RNA–Protein interactions for RNA: ENST00000555740.5

PCNX4-210, Transcript of pecanex 4, humanhuman

TSL 2

Gene PCNX4, Length 2,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-210ENST00000555740 AEBP2Q6ZN18 517 aaPredicted RBP19.41■□□□□ 0.7
PCNX4-210ENST00000555740 CHIC1Q5VXU3 224 aa19.39■□□□□ 0.69
PCNX4-210ENST00000555740 NISCHQ9Y2I1 1504 aa18.42■□□□□ 0.54
PCNX4-210ENST00000555740 PHF23Q9BUL5 403 aaPredicted RBP17.39■□□□□ 0.37
PCNX4-210ENST00000555740 CCDC180Q9P1Z9 1646 aa16.34■□□□□ 0.21
PCNX4-210ENST00000555740 PLPPR3Q6T4P5 718 aa15.99■□□□□ 0.15
PCNX4-210ENST00000555740 SENP3Q9H4L4 574 aaPredicted RBP15.96■□□□□ 0.15
PCNX4-210ENST00000555740 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
PCNX4-210ENST00000555740 ADRA2BP18089 450 aa15.4■□□□□ 0.06
PCNX4-210ENST00000555740 DCAF1Q9Y4B6 1507 aa15.37■□□□□ 0.05
PCNX4-210ENST00000555740 ABCC9O60706 1549 aa15.31■□□□□ 0.04
PCNX4-210ENST00000555740 MYO15BQ96JP2 1530 aa15.29■□□□□ 0.04
PCNX4-210ENST00000555740 PPP6R1Q9UPN7 881 aa15.19■□□□□ 0.02
PCNX4-210ENST00000555740 NACADO15069 1562 aa15.17■□□□□ 0.02
PCNX4-210ENST00000555740 RB1CC1Q8TDY2 1594 aa15.06■□□□□ 0
PCNX4-210ENST00000555740 KCNA4P22459 653 aa15.03■□□□□ -0
PCNX4-210ENST00000555740 EHMT2Q96KQ7 1210 aa15.02□□□□□ -0.01
PCNX4-210ENST00000555740 FOXD1Q16676 465 aa14.99□□□□□ -0.01
PCNX4-210ENST00000555740 DCAF8L2P0C7V8 631 aa14.83□□□□□ -0.04
PCNX4-210ENST00000555740 UNC13AQ9UPW8 1703 aa14.81□□□□□ -0.04
PCNX4-210ENST00000555740 SCRIBQ14160 1630 aa14.77□□□□□ -0.04
PCNX4-210ENST00000555740 BICRAQ9NZM4 1560 aa14.62□□□□□ -0.07
PCNX4-210ENST00000555740 SHROOM4Q9ULL8 1493 aa14.6□□□□□ -0.07
PCNX4-210ENST00000555740 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
PCNX4-210ENST00000555740 PPP4R3CPQ6ZMV5 832 aa14.31□□□□□ -0.12
PCNX4-210ENST00000555740 PIAS4Q8N2W9 510 aaPredicted RBP14.28□□□□□ -0.12
PCNX4-210ENST00000555740 BAZ1AQ9NRL2 1556 aaPredicted RBP14.27□□□□□ -0.13
PCNX4-210ENST00000555740 SLC4A1APQ9BWU0 796 aaKnown RBP14.26□□□□□ -0.13
PCNX4-210ENST00000555740 PABPN1Q86U42 306 aaKnown RBP eCLIP14.26□□□□□ -0.13
PCNX4-210ENST00000555740 SMARCA4P51532 1647 aa14.24□□□□□ -0.13
PCNX4-210ENST00000555740 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
PCNX4-210ENST00000555740 MROH2BQ7Z745 1585 aa14.16□□□□□ -0.14
PCNX4-210ENST00000555740 PEG3Q9GZU2 1588 aa14.16□□□□□ -0.14
PCNX4-210ENST00000555740 EIF4G1Q04637 1599 aaKnown RBP14.16□□□□□ -0.14
PCNX4-210ENST00000555740 RSF1Q96T23 1441 aaPredicted RBP14.13□□□□□ -0.15
PCNX4-210ENST00000555740 SMARCA2P51531 1590 aa14.05□□□□□ -0.16
PCNX4-210ENST00000555740 WIZO95785 1651 aa14.05□□□□□ -0.16
PCNX4-210ENST00000555740 NPM3O75607 178 aaKnown RBP14.02□□□□□ -0.16
PCNX4-210ENST00000555740 HMGXB3Q12766 1538 aa14□□□□□ -0.17
PCNX4-210ENST00000555740 ATAD2BQ9ULI0 1458 aa13.99□□□□□ -0.17
PCNX4-210ENST00000555740 TOP2AP11388 1531 aaKnown RBP13.99□□□□□ -0.17
PCNX4-210ENST00000555740 CC2D2AQ9P2K1 1620 aa13.98□□□□□ -0.17
PCNX4-210ENST00000555740 ZBTB22O15209 634 aa13.95□□□□□ -0.18
PCNX4-210ENST00000555740 NCAPD3P42695 1498 aa13.94□□□□□ -0.18
PCNX4-210ENST00000555740 BAZ1BQ9UIG0 1483 aaKnown RBP13.88□□□□□ -0.19
PCNX4-210ENST00000555740 NCBP3Q53F19 620 aaKnown RBP13.88□□□□□ -0.19
PCNX4-210ENST00000555740 SUPT5HO00267 1087 aaKnown RBP13.84□□□□□ -0.19
PCNX4-210ENST00000555740 CCDC88BA6NC98 1476 aa13.72□□□□□ -0.21
PCNX4-210ENST00000555740 PRDM2Q13029 1718 aa13.67□□□□□ -0.22
PCNX4-210ENST00000555740 MAPK8IP2Q13387 824 aaPredicted RBP13.62□□□□□ -0.23
PCNX4-210ENST00000555740 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
PCNX4-210ENST00000555740 DNAJC5BQ9UF47 199 aa13.59□□□□□ -0.23
PCNX4-210ENST00000555740 CFTRP13569 1480 aa13.56□□□□□ -0.24
PCNX4-210ENST00000555740 LAMC3Q9Y6N6 1575 aa13.55□□□□□ -0.24
PCNX4-210ENST00000555740 CADPSQ9ULU8 1353 aa13.49□□□□□ -0.25
PCNX4-210ENST00000555740 NESP48681 1621 aa13.4□□□□□ -0.27
PCNX4-210ENST00000555740 KIF21AQ7Z4S6 1674 aa13.38□□□□□ -0.27
PCNX4-210ENST00000555740 BIVM-ERCC5R4GMW8 1640 aa13.38□□□□□ -0.27
PCNX4-210ENST00000555740 SCAF1Q9H7N4 1312 aaKnown RBP13.37□□□□□ -0.27
PCNX4-210ENST00000555740 FOXD4L1Q9NU39 408 aa13.36□□□□□ -0.27
PCNX4-210ENST00000555740 FANCD2Q9BXW9 1451 aa13.36□□□□□ -0.27
PCNX4-210ENST00000555740 PDS5BQ9NTI5 1447 aa13.34□□□□□ -0.27
PCNX4-210ENST00000555740 ABCC8Q09428 1581 aa13.33□□□□□ -0.27
PCNX4-210ENST00000555740 TOP2BQ02880 1626 aa13.33□□□□□ -0.28
PCNX4-210ENST00000555740 CEP164Q9UPV0 1460 aa13.32□□□□□ -0.28
PCNX4-210ENST00000555740 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
PCNX4-210ENST00000555740 DNMBPQ6XZF7 1577 aa13.3□□□□□ -0.28
PCNX4-210ENST00000555740 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
PCNX4-210ENST00000555740 CUX1P39880 1505 aa13.29□□□□□ -0.28
PCNX4-210ENST00000555740 THOC2Q8NI27 1593 aaKnown RBP13.27□□□□□ -0.28
PCNX4-210ENST00000555740 WDR62O43379 1518 aa13.24□□□□□ -0.29
PCNX4-210ENST00000555740 MRC2Q9UBG0 1479 aa13.24□□□□□ -0.29
PCNX4-210ENST00000555740 URB2Q14146 1524 aaKnown RBP13.23□□□□□ -0.29
PCNX4-210ENST00000555740 RTN4Q9NQC3 1192 aaKnown RBP13.22□□□□□ -0.29
PCNX4-210ENST00000555740 TOPBP1Q92547 1522 aa13.22□□□□□ -0.29
PCNX4-210ENST00000555740 MSH5O43196 834 aa13.19□□□□□ -0.3
PCNX4-210ENST00000555740 WDR97A6NE52 1622 aa13.19□□□□□ -0.3
PCNX4-210ENST00000555740 ERCC6Q03468 1493 aa13.17□□□□□ -0.3
PCNX4-210ENST00000555740 FGD5Q6ZNL6 1462 aa13.15□□□□□ -0.3
PCNX4-210ENST00000555740 RNF216Q9NWF9 866 aaPredicted RBP13.14□□□□□ -0.31
PCNX4-210ENST00000555740 POLA1P09884 1462 aaPredicted RBP13.13□□□□□ -0.31
PCNX4-210ENST00000555740 SLC4A2P04920 1241 aa13.12□□□□□ -0.31
PCNX4-210ENST00000555740 TARBP1Q13395 1621 aaKnown RBP13.11□□□□□ -0.31
PCNX4-210ENST00000555740 TRIM41Q8WV44 630 aa13.1□□□□□ -0.31
PCNX4-210ENST00000555740 ABCA10Q8WWZ4 1543 aa13.09□□□□□ -0.31
PCNX4-210ENST00000555740 EEA1Q15075 1411 aa13.08□□□□□ -0.32
PCNX4-210ENST00000555740 ABCA5Q8WWZ7 1642 aa13.07□□□□□ -0.32
PCNX4-210ENST00000555740 CUX2O14529 1486 aa13.06□□□□□ -0.32
PCNX4-210ENST00000555740 IFT140Q96RY7 1462 aa13.04□□□□□ -0.32
PCNX4-210ENST00000555740 SOGA1O94964 1423 aa13□□□□□ -0.33
PCNX4-210ENST00000555740 RAD54L2Q9Y4B4 1467 aa13□□□□□ -0.33
PCNX4-210ENST00000555740 PBRM1Q86U86 1689 aa12.99□□□□□ -0.33
PCNX4-210ENST00000555740 SLC24A1O60721 1099 aa12.99□□□□□ -0.33
PCNX4-210ENST00000555740 KIF27Q86VH2 1401 aa12.98□□□□□ -0.33
PCNX4-210ENST00000555740 KIF21BO75037 1637 aa12.98□□□□□ -0.33
PCNX4-210ENST00000555740 CUL7Q14999 1698 aa12.96□□□□□ -0.33
PCNX4-210ENST00000555740 EIF4G3O43432 1585 aaKnown RBP12.96□□□□□ -0.33
PCNX4-210ENST00000555740 ERICH3Q5RHP9 1530 aa12.96□□□□□ -0.34
PCNX4-210ENST00000555740 RUSC2Q8N2Y8 1516 aa12.95□□□□□ -0.34
PCNX4-210ENST00000555740 HOXD11P31277 338 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms