RNA–Protein interactions for RNA: ENST00000556830.1

LRP1-212, Transcript of LDL receptor related protein 1, humanhuman

TSL 2

Gene LRP1, Length 1,847 nt, Biotype retained intron, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP1-212ENST00000556830 NISCHQ9Y2I1 1504 aa25.78■■□□□ 1.72
LRP1-212ENST00000556830 CCDC180Q9P1Z9 1646 aa22.4■■□□□ 1.18
LRP1-212ENST00000556830 ZCCHC6Q5VYS8 1495 aaKnown RBP21.73■■□□□ 1.07
LRP1-212ENST00000556830 HRCP23327 699 aa21.52■■□□□ 1.04
LRP1-212ENST00000556830 SHROOM4Q9ULL8 1493 aa21.35■■□□□ 1.01
LRP1-212ENST00000556830 DCAF1Q9Y4B6 1507 aa21.23■□□□□ 0.99
LRP1-212ENST00000556830 DCAF8L2P0C7V8 631 aa21.22■□□□□ 0.99
LRP1-212ENST00000556830 PELP1Q8IZL8 1130 aaKnown RBP21.13■□□□□ 0.97
LRP1-212ENST00000556830 ABCC9O60706 1549 aa21.11■□□□□ 0.97
LRP1-212ENST00000556830 AEBP2Q6ZN18 517 aaPredicted RBP21.06■□□□□ 0.96
LRP1-212ENST00000556830 SUPT5HO00267 1087 aaKnown RBP20.88■□□□□ 0.93
LRP1-212ENST00000556830 MYO15BQ96JP2 1530 aa20.85■□□□□ 0.93
LRP1-212ENST00000556830 CHIC1Q5VXU3 224 aa20.82■□□□□ 0.92
LRP1-212ENST00000556830 PCGF6Q9BYE7 350 aa20.81■□□□□ 0.92
LRP1-212ENST00000556830 SCRIBQ14160 1630 aa20.75■□□□□ 0.91
LRP1-212ENST00000556830 NACADO15069 1562 aa20.72■□□□□ 0.91
LRP1-212ENST00000556830 PPARGC1BQ86YN6 1023 aaKnown RBP20.64■□□□□ 0.9
LRP1-212ENST00000556830 ZEB1P37275 1124 aaPredicted RBP20.53■□□□□ 0.88
LRP1-212ENST00000556830 RB1CC1Q8TDY2 1594 aa20.52■□□□□ 0.88
LRP1-212ENST00000556830 MYT1Q01538 1121 aa20.46■□□□□ 0.87
LRP1-212ENST00000556830 TRIM26Q12899 539 aaPredicted RBP20.46■□□□□ 0.87
LRP1-212ENST00000556830 UNC13AQ9UPW8 1703 aa20.36■□□□□ 0.85
LRP1-212ENST00000556830 SCAF1Q9H7N4 1312 aaKnown RBP20.17■□□□□ 0.82
LRP1-212ENST00000556830 RSF1Q96T23 1441 aaPredicted RBP20.09■□□□□ 0.81
LRP1-212ENST00000556830 CECR2Q9BXF3 1484 aa20.09■□□□□ 0.81
LRP1-212ENST00000556830 LOC105371045A0A1W2PR82 267 aa20.06■□□□□ 0.8
LRP1-212ENST00000556830 MROH2BQ7Z745 1585 aa20■□□□□ 0.79
LRP1-212ENST00000556830 BICRAQ9NZM4 1560 aa19.99■□□□□ 0.79
LRP1-212ENST00000556830 WIZO95785 1651 aa19.92■□□□□ 0.78
LRP1-212ENST00000556830 BAZ1AQ9NRL2 1556 aaPredicted RBP19.87■□□□□ 0.77
LRP1-212ENST00000556830 ACIN1Q9UKV3 1341 aaKnown RBP19.86■□□□□ 0.77
LRP1-212ENST00000556830 SMARCA4P51532 1647 aa19.84■□□□□ 0.77
LRP1-212ENST00000556830 PABPN1Q86U42 306 aaKnown RBP eCLIP19.83■□□□□ 0.76
LRP1-212ENST00000556830 CENPBP07199 599 aaPredicted RBP19.73■□□□□ 0.75
LRP1-212ENST00000556830 NEUROD1Q13562 356 aa19.62■□□□□ 0.73
LRP1-212ENST00000556830 TOP2AP11388 1531 aaKnown RBP19.61■□□□□ 0.73
LRP1-212ENST00000556830 TRIM41Q8WV44 630 aa19.55■□□□□ 0.72
LRP1-212ENST00000556830 GTF3C3Q9Y5Q9 886 aa19.53■□□□□ 0.72
LRP1-212ENST00000556830 PEG3Q9GZU2 1588 aa19.5■□□□□ 0.71
LRP1-212ENST00000556830 EIF4G1Q04637 1599 aaKnown RBP19.49■□□□□ 0.71
LRP1-212ENST00000556830 SMARCA2P51531 1590 aa19.48■□□□□ 0.71
LRP1-212ENST00000556830 DIEXFQ68CQ4 756 aaKnown RBP19.46■□□□□ 0.71
LRP1-212ENST00000556830 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
LRP1-212ENST00000556830 CCDC88BA6NC98 1476 aa19.4■□□□□ 0.7
LRP1-212ENST00000556830 CCER1Q8TC90 406 aaPredicted RBP19.38■□□□□ 0.69
LRP1-212ENST00000556830 ATAD2BQ9ULI0 1458 aa19.37■□□□□ 0.69
LRP1-212ENST00000556830 BAZ1BQ9UIG0 1483 aaKnown RBP19.29■□□□□ 0.68
LRP1-212ENST00000556830 TTBK1Q5TCY1 1321 aaPredicted RBP19.27■□□□□ 0.67
LRP1-212ENST00000556830 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.26■□□□□ 0.67
LRP1-212ENST00000556830 WRNQ14191 1432 aaPredicted RBP eCLIP19.23■□□□□ 0.67
LRP1-212ENST00000556830 ABCC8Q09428 1581 aa19.21■□□□□ 0.67
LRP1-212ENST00000556830 FAM9AQ8IZU1 332 aaPredicted RBP19.21■□□□□ 0.67
LRP1-212ENST00000556830 CLSPNQ9HAW4 1339 aa19.18■□□□□ 0.66
LRP1-212ENST00000556830 ZNF316A6NFI3 1004 aaPredicted RBP19.18■□□□□ 0.66
LRP1-212ENST00000556830 HMGXB3Q12766 1538 aa19.16■□□□□ 0.66
LRP1-212ENST00000556830 NCAPD3P42695 1498 aa19.09■□□□□ 0.65
LRP1-212ENST00000556830 CC2D2AQ9P2K1 1620 aa19.05■□□□□ 0.64
LRP1-212ENST00000556830 SYNJ1O43426 1573 aa18.94■□□□□ 0.62
LRP1-212ENST00000556830 TNIKQ9UKE5 1360 aa18.9■□□□□ 0.62
LRP1-212ENST00000556830 CEP162Q5TB80 1403 aa18.89■□□□□ 0.61
LRP1-212ENST00000556830 PRDM2Q13029 1718 aa18.89■□□□□ 0.61
LRP1-212ENST00000556830 EEA1Q15075 1411 aa18.87■□□□□ 0.61
LRP1-212ENST00000556830 MIER1Q8N108 512 aa18.86■□□□□ 0.61
LRP1-212ENST00000556830 EHMT2Q96KQ7 1210 aa18.85■□□□□ 0.61
LRP1-212ENST00000556830 YTHDC1Q96MU7 727 aaKnown RBP18.84■□□□□ 0.61
LRP1-212ENST00000556830 SOGA1O94964 1423 aa18.8■□□□□ 0.6
LRP1-212ENST00000556830 BIVM-ERCC5R4GMW8 1640 aa18.78■□□□□ 0.6
LRP1-212ENST00000556830 CFTRP13569 1480 aa18.78■□□□□ 0.6
LRP1-212ENST00000556830 RUSC2Q8N2Y8 1516 aa18.77■□□□□ 0.6
LRP1-212ENST00000556830 TOP2BQ02880 1626 aa18.77■□□□□ 0.6
LRP1-212ENST00000556830 ANP32EQ9BTT0 268 aa18.75■□□□□ 0.59
LRP1-212ENST00000556830 SUPT16HQ9Y5B9 1047 aaKnown RBP18.69■□□□□ 0.58
LRP1-212ENST00000556830 CUX1P39880 1505 aa18.69■□□□□ 0.58
LRP1-212ENST00000556830 GOLGA3Q08378 1498 aa18.64■□□□□ 0.57
LRP1-212ENST00000556830 CADPSQ9ULU8 1353 aa18.62■□□□□ 0.57
LRP1-212ENST00000556830 TSHZ2Q9NRE2 1034 aa18.6■□□□□ 0.57
LRP1-212ENST00000556830 BCL11AQ9H165 835 aa18.58■□□□□ 0.57
LRP1-212ENST00000556830 CSRNP3Q8WYN3 585 aa18.58■□□□□ 0.56
LRP1-212ENST00000556830 KIF21BO75037 1637 aa18.56■□□□□ 0.56
LRP1-212ENST00000556830 NESP48681 1621 aa18.56■□□□□ 0.56
LRP1-212ENST00000556830 FANCD2Q9BXW9 1451 aa18.5■□□□□ 0.55
LRP1-212ENST00000556830 CEP164Q9UPV0 1460 aa18.48■□□□□ 0.55
LRP1-212ENST00000556830 UBTFP17480 764 aaKnown RBP18.47■□□□□ 0.55
LRP1-212ENST00000556830 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
LRP1-212ENST00000556830 VPS8Q8N3P4 1428 aa18.47■□□□□ 0.55
LRP1-212ENST00000556830 HNRNPUL2Q1KMD3 747 aaKnown RBP18.43■□□□□ 0.54
LRP1-212ENST00000556830 FGD5Q6ZNL6 1462 aa18.42■□□□□ 0.54
LRP1-212ENST00000556830 RAPGEF2Q9Y4G8 1499 aa18.42■□□□□ 0.54
LRP1-212ENST00000556830 KIF21AQ7Z4S6 1674 aa18.41■□□□□ 0.54
LRP1-212ENST00000556830 DNMBPQ6XZF7 1577 aa18.4■□□□□ 0.54
LRP1-212ENST00000556830 CLIP1P30622 1438 aa18.39■□□□□ 0.53
LRP1-212ENST00000556830 DHX57Q6P158 1386 aaKnown RBP18.36■□□□□ 0.53
LRP1-212ENST00000556830 KIF27Q86VH2 1401 aa18.36■□□□□ 0.53
LRP1-212ENST00000556830 APLP2Q06481 763 aa18.35■□□□□ 0.53
LRP1-212ENST00000556830 TOPBP1Q92547 1522 aa18.35■□□□□ 0.53
LRP1-212ENST00000556830 ERICH3Q5RHP9 1530 aa18.33■□□□□ 0.53
LRP1-212ENST00000556830 PHF23Q9BUL5 403 aaPredicted RBP18.33■□□□□ 0.53
LRP1-212ENST00000556830 CUX2O14529 1486 aa18.33■□□□□ 0.52
LRP1-212ENST00000556830 PRXQ9BXM0 1461 aa18.33■□□□□ 0.52
LRP1-212ENST00000556830 URB2Q14146 1524 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms