RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 NISCHQ9Y2I1 1504 aa31.91■■■□□ 2.7
SHMT2-223ENST00000556689 ABCC9O60706 1549 aa29.01■■■□□ 2.23
SHMT2-223ENST00000556689 CCDC180Q9P1Z9 1646 aa28.62■■■□□ 2.17
SHMT2-223ENST00000556689 DNAJC5BQ9UF47 199 aa27.54■■■□□ 2
SHMT2-223ENST00000556689 RB1CC1Q8TDY2 1594 aa27.46■■□□□ 1.99
SHMT2-223ENST00000556689 DCAF8L2P0C7V8 631 aa27.23■■□□□ 1.95
SHMT2-223ENST00000556689 NACADO15069 1562 aa27.22■■□□□ 1.95
SHMT2-223ENST00000556689 PABPN1Q86U42 306 aaKnown RBP eCLIP27.07■■□□□ 1.92
SHMT2-223ENST00000556689 MYO15BQ96JP2 1530 aa26.76■■□□□ 1.87
SHMT2-223ENST00000556689 UNC13AQ9UPW8 1703 aa26.7■■□□□ 1.86
SHMT2-223ENST00000556689 BICRAQ9NZM4 1560 aa26.64■■□□□ 1.86
SHMT2-223ENST00000556689 ZCCHC6Q5VYS8 1495 aaKnown RBP26.35■■□□□ 1.81
SHMT2-223ENST00000556689 DCAF1Q9Y4B6 1507 aa26.32■■□□□ 1.8
SHMT2-223ENST00000556689 SHROOM4Q9ULL8 1493 aa26.28■■□□□ 1.8
SHMT2-223ENST00000556689 CECR2Q9BXF3 1484 aa26.17■■□□□ 1.78
SHMT2-223ENST00000556689 CC2D2AQ9P2K1 1620 aa26.14■■□□□ 1.78
SHMT2-223ENST00000556689 SCRIBQ14160 1630 aa26.12■■□□□ 1.77
SHMT2-223ENST00000556689 EIF4G1Q04637 1599 aaKnown RBP26.03■■□□□ 1.76
SHMT2-223ENST00000556689 DNAJC5Q9H3Z4 198 aa25.5■■□□□ 1.67
SHMT2-223ENST00000556689 NCAPD3P42695 1498 aa25.19■■□□□ 1.62
SHMT2-223ENST00000556689 CUX2O14529 1486 aa25.1■■□□□ 1.61
SHMT2-223ENST00000556689 ERCC6Q03468 1493 aa25.09■■□□□ 1.61
SHMT2-223ENST00000556689 ATAD2BQ9ULI0 1458 aa25.06■■□□□ 1.6
SHMT2-223ENST00000556689 SMARCA2P51531 1590 aa24.94■■□□□ 1.58
SHMT2-223ENST00000556689 HMGXB3Q12766 1538 aa24.89■■□□□ 1.57
SHMT2-223ENST00000556689 SMARCA4P51532 1647 aa24.88■■□□□ 1.57
SHMT2-223ENST00000556689 NESP48681 1621 aa24.83■■□□□ 1.57
SHMT2-223ENST00000556689 BAZ1BQ9UIG0 1483 aaKnown RBP24.78■■□□□ 1.56
SHMT2-223ENST00000556689 BAZ1AQ9NRL2 1556 aaPredicted RBP24.76■■□□□ 1.55
SHMT2-223ENST00000556689 PEG3Q9GZU2 1588 aa24.65■■□□□ 1.54
SHMT2-223ENST00000556689 LAMC3Q9Y6N6 1575 aa24.59■■□□□ 1.53
SHMT2-223ENST00000556689 MROH2BQ7Z745 1585 aa24.58■■□□□ 1.52
SHMT2-223ENST00000556689 PDS5BQ9NTI5 1447 aa24.56■■□□□ 1.52
SHMT2-223ENST00000556689 THOC2Q8NI27 1593 aaKnown RBP24.54■■□□□ 1.52
SHMT2-223ENST00000556689 CADPSQ9ULU8 1353 aa24.44■■□□□ 1.5
SHMT2-223ENST00000556689 KIF21AQ7Z4S6 1674 aa24.4■■□□□ 1.5
SHMT2-223ENST00000556689 MRC2Q9UBG0 1479 aa24.29■■□□□ 1.48
SHMT2-223ENST00000556689 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
SHMT2-223ENST00000556689 WIZO95785 1651 aa24.22■■□□□ 1.47
SHMT2-223ENST00000556689 WDR62O43379 1518 aa24.2■■□□□ 1.47
SHMT2-223ENST00000556689 CEP164Q9UPV0 1460 aa24.15■■□□□ 1.46
SHMT2-223ENST00000556689 FANCD2Q9BXW9 1451 aa24.12■■□□□ 1.45
SHMT2-223ENST00000556689 CFTRP13569 1480 aa24.07■■□□□ 1.44
SHMT2-223ENST00000556689 OSCARQ8IYS5 282 aa24.05■■□□□ 1.44
SHMT2-223ENST00000556689 RSF1Q96T23 1441 aaPredicted RBP24.02■■□□□ 1.44
SHMT2-223ENST00000556689 TOP2AP11388 1531 aaKnown RBP23.91■■□□□ 1.42
SHMT2-223ENST00000556689 URB2Q14146 1524 aaKnown RBP23.9■■□□□ 1.42
SHMT2-223ENST00000556689 CCDC88BA6NC98 1476 aa23.72■■□□□ 1.39
SHMT2-223ENST00000556689 IFT140Q96RY7 1462 aa23.7■■□□□ 1.38
SHMT2-223ENST00000556689 ZNF608Q9ULD9 1512 aaPredicted RBP23.67■■□□□ 1.38
SHMT2-223ENST00000556689 TOPBP1Q92547 1522 aa23.61■■□□□ 1.37
SHMT2-223ENST00000556689 PRDM2Q13029 1718 aa23.6■■□□□ 1.37
SHMT2-223ENST00000556689 ABCC8Q09428 1581 aa23.59■■□□□ 1.37
SHMT2-223ENST00000556689 RIMBP3CA6NJZ7 1639 aa23.58■■□□□ 1.36
SHMT2-223ENST00000556689 RIMBP3BA6NNM3 1639 aa23.58■■□□□ 1.36
SHMT2-223ENST00000556689 RIMBP3Q9UFD9 1639 aa23.58■■□□□ 1.36
SHMT2-223ENST00000556689 ARHGEF11O15085 1522 aa23.51■■□□□ 1.35
SHMT2-223ENST00000556689 CYB5RLQ6IPT4 315 aa23.51■■□□□ 1.35
SHMT2-223ENST00000556689 AQRO60306 1485 aaKnown RBP eCLIP23.47■■□□□ 1.355e-7■■■■□ 23.4
SHMT2-223ENST00000556689 DNMBPQ6XZF7 1577 aa23.46■■□□□ 1.35
SHMT2-223ENST00000556689 FBLN2P98095 1184 aa23.45■■□□□ 1.34
SHMT2-223ENST00000556689 EIF4G3O43432 1585 aaKnown RBP23.44■■□□□ 1.34
SHMT2-223ENST00000556689 TARBP1Q13395 1621 aaKnown RBP23.37■■□□□ 1.33
SHMT2-223ENST00000556689 POLA1P09884 1462 aaPredicted RBP23.35■■□□□ 1.33
SHMT2-223ENST00000556689 TRHP20396 242 aaPredicted RBP23.34■■□□□ 1.33
SHMT2-223ENST00000556689 SOGA1O94964 1423 aa23.32■■□□□ 1.32
SHMT2-223ENST00000556689 TDRD9Q8NDG6 1382 aaKnown RBP23.31■■□□□ 1.32
SHMT2-223ENST00000556689 RAD54L2Q9Y4B4 1467 aa23.3■■□□□ 1.32
SHMT2-223ENST00000556689 CHD1O14646 1710 aa23.28■■□□□ 1.32
SHMT2-223ENST00000556689 ARAP1Q96P48 1450 aa23.27■■□□□ 1.32
SHMT2-223ENST00000556689 CHMP7Q8WUX9 453 aaPredicted RBP23.23■■□□□ 1.31
SHMT2-223ENST00000556689 SNAPC4Q5SXM2 1469 aa23.17■■□□□ 1.3
SHMT2-223ENST00000556689 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
SHMT2-223ENST00000556689 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
SHMT2-223ENST00000556689 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
SHMT2-223ENST00000556689 GRIN2BQ13224 1484 aa23.1■■□□□ 1.29
SHMT2-223ENST00000556689 CUX1P39880 1505 aa23.09■■□□□ 1.29
SHMT2-223ENST00000556689 CLASP1Q7Z460 1538 aa23.07■■□□□ 1.28
SHMT2-223ENST00000556689 SYNJ1O43426 1573 aa23.06■■□□□ 1.28
SHMT2-223ENST00000556689 SYNJ2O15056 1496 aa23.04■■□□□ 1.28
SHMT2-223ENST00000556689 GAPVD1Q14C86 1478 aa22.99■■□□□ 1.27
SHMT2-223ENST00000556689 ABCA10Q8WWZ4 1543 aa22.9■■□□□ 1.26
SHMT2-223ENST00000556689 SUPT5HO00267 1087 aaKnown RBP22.87■■□□□ 1.25
SHMT2-223ENST00000556689 AEBP2Q6ZN18 517 aaPredicted RBP22.86■■□□□ 1.25
SHMT2-223ENST00000556689 PBRM1Q86U86 1689 aa22.84■■□□□ 1.25
SHMT2-223ENST00000556689 WRNQ14191 1432 aaPredicted RBP eCLIP22.82■■□□□ 1.24
SHMT2-223ENST00000556689 ABCA5Q8WWZ7 1642 aa22.81■■□□□ 1.24
SHMT2-223ENST00000556689 GRIN2AQ12879 1464 aa22.78■■□□□ 1.24
SHMT2-223ENST00000556689 NUP160Q12769 1436 aa22.72■■□□□ 1.23
SHMT2-223ENST00000556689 ERCC6L2Q5T890 1561 aa22.71■■□□□ 1.23
SHMT2-223ENST00000556689 FHAD1B1AJZ9 1412 aa22.7■■□□□ 1.22
SHMT2-223ENST00000556689 CEP170Q5SW79 1584 aa22.67■■□□□ 1.22
SHMT2-223ENST00000556689 ADAMTS12P58397 1594 aa22.66■■□□□ 1.22
SHMT2-223ENST00000556689 TOP2BQ02880 1626 aa22.63■■□□□ 1.21
SHMT2-223ENST00000556689 JPH4Q96JJ6 628 aa22.62■■□□□ 1.21
SHMT2-223ENST00000556689 ERICH3Q5RHP9 1530 aa22.59■■□□□ 1.21
SHMT2-223ENST00000556689 BIVM-ERCC5R4GMW8 1640 aa22.59■■□□□ 1.21
SHMT2-223ENST00000556689 SHROOM2Q13796 1616 aa22.57■■□□□ 1.2
SHMT2-223ENST00000556689 PRG4Q92954 1404 aaPredicted RBP22.57■■□□□ 1.2
SHMT2-223ENST00000556689 NPM1P06748 294 aaKnown RBP eCLIP22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 274.3 ms