RNA–Protein interactions for RNA: ENST00000555052.1

ARHGEF40-205, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 3

Gene ARHGEF40, Length 935 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-205ENST00000555052 NISCHQ9Y2I1 1504 aa39.5■■■■□ 3.91
ARHGEF40-205ENST00000555052 CCDC180Q9P1Z9 1646 aa35.43■■■■□ 3.26
ARHGEF40-205ENST00000555052 ABCC9O60706 1549 aa35.34■■■■□ 3.25
ARHGEF40-205ENST00000555052 RB1CC1Q8TDY2 1594 aa33.68■■■□□ 2.98
ARHGEF40-205ENST00000555052 NACADO15069 1562 aa33.48■■■□□ 2.95
ARHGEF40-205ENST00000555052 DCAF8L2P0C7V8 631 aa33.16■■■□□ 2.9
ARHGEF40-205ENST00000555052 DNAJC5BQ9UF47 199 aa33.15■■■□□ 2.9
ARHGEF40-205ENST00000555052 MYO15BQ96JP2 1530 aa33.08■■■□□ 2.89
ARHGEF40-205ENST00000555052 UNC13AQ9UPW8 1703 aa32.94■■■□□ 2.86
ARHGEF40-205ENST00000555052 PABPN1Q86U42 306 aaKnown RBP eCLIP32.89■■■□□ 2.86
ARHGEF40-205ENST00000555052 ZCCHC6Q5VYS8 1495 aaKnown RBP32.76■■■□□ 2.84
ARHGEF40-205ENST00000555052 BICRAQ9NZM4 1560 aa32.75■■■□□ 2.83
ARHGEF40-205ENST00000555052 DCAF1Q9Y4B6 1507 aa32.67■■■□□ 2.82
ARHGEF40-205ENST00000555052 SHROOM4Q9ULL8 1493 aa32.33■■■□□ 2.77
ARHGEF40-205ENST00000555052 SCRIBQ14160 1630 aa32.25■■■□□ 2.75
ARHGEF40-205ENST00000555052 CC2D2AQ9P2K1 1620 aa31.96■■■□□ 2.71
ARHGEF40-205ENST00000555052 EIF4G1Q04637 1599 aaKnown RBP31.91■■■□□ 2.7
ARHGEF40-205ENST00000555052 CECR2Q9BXF3 1484 aa31.85■■■□□ 2.69
ARHGEF40-205ENST00000555052 NCAPD3P42695 1498 aa30.92■■■□□ 2.54
ARHGEF40-205ENST00000555052 ATAD2BQ9ULI0 1458 aa30.82■■■□□ 2.53
ARHGEF40-205ENST00000555052 SMARCA4P51532 1647 aa30.8■■■□□ 2.52
ARHGEF40-205ENST00000555052 SMARCA2P51531 1590 aa30.73■■■□□ 2.51
ARHGEF40-205ENST00000555052 HMGXB3Q12766 1538 aa30.71■■■□□ 2.51
ARHGEF40-205ENST00000555052 BAZ1AQ9NRL2 1556 aaPredicted RBP30.64■■■□□ 2.5
ARHGEF40-205ENST00000555052 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
ARHGEF40-205ENST00000555052 ERCC6Q03468 1493 aa30.5■■■□□ 2.47
ARHGEF40-205ENST00000555052 BAZ1BQ9UIG0 1483 aaKnown RBP30.5■■■□□ 2.47
ARHGEF40-205ENST00000555052 CUX2O14529 1486 aa30.49■■■□□ 2.47
ARHGEF40-205ENST00000555052 MROH2BQ7Z745 1585 aa30.42■■■□□ 2.46
ARHGEF40-205ENST00000555052 DNAJC5Q9H3Z4 198 aa30.4■■■□□ 2.46
ARHGEF40-205ENST00000555052 NESP48681 1621 aa30.4■■■□□ 2.46
ARHGEF40-205ENST00000555052 LAMC3Q9Y6N6 1575 aa30.2■■■□□ 2.43
ARHGEF40-205ENST00000555052 THOC2Q8NI27 1593 aaKnown RBP30.12■■■□□ 2.41
ARHGEF40-205ENST00000555052 WIZO95785 1651 aa30.04■■■□□ 2.4
ARHGEF40-205ENST00000555052 KIF21AQ7Z4S6 1674 aa30.01■■■□□ 2.39
ARHGEF40-205ENST00000555052 PDS5BQ9NTI5 1447 aa30■■■□□ 2.39
ARHGEF40-205ENST00000555052 CADPSQ9ULU8 1353 aa29.96■■■□□ 2.39
ARHGEF40-205ENST00000555052 RSF1Q96T23 1441 aaPredicted RBP29.81■■■□□ 2.36
ARHGEF40-205ENST00000555052 MRC2Q9UBG0 1479 aa29.76■■■□□ 2.35
ARHGEF40-205ENST00000555052 WDR62O43379 1518 aa29.71■■■□□ 2.35
ARHGEF40-205ENST00000555052 TOP2AP11388 1531 aaKnown RBP29.69■■■□□ 2.34
ARHGEF40-205ENST00000555052 CFTRP13569 1480 aa29.65■■■□□ 2.34
ARHGEF40-205ENST00000555052 CEP164Q9UPV0 1460 aa29.63■■■□□ 2.33
ARHGEF40-205ENST00000555052 FANCD2Q9BXW9 1451 aa29.61■■■□□ 2.33
ARHGEF40-205ENST00000555052 URB2Q14146 1524 aaKnown RBP29.39■■■□□ 2.3
ARHGEF40-205ENST00000555052 CCDC88BA6NC98 1476 aa29.34■■■□□ 2.29
ARHGEF40-205ENST00000555052 PRDM2Q13029 1718 aa29.34■■■□□ 2.29
ARHGEF40-205ENST00000555052 TOPBP1Q92547 1522 aa29.07■■■□□ 2.24
ARHGEF40-205ENST00000555052 IFT140Q96RY7 1462 aa29.06■■■□□ 2.24
ARHGEF40-205ENST00000555052 OSCARQ8IYS5 282 aa29.03■■■□□ 2.24
ARHGEF40-205ENST00000555052 ZNF608Q9ULD9 1512 aaPredicted RBP29.01■■■□□ 2.23
ARHGEF40-205ENST00000555052 TRIM41Q8WV44 630 aa29■■■□□ 2.23
ARHGEF40-205ENST00000555052 ABCC8Q09428 1581 aa28.99■■■□□ 2.23
ARHGEF40-205ENST00000555052 DNMBPQ6XZF7 1577 aa28.97■■■□□ 2.23
ARHGEF40-205ENST00000555052 EIF4G3O43432 1585 aaKnown RBP28.85■■■□□ 2.21
ARHGEF40-205ENST00000555052 TARBP1Q13395 1621 aaKnown RBP28.83■■■□□ 2.21
ARHGEF40-205ENST00000555052 POLA1P09884 1462 aaPredicted RBP28.78■■■□□ 2.2
ARHGEF40-205ENST00000555052 AQRO60306 1485 aaKnown RBP eCLIP28.73■■■□□ 2.197e-8■■□□□ 11.5
ARHGEF40-205ENST00000555052 RIMBP3CA6NJZ7 1639 aa28.7■■■□□ 2.19
ARHGEF40-205ENST00000555052 RIMBP3BA6NNM3 1639 aa28.7■■■□□ 2.19
ARHGEF40-205ENST00000555052 RIMBP3Q9UFD9 1639 aa28.7■■■□□ 2.19
ARHGEF40-205ENST00000555052 RAD54L2Q9Y4B4 1467 aa28.65■■■□□ 2.18
ARHGEF40-205ENST00000555052 ARHGEF11O15085 1522 aa28.63■■■□□ 2.17
ARHGEF40-205ENST00000555052 CHD1O14646 1710 aa28.61■■■□□ 2.17
ARHGEF40-205ENST00000555052 SOGA1O94964 1423 aa28.6■■■□□ 2.17
ARHGEF40-205ENST00000555052 CUX1P39880 1505 aa28.59■■■□□ 2.17
ARHGEF40-205ENST00000555052 FGD5Q6ZNL6 1462 aa28.59■■■□□ 2.17
ARHGEF40-205ENST00000555052 TDRD9Q8NDG6 1382 aaKnown RBP28.55■■■□□ 2.16
ARHGEF40-205ENST00000555052 WDR97A6NE52 1622 aa28.54■■■□□ 2.16
ARHGEF40-205ENST00000555052 FBLN2P98095 1184 aa28.45■■■□□ 2.14
ARHGEF40-205ENST00000555052 SNAPC4Q5SXM2 1469 aa28.45■■■□□ 2.14
ARHGEF40-205ENST00000555052 SUPT5HO00267 1087 aaKnown RBP28.4■■■□□ 2.14
ARHGEF40-205ENST00000555052 MAGI1Q96QZ7 1491 aaPredicted RBP28.4■■■□□ 2.14
ARHGEF40-205ENST00000555052 GRIN2BQ13224 1484 aa28.38■■■□□ 2.13
ARHGEF40-205ENST00000555052 ARAP1Q96P48 1450 aa28.36■■■□□ 2.13
ARHGEF40-205ENST00000555052 CYB5RLQ6IPT4 315 aa28.34■■■□□ 2.13
ARHGEF40-205ENST00000555052 CLASP1Q7Z460 1538 aa28.33■■■□□ 2.13
ARHGEF40-205ENST00000555052 ABCA10Q8WWZ4 1543 aa28.29■■■□□ 2.12
ARHGEF40-205ENST00000555052 SYNJ2O15056 1496 aa28.29■■■□□ 2.12
ARHGEF40-205ENST00000555052 GAPVD1Q14C86 1478 aa28.28■■■□□ 2.12
ARHGEF40-205ENST00000555052 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
ARHGEF40-205ENST00000555052 SYNJ1O43426 1573 aa28.27■■■□□ 2.12
ARHGEF40-205ENST00000555052 PBRM1Q86U86 1689 aa28.26■■■□□ 2.12
ARHGEF40-205ENST00000555052 ABCA5Q8WWZ7 1642 aa28.25■■■□□ 2.11
ARHGEF40-205ENST00000555052 WRNQ14191 1432 aaPredicted RBP eCLIP28.15■■■□□ 2.1
ARHGEF40-205ENST00000555052 BIVM-ERCC5R4GMW8 1640 aa28.14■■■□□ 2.1
ARHGEF40-205ENST00000555052 TOP2BQ02880 1626 aa28.14■■■□□ 2.09
ARHGEF40-205ENST00000555052 ADAMTS12P58397 1594 aa28.03■■■□□ 2.08
ARHGEF40-205ENST00000555052 GRIN2AQ12879 1464 aa28.02■■■□□ 2.08
ARHGEF40-205ENST00000555052 TRHP20396 242 aaPredicted RBP27.97■■■□□ 2.07
ARHGEF40-205ENST00000555052 NUP160Q12769 1436 aa27.96■■■□□ 2.07
ARHGEF40-205ENST00000555052 FHAD1B1AJZ9 1412 aa27.93■■■□□ 2.06
ARHGEF40-205ENST00000555052 ERICH3Q5RHP9 1530 aa27.93■■■□□ 2.06
ARHGEF40-205ENST00000555052 CEP170Q5SW79 1584 aa27.93■■■□□ 2.06
ARHGEF40-205ENST00000555052 ERCC6L2Q5T890 1561 aa27.87■■■□□ 2.05
ARHGEF40-205ENST00000555052 SHROOM2Q13796 1616 aa27.83■■■□□ 2.05
ARHGEF40-205ENST00000555052 RUSC2Q8N2Y8 1516 aa27.63■■■□□ 2.01
ARHGEF40-205ENST00000555052 PRG4Q92954 1404 aaPredicted RBP27.63■■■□□ 2.01
ARHGEF40-205ENST00000555052 JPH4Q96JJ6 628 aa27.6■■■□□ 2.01
ARHGEF40-205ENST00000555052 IGF1RP08069 1367 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 150.4 ms