RNA–Protein interactions for RNA: ENST00000556833.1

CHD8-211, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 5

Gene CHD8, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-211ENST00000556833 NISCHQ9Y2I1 1504 aa37.17■■■■□ 3.54
CHD8-211ENST00000556833 ABCC9O60706 1549 aa33.61■■■□□ 2.97
CHD8-211ENST00000556833 CCDC180Q9P1Z9 1646 aa33.39■■■□□ 2.94
CHD8-211ENST00000556833 RB1CC1Q8TDY2 1594 aa31.84■■■□□ 2.69
CHD8-211ENST00000556833 DCAF8L2P0C7V8 631 aa31.58■■■□□ 2.65
CHD8-211ENST00000556833 DNAJC5BQ9UF47 199 aa31.55■■■□□ 2.64
CHD8-211ENST00000556833 NACADO15069 1562 aa31.54■■■□□ 2.64
CHD8-211ENST00000556833 PABPN1Q86U42 306 aaKnown RBP eCLIP31.28■■■□□ 2.6
CHD8-211ENST00000556833 UNC13AQ9UPW8 1703 aa31.27■■■□□ 2.6
CHD8-211ENST00000556833 BICRAQ9NZM4 1560 aa30.96■■■□□ 2.55
CHD8-211ENST00000556833 MYO15BQ96JP2 1530 aa30.95■■■□□ 2.55
CHD8-211ENST00000556833 ZCCHC6Q5VYS8 1495 aaKnown RBP30.8■■■□□ 2.52
CHD8-211ENST00000556833 SCRIBQ14160 1630 aa30.6■■■□□ 2.49
CHD8-211ENST00000556833 DCAF1Q9Y4B6 1507 aa30.57■■■□□ 2.49
CHD8-211ENST00000556833 SHROOM4Q9ULL8 1493 aa30.32■■■□□ 2.44
CHD8-211ENST00000556833 CC2D2AQ9P2K1 1620 aa30.32■■■□□ 2.44
CHD8-211ENST00000556833 CECR2Q9BXF3 1484 aa30.21■■■□□ 2.43
CHD8-211ENST00000556833 EIF4G1Q04637 1599 aaKnown RBP30.2■■■□□ 2.42
CHD8-211ENST00000556833 NCAPD3P42695 1498 aa29.09■■■□□ 2.25
CHD8-211ENST00000556833 SMARCA4P51532 1647 aa29.08■■■□□ 2.25
CHD8-211ENST00000556833 ATAD2BQ9ULI0 1458 aa29.06■■■□□ 2.24
CHD8-211ENST00000556833 ERCC6Q03468 1493 aa28.99■■■□□ 2.23
CHD8-211ENST00000556833 SMARCA2P51531 1590 aa28.96■■■□□ 2.23
CHD8-211ENST00000556833 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
CHD8-211ENST00000556833 DNAJC5Q9H3Z4 198 aa28.91■■■□□ 2.22
CHD8-211ENST00000556833 NESP48681 1621 aa28.86■■■□□ 2.21
CHD8-211ENST00000556833 BAZ1AQ9NRL2 1556 aaPredicted RBP28.85■■■□□ 2.21
CHD8-211ENST00000556833 CUX2O14529 1486 aa28.84■■■□□ 2.21
CHD8-211ENST00000556833 BAZ1BQ9UIG0 1483 aaKnown RBP28.82■■■□□ 2.2
CHD8-211ENST00000556833 MROH2BQ7Z745 1585 aa28.71■■■□□ 2.19
CHD8-211ENST00000556833 PEG3Q9GZU2 1588 aa28.67■■■□□ 2.18
CHD8-211ENST00000556833 THOC2Q8NI27 1593 aaKnown RBP28.54■■■□□ 2.16
CHD8-211ENST00000556833 KIF21AQ7Z4S6 1674 aa28.52■■■□□ 2.16
CHD8-211ENST00000556833 LAMC3Q9Y6N6 1575 aa28.5■■■□□ 2.15
CHD8-211ENST00000556833 WIZO95785 1651 aa28.44■■■□□ 2.14
CHD8-211ENST00000556833 PDS5BQ9NTI5 1447 aa28.32■■■□□ 2.12
CHD8-211ENST00000556833 CADPSQ9ULU8 1353 aa28.24■■■□□ 2.11
CHD8-211ENST00000556833 MRC2Q9UBG0 1479 aa28.15■■■□□ 2.1
CHD8-211ENST00000556833 WDR62O43379 1518 aa28.07■■■□□ 2.08
CHD8-211ENST00000556833 CEP164Q9UPV0 1460 aa28.03■■■□□ 2.08
CHD8-211ENST00000556833 RSF1Q96T23 1441 aaPredicted RBP28.02■■■□□ 2.08
CHD8-211ENST00000556833 FANCD2Q9BXW9 1451 aa27.99■■■□□ 2.07
CHD8-211ENST00000556833 TOP2AP11388 1531 aaKnown RBP27.97■■■□□ 2.07
CHD8-211ENST00000556833 CFTRP13569 1480 aa27.89■■■□□ 2.06
CHD8-211ENST00000556833 TRIM41Q8WV44 630 aa27.82■■■□□ 2.04
CHD8-211ENST00000556833 URB2Q14146 1524 aaKnown RBP27.79■■■□□ 2.04
CHD8-211ENST00000556833 PRDM2Q13029 1718 aa27.75■■■□□ 2.03
CHD8-211ENST00000556833 CCDC88BA6NC98 1476 aa27.66■■■□□ 2.02
CHD8-211ENST00000556833 OSCARQ8IYS5 282 aa27.52■■■□□ 2
CHD8-211ENST00000556833 ZNF608Q9ULD9 1512 aaPredicted RBP27.5■■□□□ 1.99
CHD8-211ENST00000556833 TOPBP1Q92547 1522 aa27.46■■□□□ 1.99
CHD8-211ENST00000556833 IFT140Q96RY7 1462 aa27.42■■□□□ 1.98
CHD8-211ENST00000556833 EIF4G3O43432 1585 aaKnown RBP27.35■■□□□ 1.97
CHD8-211ENST00000556833 DNMBPQ6XZF7 1577 aa27.35■■□□□ 1.97
CHD8-211ENST00000556833 RIMBP3CA6NJZ7 1639 aa27.31■■□□□ 1.96
CHD8-211ENST00000556833 RIMBP3BA6NNM3 1639 aa27.31■■□□□ 1.96
CHD8-211ENST00000556833 RIMBP3Q9UFD9 1639 aa27.31■■□□□ 1.96
CHD8-211ENST00000556833 ABCC8Q09428 1581 aa27.26■■□□□ 1.95
CHD8-211ENST00000556833 TARBP1Q13395 1621 aaKnown RBP27.23■■□□□ 1.95
CHD8-211ENST00000556833 CHD1O14646 1710 aa27.22■■□□□ 1.95
CHD8-211ENST00000556833 AQRO60306 1485 aaKnown RBP eCLIP27.21■■□□□ 1.95
CHD8-211ENST00000556833 POLA1P09884 1462 aaPredicted RBP27.17■■□□□ 1.94
CHD8-211ENST00000556833 ARHGEF11O15085 1522 aa27.16■■□□□ 1.94
CHD8-211ENST00000556833 RAD54L2Q9Y4B4 1467 aa27.13■■□□□ 1.93
CHD8-211ENST00000556833 FBLN2P98095 1184 aa27.1■■□□□ 1.93
CHD8-211ENST00000556833 TDRD9Q8NDG6 1382 aaKnown RBP27.03■■□□□ 1.92
CHD8-211ENST00000556833 FGD5Q6ZNL6 1462 aa27.02■■□□□ 1.92
CHD8-211ENST00000556833 SOGA1O94964 1423 aa27.02■■□□□ 1.92
CHD8-211ENST00000556833 CUX1P39880 1505 aa26.99■■□□□ 1.91
CHD8-211ENST00000556833 CYB5RLQ6IPT4 315 aa26.98■■□□□ 1.91
CHD8-211ENST00000556833 SNAPC4Q5SXM2 1469 aa26.95■■□□□ 1.91
CHD8-211ENST00000556833 ARAP1Q96P48 1450 aa26.91■■□□□ 1.9
CHD8-211ENST00000556833 SUPT5HO00267 1087 aaKnown RBP26.88■■□□□ 1.89
CHD8-211ENST00000556833 WDR97A6NE52 1622 aa26.85■■□□□ 1.89
CHD8-211ENST00000556833 PBRM1Q86U86 1689 aa26.82■■□□□ 1.88
CHD8-211ENST00000556833 CHMP7Q8WUX9 453 aaPredicted RBP26.79■■□□□ 1.88
CHD8-211ENST00000556833 GRIN2BQ13224 1484 aa26.78■■□□□ 1.88
CHD8-211ENST00000556833 CLASP1Q7Z460 1538 aa26.78■■□□□ 1.88
CHD8-211ENST00000556833 MAGI1Q96QZ7 1491 aaPredicted RBP26.77■■□□□ 1.88
CHD8-211ENST00000556833 SYNJ1O43426 1573 aa26.76■■□□□ 1.87
CHD8-211ENST00000556833 TRHP20396 242 aaPredicted RBP26.75■■□□□ 1.87
CHD8-211ENST00000556833 SYNJ2O15056 1496 aa26.7■■□□□ 1.87
CHD8-211ENST00000556833 GAPVD1Q14C86 1478 aa26.7■■□□□ 1.87
CHD8-211ENST00000556833 ABCA5Q8WWZ7 1642 aa26.66■■□□□ 1.86
CHD8-211ENST00000556833 ABCA10Q8WWZ4 1543 aa26.63■■□□□ 1.85
CHD8-211ENST00000556833 BIVM-ERCC5R4GMW8 1640 aa26.52■■□□□ 1.84
CHD8-211ENST00000556833 WRNQ14191 1432 aaPredicted RBP eCLIP26.5■■□□□ 1.83
CHD8-211ENST00000556833 TOP2BQ02880 1626 aa26.49■■□□□ 1.83
CHD8-211ENST00000556833 ADAMTS12P58397 1594 aa26.49■■□□□ 1.83
CHD8-211ENST00000556833 ERCC6L2Q5T890 1561 aa26.47■■□□□ 1.83
CHD8-211ENST00000556833 GRIN2AQ12879 1464 aa26.47■■□□□ 1.83
CHD8-211ENST00000556833 CEP170Q5SW79 1584 aa26.44■■□□□ 1.82
CHD8-211ENST00000556833 NUP160Q12769 1436 aa26.32■■□□□ 1.8
CHD8-211ENST00000556833 FHAD1B1AJZ9 1412 aa26.31■■□□□ 1.8
CHD8-211ENST00000556833 ERICH3Q5RHP9 1530 aa26.29■■□□□ 1.8
CHD8-211ENST00000556833 SHROOM2Q13796 1616 aa26.26■■□□□ 1.79
CHD8-211ENST00000556833 PRG4Q92954 1404 aaPredicted RBP26.14■■□□□ 1.78
CHD8-211ENST00000556833 RUSC2Q8N2Y8 1516 aa26.12■■□□□ 1.77
CHD8-211ENST00000556833 JPH4Q96JJ6 628 aa26.07■■□□□ 1.76
CHD8-211ENST00000556833 KIF13AQ9H1H9 1805 aa26.05■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms