RNA–Protein interactions for RNA: ENST00000556296.1

APEX1-213, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 4

Gene APEX1, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-213ENST00000556296 NISCHQ9Y2I1 1504 aa31.37■■■□□ 2.61
APEX1-213ENST00000556296 ABCC9O60706 1549 aa28.15■■■□□ 2.1
APEX1-213ENST00000556296 CCDC180Q9P1Z9 1646 aa28.12■■■□□ 2.09
APEX1-213ENST00000556296 RB1CC1Q8TDY2 1594 aa26.78■■□□□ 1.88
APEX1-213ENST00000556296 DCAF8L2P0C7V8 631 aa26.6■■□□□ 1.85
APEX1-213ENST00000556296 NACADO15069 1562 aa26.59■■□□□ 1.85
APEX1-213ENST00000556296 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.82
APEX1-213ENST00000556296 PABPN1Q86U42 306 aaKnown RBP eCLIP26.27■■□□□ 1.8
APEX1-213ENST00000556296 MYO15BQ96JP2 1530 aa26.25■■□□□ 1.79
APEX1-213ENST00000556296 UNC13AQ9UPW8 1703 aa26.12■■□□□ 1.77
APEX1-213ENST00000556296 ZCCHC6Q5VYS8 1495 aaKnown RBP26.04■■□□□ 1.76
APEX1-213ENST00000556296 DCAF1Q9Y4B6 1507 aa25.96■■□□□ 1.75
APEX1-213ENST00000556296 BICRAQ9NZM4 1560 aa25.91■■□□□ 1.74
APEX1-213ENST00000556296 SHROOM4Q9ULL8 1493 aa25.71■■□□□ 1.71
APEX1-213ENST00000556296 SCRIBQ14160 1630 aa25.56■■□□□ 1.68
APEX1-213ENST00000556296 CECR2Q9BXF3 1484 aa25.41■■□□□ 1.66
APEX1-213ENST00000556296 CC2D2AQ9P2K1 1620 aa25.36■■□□□ 1.65
APEX1-213ENST00000556296 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
APEX1-213ENST00000556296 NCAPD3P42695 1498 aa24.58■■□□□ 1.52
APEX1-213ENST00000556296 DNAJC5Q9H3Z4 198 aa24.48■■□□□ 1.51
APEX1-213ENST00000556296 ATAD2BQ9ULI0 1458 aa24.45■■□□□ 1.51
APEX1-213ENST00000556296 SMARCA4P51532 1647 aa24.44■■□□□ 1.5
APEX1-213ENST00000556296 ERCC6Q03468 1493 aa24.42■■□□□ 1.5
APEX1-213ENST00000556296 SMARCA2P51531 1590 aa24.41■■□□□ 1.5
APEX1-213ENST00000556296 CUX2O14529 1486 aa24.37■■□□□ 1.49
APEX1-213ENST00000556296 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.49
APEX1-213ENST00000556296 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
APEX1-213ENST00000556296 BAZ1BQ9UIG0 1483 aaKnown RBP24.25■■□□□ 1.47
APEX1-213ENST00000556296 PEG3Q9GZU2 1588 aa24.25■■□□□ 1.47
APEX1-213ENST00000556296 MROH2BQ7Z745 1585 aa24.16■■□□□ 1.46
APEX1-213ENST00000556296 NESP48681 1621 aa24.09■■□□□ 1.45
APEX1-213ENST00000556296 PDS5BQ9NTI5 1447 aa23.99■■□□□ 1.43
APEX1-213ENST00000556296 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
APEX1-213ENST00000556296 WIZO95785 1651 aa23.88■■□□□ 1.41
APEX1-213ENST00000556296 CADPSQ9ULU8 1353 aa23.87■■□□□ 1.41
APEX1-213ENST00000556296 THOC2Q8NI27 1593 aaKnown RBP23.81■■□□□ 1.4
APEX1-213ENST00000556296 KIF21AQ7Z4S6 1674 aa23.76■■□□□ 1.39
APEX1-213ENST00000556296 RSF1Q96T23 1441 aaPredicted RBP23.71■■□□□ 1.39
APEX1-213ENST00000556296 MRC2Q9UBG0 1479 aa23.68■■□□□ 1.38
APEX1-213ENST00000556296 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
APEX1-213ENST00000556296 CEP164Q9UPV0 1460 aa23.58■■□□□ 1.37
APEX1-213ENST00000556296 WDR62O43379 1518 aa23.57■■□□□ 1.36
APEX1-213ENST00000556296 FANCD2Q9BXW9 1451 aa23.55■■□□□ 1.36
APEX1-213ENST00000556296 CFTRP13569 1480 aa23.52■■□□□ 1.36
APEX1-213ENST00000556296 TRIM41Q8WV44 630 aa23.39■■□□□ 1.33
APEX1-213ENST00000556296 OSCARQ8IYS5 282 aa23.35■■□□□ 1.33
APEX1-213ENST00000556296 PRDM2Q13029 1718 aa23.33■■□□□ 1.33
APEX1-213ENST00000556296 CCDC88BA6NC98 1476 aa23.31■■□□□ 1.32
APEX1-213ENST00000556296 URB2Q14146 1524 aaKnown RBP23.28■■□□□ 1.32
APEX1-213ENST00000556296 IFT140Q96RY7 1462 aa23.15■■□□□ 1.3
APEX1-213ENST00000556296 ABCC8Q09428 1581 aa23.12■■□□□ 1.29
APEX1-213ENST00000556296 TOPBP1Q92547 1522 aa23.04■■□□□ 1.28
APEX1-213ENST00000556296 ZNF608Q9ULD9 1512 aaPredicted RBP23■■□□□ 1.27
APEX1-213ENST00000556296 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
APEX1-213ENST00000556296 FBLN2P98095 1184 aa22.86■■□□□ 1.25
APEX1-213ENST00000556296 TARBP1Q13395 1621 aaKnown RBP22.85■■□□□ 1.25
APEX1-213ENST00000556296 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.253e-9■■■■■ 26.9
APEX1-213ENST00000556296 EIF4G3O43432 1585 aaKnown RBP22.83■■□□□ 1.25
APEX1-213ENST00000556296 POLA1P09884 1462 aaPredicted RBP22.8■■□□□ 1.24
APEX1-213ENST00000556296 RIMBP3CA6NJZ7 1639 aa22.8■■□□□ 1.24
APEX1-213ENST00000556296 RIMBP3BA6NNM3 1639 aa22.8■■□□□ 1.24
APEX1-213ENST00000556296 RIMBP3Q9UFD9 1639 aa22.8■■□□□ 1.24
APEX1-213ENST00000556296 SOGA1O94964 1423 aa22.8■■□□□ 1.24
APEX1-213ENST00000556296 ARHGEF11O15085 1522 aa22.79■■□□□ 1.24
APEX1-213ENST00000556296 CYB5RLQ6IPT4 315 aa22.77■■□□□ 1.24
APEX1-213ENST00000556296 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
APEX1-213ENST00000556296 RAD54L2Q9Y4B4 1467 aa22.72■■□□□ 1.23
APEX1-213ENST00000556296 CHMP7Q8WUX9 453 aaPredicted RBP22.7■■□□□ 1.22
APEX1-213ENST00000556296 CUX1P39880 1505 aa22.7■■□□□ 1.22
APEX1-213ENST00000556296 SUPT5HO00267 1087 aaKnown RBP22.68■■□□□ 1.22
APEX1-213ENST00000556296 FGD5Q6ZNL6 1462 aa22.67■■□□□ 1.22
APEX1-213ENST00000556296 CHD1O14646 1710 aa22.65■■□□□ 1.22
APEX1-213ENST00000556296 WDR97A6NE52 1622 aa22.64■■□□□ 1.21
APEX1-213ENST00000556296 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
APEX1-213ENST00000556296 TRHP20396 242 aaPredicted RBP22.6■■□□□ 1.21
APEX1-213ENST00000556296 GRIN2BQ13224 1484 aa22.59■■□□□ 1.21
APEX1-213ENST00000556296 MAGI1Q96QZ7 1491 aaPredicted RBP22.59■■□□□ 1.21
APEX1-213ENST00000556296 ARAP1Q96P48 1450 aa22.54■■□□□ 1.2
APEX1-213ENST00000556296 SYNJ1O43426 1573 aa22.51■■□□□ 1.19
APEX1-213ENST00000556296 SYNJ2O15056 1496 aa22.51■■□□□ 1.19
APEX1-213ENST00000556296 GAPVD1Q14C86 1478 aa22.48■■□□□ 1.19
APEX1-213ENST00000556296 ABCA10Q8WWZ4 1543 aa22.45■■□□□ 1.18
APEX1-213ENST00000556296 CLASP1Q7Z460 1538 aa22.44■■□□□ 1.18
APEX1-213ENST00000556296 PBRM1Q86U86 1689 aa22.44■■□□□ 1.18
APEX1-213ENST00000556296 ABCA5Q8WWZ7 1642 aa22.42■■□□□ 1.18
APEX1-213ENST00000556296 WRNQ14191 1432 aaPredicted RBP eCLIP22.4■■□□□ 1.185e-6■■■■■ 29.2
APEX1-213ENST00000556296 BIVM-ERCC5R4GMW8 1640 aa22.4■■□□□ 1.18
APEX1-213ENST00000556296 TOP2BQ02880 1626 aa22.39■■□□□ 1.17
APEX1-213ENST00000556296 GRIN2AQ12879 1464 aa22.25■■□□□ 1.15
APEX1-213ENST00000556296 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
APEX1-213ENST00000556296 ADAMTS12P58397 1594 aa22.22■■□□□ 1.15
APEX1-213ENST00000556296 NUP160Q12769 1436 aa22.18■■□□□ 1.14
APEX1-213ENST00000556296 ERICH3Q5RHP9 1530 aa22.17■■□□□ 1.14
APEX1-213ENST00000556296 CEP170Q5SW79 1584 aa22.12■■□□□ 1.13
APEX1-213ENST00000556296 JPH4Q96JJ6 628 aa22.08■■□□□ 1.13
APEX1-213ENST00000556296 AEBP2Q6ZN18 517 aaPredicted RBP22.06■■□□□ 1.12
APEX1-213ENST00000556296 SHROOM2Q13796 1616 aa22.05■■□□□ 1.12
APEX1-213ENST00000556296 ERCC6L2Q5T890 1561 aa22.04■■□□□ 1.12
APEX1-213ENST00000556296 PRG4Q92954 1404 aaPredicted RBP22.02■■□□□ 1.12
APEX1-213ENST00000556296 NPM1P06748 294 aaKnown RBP eCLIP22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms