RNA–Protein interactions for RNA: ENST00000554739.5

MTHFD1-208, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 3

Gene MTHFD1, Length 688 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-208ENST00000554739 NISCHQ9Y2I1 1504 aa31.27■■■□□ 2.6
MTHFD1-208ENST00000554739 CCDC180Q9P1Z9 1646 aa27.67■■■□□ 2.02
MTHFD1-208ENST00000554739 ABCC9O60706 1549 aa27.16■■□□□ 1.94
MTHFD1-208ENST00000554739 DCAF8L2P0C7V8 631 aa26.19■■□□□ 1.78
MTHFD1-208ENST00000554739 NACADO15069 1562 aa26.08■■□□□ 1.77
MTHFD1-208ENST00000554739 RB1CC1Q8TDY2 1594 aa26.08■■□□□ 1.77
MTHFD1-208ENST00000554739 ZCCHC6Q5VYS8 1495 aaKnown RBP26.03■■□□□ 1.76
MTHFD1-208ENST00000554739 MYO15BQ96JP2 1530 aa25.96■■□□□ 1.75
MTHFD1-208ENST00000554739 DCAF1Q9Y4B6 1507 aa25.86■■□□□ 1.73
MTHFD1-208ENST00000554739 PABPN1Q86U42 306 aaKnown RBP eCLIP25.47■■□□□ 1.67
MTHFD1-208ENST00000554739 UNC13AQ9UPW8 1703 aa25.39■■□□□ 1.65
MTHFD1-208ENST00000554739 BICRAQ9NZM4 1560 aa25.33■■□□□ 1.65
MTHFD1-208ENST00000554739 SCRIBQ14160 1630 aa25.29■■□□□ 1.64
MTHFD1-208ENST00000554739 SHROOM4Q9ULL8 1493 aa25.04■■□□□ 1.6
MTHFD1-208ENST00000554739 DNAJC5BQ9UF47 199 aa25.02■■□□□ 1.6
MTHFD1-208ENST00000554739 EIF4G1Q04637 1599 aaKnown RBP24.64■■□□□ 1.54
MTHFD1-208ENST00000554739 CC2D2AQ9P2K1 1620 aa24.52■■□□□ 1.52
MTHFD1-208ENST00000554739 CECR2Q9BXF3 1484 aa24.41■■□□□ 1.5
MTHFD1-208ENST00000554739 SMARCA4P51532 1647 aa24.2■■□□□ 1.46
MTHFD1-208ENST00000554739 BAZ1AQ9NRL2 1556 aaPredicted RBP24.2■■□□□ 1.46
MTHFD1-208ENST00000554739 NCAPD3P42695 1498 aa24.14■■□□□ 1.46
MTHFD1-208ENST00000554739 ATAD2BQ9ULI0 1458 aa24.13■■□□□ 1.45
MTHFD1-208ENST00000554739 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
MTHFD1-208ENST00000554739 SMARCA2P51531 1590 aa24.05■■□□□ 1.44
MTHFD1-208ENST00000554739 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
MTHFD1-208ENST00000554739 HMGXB3Q12766 1538 aa23.94■■□□□ 1.42
MTHFD1-208ENST00000554739 BAZ1BQ9UIG0 1483 aaKnown RBP23.9■■□□□ 1.42
MTHFD1-208ENST00000554739 RSF1Q96T23 1441 aaPredicted RBP23.88■■□□□ 1.41
MTHFD1-208ENST00000554739 WIZO95785 1651 aa23.79■■□□□ 1.4
MTHFD1-208ENST00000554739 TOP2AP11388 1531 aaKnown RBP23.55■■□□□ 1.36
MTHFD1-208ENST00000554739 NESP48681 1621 aa23.52■■□□□ 1.36
MTHFD1-208ENST00000554739 CADPSQ9ULU8 1353 aa23.44■■□□□ 1.34
MTHFD1-208ENST00000554739 LAMC3Q9Y6N6 1575 aa23.41■■□□□ 1.34
MTHFD1-208ENST00000554739 ERCC6Q03468 1493 aa23.38■■□□□ 1.33
MTHFD1-208ENST00000554739 CCDC88BA6NC98 1476 aa23.34■■□□□ 1.33
MTHFD1-208ENST00000554739 SUPT5HO00267 1087 aaKnown RBP23.32■■□□□ 1.32
MTHFD1-208ENST00000554739 PDS5BQ9NTI5 1447 aa23.32■■□□□ 1.32
MTHFD1-208ENST00000554739 CFTRP13569 1480 aa23.29■■□□□ 1.32
MTHFD1-208ENST00000554739 FANCD2Q9BXW9 1451 aa23.13■■□□□ 1.29
MTHFD1-208ENST00000554739 KIF21AQ7Z4S6 1674 aa23.13■■□□□ 1.29
MTHFD1-208ENST00000554739 CUX2O14529 1486 aa23.12■■□□□ 1.29
MTHFD1-208ENST00000554739 THOC2Q8NI27 1593 aaKnown RBP23.07■■□□□ 1.28
MTHFD1-208ENST00000554739 CEP164Q9UPV0 1460 aa23.07■■□□□ 1.28
MTHFD1-208ENST00000554739 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
MTHFD1-208ENST00000554739 WDR62O43379 1518 aa22.95■■□□□ 1.26
MTHFD1-208ENST00000554739 URB2Q14146 1524 aaKnown RBP22.9■■□□□ 1.26
MTHFD1-208ENST00000554739 PRDM2Q13029 1718 aa22.9■■□□□ 1.26
MTHFD1-208ENST00000554739 ABCC8Q09428 1581 aa22.76■■□□□ 1.23
MTHFD1-208ENST00000554739 TOPBP1Q92547 1522 aa22.75■■□□□ 1.23
MTHFD1-208ENST00000554739 DNMBPQ6XZF7 1577 aa22.7■■□□□ 1.22
MTHFD1-208ENST00000554739 IFT140Q96RY7 1462 aa22.61■■□□□ 1.21
MTHFD1-208ENST00000554739 CUX1P39880 1505 aa22.6■■□□□ 1.21
MTHFD1-208ENST00000554739 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
MTHFD1-208ENST00000554739 ZNF608Q9ULD9 1512 aaPredicted RBP22.52■■□□□ 1.2
MTHFD1-208ENST00000554739 SOGA1O94964 1423 aa22.52■■□□□ 1.2
MTHFD1-208ENST00000554739 FGD5Q6ZNL6 1462 aa22.51■■□□□ 1.19
MTHFD1-208ENST00000554739 RAD54L2Q9Y4B4 1467 aa22.5■■□□□ 1.19
MTHFD1-208ENST00000554739 DNAJC5Q9H3Z4 198 aa22.5■■□□□ 1.19
MTHFD1-208ENST00000554739 TARBP1Q13395 1621 aaKnown RBP22.49■■□□□ 1.19
MTHFD1-208ENST00000554739 WRNQ14191 1432 aaPredicted RBP eCLIP22.48■■□□□ 1.19
MTHFD1-208ENST00000554739 AQRO60306 1485 aaKnown RBP eCLIP22.42■■□□□ 1.18
MTHFD1-208ENST00000554739 TDRD9Q8NDG6 1382 aaKnown RBP22.4■■□□□ 1.18
MTHFD1-208ENST00000554739 SYNJ1O43426 1573 aa22.38■■□□□ 1.17
MTHFD1-208ENST00000554739 TOP2BQ02880 1626 aa22.38■■□□□ 1.17
MTHFD1-208ENST00000554739 EIF4G3O43432 1585 aaKnown RBP22.34■■□□□ 1.17
MTHFD1-208ENST00000554739 BIVM-ERCC5R4GMW8 1640 aa22.34■■□□□ 1.17
MTHFD1-208ENST00000554739 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
MTHFD1-208ENST00000554739 OSCARQ8IYS5 282 aa22.27■■□□□ 1.16
MTHFD1-208ENST00000554739 WDR97A6NE52 1622 aa22.26■■□□□ 1.15
MTHFD1-208ENST00000554739 GAPVD1Q14C86 1478 aa22.23■■□□□ 1.15
MTHFD1-208ENST00000554739 GRIN2BQ13224 1484 aa22.22■■□□□ 1.15
MTHFD1-208ENST00000554739 SNAPC4Q5SXM2 1469 aa22.16■■□□□ 1.14
MTHFD1-208ENST00000554739 FBLN2P98095 1184 aa22.16■■□□□ 1.14
MTHFD1-208ENST00000554739 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
MTHFD1-208ENST00000554739 MAGI1Q96QZ7 1491 aaPredicted RBP22.13■■□□□ 1.13
MTHFD1-208ENST00000554739 CHMP7Q8WUX9 453 aaPredicted RBP22.11■■□□□ 1.13
MTHFD1-208ENST00000554739 SYNJ2O15056 1496 aa22.07■■□□□ 1.12
MTHFD1-208ENST00000554739 PBRM1Q86U86 1689 aa22.04■■□□□ 1.12
MTHFD1-208ENST00000554739 TRIM41Q8WV44 630 aa22.04■■□□□ 1.12
MTHFD1-208ENST00000554739 KIF27Q86VH2 1401 aa22.02■■□□□ 1.12
MTHFD1-208ENST00000554739 ERICH3Q5RHP9 1530 aa22.01■■□□□ 1.11
MTHFD1-208ENST00000554739 CHD1O14646 1710 aa22.01■■□□□ 1.11
MTHFD1-208ENST00000554739 IGF1RP08069 1367 aa21.99■■□□□ 1.11
MTHFD1-208ENST00000554739 FHAD1B1AJZ9 1412 aa21.98■■□□□ 1.11
MTHFD1-208ENST00000554739 ADAMTS12P58397 1594 aa21.94■■□□□ 1.1
MTHFD1-208ENST00000554739 GRIN2AQ12879 1464 aa21.92■■□□□ 1.1
MTHFD1-208ENST00000554739 CLASP1Q7Z460 1538 aa21.86■■□□□ 1.09
MTHFD1-208ENST00000554739 RUSC2Q8N2Y8 1516 aa21.85■■□□□ 1.09
MTHFD1-208ENST00000554739 NUP160Q12769 1436 aa21.84■■□□□ 1.09
MTHFD1-208ENST00000554739 CARMIL1Q5VZK9 1371 aa21.82■■□□□ 1.08
MTHFD1-208ENST00000554739 ARHGEF11O15085 1522 aa21.81■■□□□ 1.08
MTHFD1-208ENST00000554739 CHIC1Q5VXU3 224 aa21.81■■□□□ 1.08
MTHFD1-208ENST00000554739 CEP170Q5SW79 1584 aa21.78■■□□□ 1.08
MTHFD1-208ENST00000554739 RIMBP3CA6NJZ7 1639 aa21.77■■□□□ 1.08
MTHFD1-208ENST00000554739 RIMBP3BA6NNM3 1639 aa21.77■■□□□ 1.08
MTHFD1-208ENST00000554739 RIMBP3Q9UFD9 1639 aa21.77■■□□□ 1.08
MTHFD1-208ENST00000554739 CUL7Q14999 1698 aa21.75■■□□□ 1.07
MTHFD1-208ENST00000554739 CYB5RLQ6IPT4 315 aa21.71■■□□□ 1.07
MTHFD1-208ENST00000554739 JPH4Q96JJ6 628 aa21.68■■□□□ 1.06
MTHFD1-208ENST00000554739 KIAA0586Q9BVV6 1533 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms