27.83■■■□□ 2.05
PCNX4-213ENST00000556907 AQRO60306 1485 aaKnown RBP eCLIP27.82■■■□□ 2.04
PCNX4-213ENST00000556907 TRIM41Q8WV44 630 aa27.78■■■□□ 2.04
PCNX4-213ENST00000556907 GAPVD1Q14C86 1478 aa27.75■■■□□ 2.03
PCNX4-213ENST00000556907 ABCA5Q8WWZ7 1642 aa27.73■■■□□ 2.03
PCNX4-213ENST00000556907 GRIN2BQ13224 1484 aa27.72■■■□□ 2.03
PCNX4-213ENST00000556907 KIF27Q86VH2 1401 aa27.66■■■□□ 2.02
PCNX4-213ENST00000556907 CHIC1Q5VXU3 224 aa27.64■■■□□ 2.02
PCNX4-213ENST00000556907 MAGI1Q96QZ7 1491 aaPredicted RBP27.64■■■□□ 2.01
PCNX4-213ENST00000556907 PBRM1Q86U86 1689 aa27.63■■■□□ 2.01
PCNX4-213ENST00000556907 ERICH3Q5RHP9 1530 aa27.61■■■□□ 2.01
PCNX4-213ENST00000556907 SNAPC4Q5SXM2 1469 aa27.58■■■□□ 2.01
PCNX4-213ENST00000556907 SYNJ2O15056 1496 aa27.51■■□□□ 1.99
PCNX4-213ENST00000556907 OSCARQ8IYS5 282 aa27.49■■□□□ 1.99
PCNX4-213ENST00000556907 CHMP7Q8WUX9 453 aaPredicted RBP27.48■■□□□ 1.99
PCNX4-213ENST00000556907 FHAD1B1AJZ9 1412 aa27.47■■□□□ 1.99
PCNX4-213ENST00000556907 IGF1RP08069 1367 aa27.47■■□□□ 1.99
PCNX4-213ENST00000556907 FBLN2P98095 1184 aa27.45■■□□□ 1.98
PCNX4-213ENST00000556907 ADAMTS12P58397 1594 aa27.43■■□□□ 1.98
PCNX4-213ENST00000556907 CHD1O14646 1710 aa27.42■■□□□ 1.98
PCNX4-213ENST00000556907 CUL7Q14999 1698 aa27.4■■□□□ 1.98
PCNX4-213ENST00000556907 EEA1Q15075 1411 aa27.38■■□□□ 1.97
PCNX4-213ENST00000556907 DNAJC5Q9H3Z4 198 aa27.37■■□□□ 1.97
PCNX4-213ENST00000556907 RUSC2Q8N2Y8 1516 aa27.35■■□□□ 1.97
PCNX4-213ENST00000556907 GRIN2AQ12879 1464 aa27.34■■□□□ 1.97
PCNX4-213ENST00000556907 CARMIL1Q5VZK9 1371 aa27.33■■□□□ 1.97
PCNX4-213ENST00000556907 CSRNP3Q8WYN3 585 aa27.24■■□□□ 1.95
PCNX4-213ENST00000556907 NUP160Q12769 1436 aa27.23■■□□□ 1.95
PCNX4-213ENST00000556907 RAPGEF2Q9Y4G8 1499 aa27.2■■□□□ 1.95
PCNX4-213ENST00000556907 CLASP1Q7Z460 1538 aa27.17■■□□□ 1.94
PCNX4-213ENST00000556907 PRXQ9BXM0 1461 aa27.17■■□□□ 1.94
PCNX4-213ENST00000556907 CEP170Q5SW79 1584 aa27.14■■□□□ 1.94
PCNX4-213ENST00000556907 FAM9AQ8IZU1 332 aaPredicted RBP27.08■■□□□ 1.93
PCNX4-213ENST00000556907 KIAA0586Q9BVV6 1533 aa27.06■■□□□ 1.92
PCNX4-213ENST00000556907 KIF21BO75037 1637 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms