RNA–Protein interactions for RNA: ENST00000555301.1

CHD8-208, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 2

Gene CHD8, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-208ENST00000555301 NISCHQ9Y2I1 1504 aa33.89■■■■□ 3.02
CHD8-208ENST00000555301 CCDC180Q9P1Z9 1646 aa29.91■■■□□ 2.38
CHD8-208ENST00000555301 ABCC9O60706 1549 aa28.94■■■□□ 2.22
CHD8-208ENST00000555301 ZCCHC6Q5VYS8 1495 aaKnown RBP28.32■■■□□ 2.12
CHD8-208ENST00000555301 DCAF8L2P0C7V8 631 aa28.21■■■□□ 2.11
CHD8-208ENST00000555301 NACADO15069 1562 aa28.09■■■□□ 2.09
CHD8-208ENST00000555301 DCAF1Q9Y4B6 1507 aa28.08■■■□□ 2.09
CHD8-208ENST00000555301 MYO15BQ96JP2 1530 aa28.08■■■□□ 2.08
CHD8-208ENST00000555301 RB1CC1Q8TDY2 1594 aa28.02■■■□□ 2.08
CHD8-208ENST00000555301 SCRIBQ14160 1630 aa27.32■■□□□ 1.96
CHD8-208ENST00000555301 UNC13AQ9UPW8 1703 aa27.21■■□□□ 1.95
CHD8-208ENST00000555301 PABPN1Q86U42 306 aaKnown RBP eCLIP27.14■■□□□ 1.94
CHD8-208ENST00000555301 BICRAQ9NZM4 1560 aa27.1■■□□□ 1.93
CHD8-208ENST00000555301 SHROOM4Q9ULL8 1493 aa27■■□□□ 1.91
CHD8-208ENST00000555301 EIF4G1Q04637 1599 aaKnown RBP26.39■■□□□ 1.82
CHD8-208ENST00000555301 CECR2Q9BXF3 1484 aa26.35■■□□□ 1.81
CHD8-208ENST00000555301 BAZ1AQ9NRL2 1556 aaPredicted RBP26.26■■□□□ 1.79
CHD8-208ENST00000555301 DNAJC5BQ9UF47 199 aa26.21■■□□□ 1.79
CHD8-208ENST00000555301 SMARCA4P51532 1647 aa26.18■■□□□ 1.78
CHD8-208ENST00000555301 CC2D2AQ9P2K1 1620 aa26.17■■□□□ 1.78
CHD8-208ENST00000555301 MROH2BQ7Z745 1585 aa26.11■■□□□ 1.77
CHD8-208ENST00000555301 ATAD2BQ9ULI0 1458 aa25.99■■□□□ 1.75
CHD8-208ENST00000555301 RSF1Q96T23 1441 aaPredicted RBP25.98■■□□□ 1.75
CHD8-208ENST00000555301 SMARCA2P51531 1590 aa25.98■■□□□ 1.75
CHD8-208ENST00000555301 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.74
CHD8-208ENST00000555301 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
CHD8-208ENST00000555301 HMGXB3Q12766 1538 aa25.82■■□□□ 1.72
CHD8-208ENST00000555301 BAZ1BQ9UIG0 1483 aaKnown RBP25.8■■□□□ 1.72
CHD8-208ENST00000555301 WIZO95785 1651 aa25.8■■□□□ 1.72
CHD8-208ENST00000555301 SUPT5HO00267 1087 aaKnown RBP25.63■■□□□ 1.69
CHD8-208ENST00000555301 TOP2AP11388 1531 aaKnown RBP25.61■■□□□ 1.69
CHD8-208ENST00000555301 CCDC88BA6NC98 1476 aa25.32■■□□□ 1.64
CHD8-208ENST00000555301 CADPSQ9ULU8 1353 aa25.22■■□□□ 1.63
CHD8-208ENST00000555301 LAMC3Q9Y6N6 1575 aa25.16■■□□□ 1.62
CHD8-208ENST00000555301 NESP48681 1621 aa25.14■■□□□ 1.61
CHD8-208ENST00000555301 CFTRP13569 1480 aa25.13■■□□□ 1.61
CHD8-208ENST00000555301 PDS5BQ9NTI5 1447 aa25.03■■□□□ 1.6
CHD8-208ENST00000555301 ERCC6Q03468 1493 aa24.96■■□□□ 1.59
CHD8-208ENST00000555301 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.58
CHD8-208ENST00000555301 CEP164Q9UPV0 1460 aa24.83■■□□□ 1.57
CHD8-208ENST00000555301 PRDM2Q13029 1718 aa24.81■■□□□ 1.56
CHD8-208ENST00000555301 KIF21AQ7Z4S6 1674 aa24.78■■□□□ 1.56
CHD8-208ENST00000555301 MRC2Q9UBG0 1479 aa24.71■■□□□ 1.55
CHD8-208ENST00000555301 THOC2Q8NI27 1593 aaKnown RBP24.65■■□□□ 1.54
CHD8-208ENST00000555301 ABCC8Q09428 1581 aa24.6■■□□□ 1.53
CHD8-208ENST00000555301 WDR62O43379 1518 aa24.6■■□□□ 1.53
CHD8-208ENST00000555301 URB2Q14146 1524 aaKnown RBP24.6■■□□□ 1.53
CHD8-208ENST00000555301 CUX2O14529 1486 aa24.55■■□□□ 1.52
CHD8-208ENST00000555301 TOPBP1Q92547 1522 aa24.53■■□□□ 1.52
CHD8-208ENST00000555301 DNMBPQ6XZF7 1577 aa24.52■■□□□ 1.52
CHD8-208ENST00000555301 WRNQ14191 1432 aaPredicted RBP eCLIP24.51■■□□□ 1.51
CHD8-208ENST00000555301 CUX1P39880 1505 aa24.46■■□□□ 1.51
CHD8-208ENST00000555301 TOP2BQ02880 1626 aa24.36■■□□□ 1.49
CHD8-208ENST00000555301 POLA1P09884 1462 aaPredicted RBP24.36■■□□□ 1.49
CHD8-208ENST00000555301 SYNJ1O43426 1573 aa24.35■■□□□ 1.49
CHD8-208ENST00000555301 FGD5Q6ZNL6 1462 aa24.34■■□□□ 1.49
CHD8-208ENST00000555301 BIVM-ERCC5R4GMW8 1640 aa24.32■■□□□ 1.48
CHD8-208ENST00000555301 IFT140Q96RY7 1462 aa24.32■■□□□ 1.48
CHD8-208ENST00000555301 SOGA1O94964 1423 aa24.28■■□□□ 1.48
CHD8-208ENST00000555301 TRIM41Q8WV44 630 aa24.23■■□□□ 1.47
CHD8-208ENST00000555301 RAD54L2Q9Y4B4 1467 aa24.23■■□□□ 1.47
CHD8-208ENST00000555301 TARBP1Q13395 1621 aaKnown RBP24.19■■□□□ 1.46
CHD8-208ENST00000555301 ABCA10Q8WWZ4 1543 aa24.15■■□□□ 1.46
CHD8-208ENST00000555301 CHIC1Q5VXU3 224 aa24.14■■□□□ 1.45
CHD8-208ENST00000555301 ZNF608Q9ULD9 1512 aaPredicted RBP24.13■■□□□ 1.45
CHD8-208ENST00000555301 TDRD9Q8NDG6 1382 aaKnown RBP24.09■■□□□ 1.45
CHD8-208ENST00000555301 WDR97A6NE52 1622 aa24.07■■□□□ 1.44
CHD8-208ENST00000555301 AQRO60306 1485 aaKnown RBP eCLIP24.06■■□□□ 1.449e-7■■■■□ 25.3
CHD8-208ENST00000555301 EIF4G3O43432 1585 aaKnown RBP24.02■■□□□ 1.44
CHD8-208ENST00000555301 GAPVD1Q14C86 1478 aa24■■□□□ 1.43
CHD8-208ENST00000555301 KIF27Q86VH2 1401 aa23.98■■□□□ 1.43
CHD8-208ENST00000555301 ABCA5Q8WWZ7 1642 aa23.96■■□□□ 1.43
CHD8-208ENST00000555301 GRIN2BQ13224 1484 aa23.96■■□□□ 1.43
CHD8-208ENST00000555301 ERICH3Q5RHP9 1530 aa23.86■■□□□ 1.41
CHD8-208ENST00000555301 SNAPC4Q5SXM2 1469 aa23.85■■□□□ 1.41
CHD8-208ENST00000555301 MAGI1Q96QZ7 1491 aaPredicted RBP23.85■■□□□ 1.41
CHD8-208ENST00000555301 IGF1RP08069 1367 aa23.82■■□□□ 1.4
CHD8-208ENST00000555301 PBRM1Q86U86 1689 aa23.82■■□□□ 1.4
CHD8-208ENST00000555301 RUSC2Q8N2Y8 1516 aa23.8■■□□□ 1.4
CHD8-208ENST00000555301 EEA1Q15075 1411 aa23.8■■□□□ 1.4
CHD8-208ENST00000555301 FHAD1B1AJZ9 1412 aa23.76■■□□□ 1.39
CHD8-208ENST00000555301 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
CHD8-208ENST00000555301 CHMP7Q8WUX9 453 aaPredicted RBP23.75■■□□□ 1.39
CHD8-208ENST00000555301 FBLN2P98095 1184 aa23.74■■□□□ 1.39
CHD8-208ENST00000555301 ADAMTS12P58397 1594 aa23.71■■□□□ 1.39
CHD8-208ENST00000555301 CARMIL1Q5VZK9 1371 aa23.7■■□□□ 1.38
CHD8-208ENST00000555301 CSRNP3Q8WYN3 585 aa23.7■■□□□ 1.38
CHD8-208ENST00000555301 CUL7Q14999 1698 aa23.68■■□□□ 1.38
CHD8-208ENST00000555301 FAM9AQ8IZU1 332 aaPredicted RBP23.67■■□□□ 1.38
CHD8-208ENST00000555301 OSCARQ8IYS5 282 aa23.64■■□□□ 1.37
CHD8-208ENST00000555301 GRIN2AQ12879 1464 aa23.63■■□□□ 1.37
CHD8-208ENST00000555301 PRXQ9BXM0 1461 aa23.6■■□□□ 1.37
CHD8-208ENST00000555301 RAPGEF2Q9Y4G8 1499 aa23.59■■□□□ 1.37
CHD8-208ENST00000555301 CHD1O14646 1710 aa23.58■■□□□ 1.37
CHD8-208ENST00000555301 NUP160Q12769 1436 aa23.52■■□□□ 1.36
CHD8-208ENST00000555301 CEP170Q5SW79 1584 aa23.45■■□□□ 1.34
CHD8-208ENST00000555301 KIF21BO75037 1637 aa23.44■■□□□ 1.34
CHD8-208ENST00000555301 CLASP1Q7Z460 1538 aa23.41■■□□□ 1.34
CHD8-208ENST00000555301 KIAA0586Q9BVV6 1533 aa23.4■■□□□ 1.34
CHD8-208ENST00000555301 GOLGA3Q08378 1498 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms