RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 NISCHQ9Y2I1 1504 aa26.71■■□□□ 1.87
SHMT2-215ENST00000554656 CCDC180Q9P1Z9 1646 aa24.01■■□□□ 1.43
SHMT2-215ENST00000554656 ABCC9O60706 1549 aa23.94■■□□□ 1.42
SHMT2-215ENST00000554656 RB1CC1Q8TDY2 1594 aa22.79■■□□□ 1.24
SHMT2-215ENST00000554656 NACADO15069 1562 aa22.63■■□□□ 1.21
SHMT2-215ENST00000554656 DNAJC5BQ9UF47 199 aa22.44■■□□□ 1.18
SHMT2-215ENST00000554656 UNC13AQ9UPW8 1703 aa22.41■■□□□ 1.18
SHMT2-215ENST00000554656 DCAF8L2P0C7V8 631 aa22.38■■□□□ 1.17
SHMT2-215ENST00000554656 MYO15BQ96JP2 1530 aa22.33■■□□□ 1.17
SHMT2-215ENST00000554656 PABPN1Q86U42 306 aaKnown RBP eCLIP22.23■■□□□ 1.15
SHMT2-215ENST00000554656 BICRAQ9NZM4 1560 aa22.21■■□□□ 1.15
SHMT2-215ENST00000554656 ZCCHC6Q5VYS8 1495 aaKnown RBP22.17■■□□□ 1.14
SHMT2-215ENST00000554656 DCAF1Q9Y4B6 1507 aa22.06■■□□□ 1.12
SHMT2-215ENST00000554656 SCRIBQ14160 1630 aa21.87■■□□□ 1.09
SHMT2-215ENST00000554656 SHROOM4Q9ULL8 1493 aa21.82■■□□□ 1.08
SHMT2-215ENST00000554656 CC2D2AQ9P2K1 1620 aa21.66■■□□□ 1.06
SHMT2-215ENST00000554656 EIF4G1Q04637 1599 aaKnown RBP21.61■■□□□ 1.05
SHMT2-215ENST00000554656 CECR2Q9BXF3 1484 aa21.54■■□□□ 1.04
SHMT2-215ENST00000554656 NCAPD3P42695 1498 aa20.88■□□□□ 0.93
SHMT2-215ENST00000554656 SMARCA4P51532 1647 aa20.86■□□□□ 0.93
SHMT2-215ENST00000554656 ATAD2BQ9ULI0 1458 aa20.84■□□□□ 0.93
SHMT2-215ENST00000554656 SMARCA2P51531 1590 aa20.77■□□□□ 0.92
SHMT2-215ENST00000554656 HMGXB3Q12766 1538 aa20.77■□□□□ 0.92
SHMT2-215ENST00000554656 BAZ1AQ9NRL2 1556 aaPredicted RBP20.72■□□□□ 0.91
SHMT2-215ENST00000554656 PEG3Q9GZU2 1588 aa20.66■□□□□ 0.9
SHMT2-215ENST00000554656 BAZ1BQ9UIG0 1483 aaKnown RBP20.62■□□□□ 0.89
SHMT2-215ENST00000554656 MROH2BQ7Z745 1585 aa20.61■□□□□ 0.89
SHMT2-215ENST00000554656 ERCC6Q03468 1493 aa20.61■□□□□ 0.89
SHMT2-215ENST00000554656 NESP48681 1621 aa20.6■□□□□ 0.89
SHMT2-215ENST00000554656 CUX2O14529 1486 aa20.6■□□□□ 0.89
SHMT2-215ENST00000554656 DNAJC5Q9H3Z4 198 aa20.52■□□□□ 0.88
SHMT2-215ENST00000554656 THOC2Q8NI27 1593 aaKnown RBP20.43■□□□□ 0.86
SHMT2-215ENST00000554656 LAMC3Q9Y6N6 1575 aa20.42■□□□□ 0.86
SHMT2-215ENST00000554656 WIZO95785 1651 aa20.38■□□□□ 0.85
SHMT2-215ENST00000554656 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
SHMT2-215ENST00000554656 PDS5BQ9NTI5 1447 aa20.24■□□□□ 0.83
SHMT2-215ENST00000554656 CADPSQ9ULU8 1353 aa20.22■□□□□ 0.83
SHMT2-215ENST00000554656 RSF1Q96T23 1441 aaPredicted RBP20.15■□□□□ 0.82
SHMT2-215ENST00000554656 MRC2Q9UBG0 1479 aa20.12■□□□□ 0.81
SHMT2-215ENST00000554656 WDR62O43379 1518 aa20.11■□□□□ 0.81
SHMT2-215ENST00000554656 TOP2AP11388 1531 aaKnown RBP20.1■□□□□ 0.81
SHMT2-215ENST00000554656 CEP164Q9UPV0 1460 aa20.05■□□□□ 0.8
SHMT2-215ENST00000554656 CFTRP13569 1480 aa20.03■□□□□ 0.8
SHMT2-215ENST00000554656 FANCD2Q9BXW9 1451 aa20.03■□□□□ 0.8
SHMT2-215ENST00000554656 PRDM2Q13029 1718 aa19.94■□□□□ 0.78
SHMT2-215ENST00000554656 URB2Q14146 1524 aaKnown RBP19.91■□□□□ 0.78
SHMT2-215ENST00000554656 CCDC88BA6NC98 1476 aa19.85■□□□□ 0.77
SHMT2-215ENST00000554656 TOPBP1Q92547 1522 aa19.67■□□□□ 0.74
SHMT2-215ENST00000554656 ZNF608Q9ULD9 1512 aaPredicted RBP19.65■□□□□ 0.74
SHMT2-215ENST00000554656 IFT140Q96RY7 1462 aa19.62■□□□□ 0.73
SHMT2-215ENST00000554656 TRIM41Q8WV44 630 aa19.61■□□□□ 0.73
SHMT2-215ENST00000554656 DNMBPQ6XZF7 1577 aa19.61■□□□□ 0.73
SHMT2-215ENST00000554656 OSCARQ8IYS5 282 aa19.57■□□□□ 0.72
SHMT2-215ENST00000554656 EIF4G3O43432 1585 aaKnown RBP19.57■□□□□ 0.72
SHMT2-215ENST00000554656 ABCC8Q09428 1581 aa19.55■□□□□ 0.72
SHMT2-215ENST00000554656 TARBP1Q13395 1621 aaKnown RBP19.54■□□□□ 0.72
SHMT2-215ENST00000554656 POLA1P09884 1462 aaPredicted RBP19.48■□□□□ 0.71
SHMT2-215ENST00000554656 RIMBP3CA6NJZ7 1639 aa19.47■□□□□ 0.71
SHMT2-215ENST00000554656 RIMBP3BA6NNM3 1639 aa19.47■□□□□ 0.71
SHMT2-215ENST00000554656 RIMBP3Q9UFD9 1639 aa19.47■□□□□ 0.71
SHMT2-215ENST00000554656 CHD1O14646 1710 aa19.45■□□□□ 0.7
SHMT2-215ENST00000554656 AQRO60306 1485 aaKnown RBP eCLIP19.43■□□□□ 0.73e-7■■■■□ 25.7
SHMT2-215ENST00000554656 RAD54L2Q9Y4B4 1467 aa19.4■□□□□ 0.7
SHMT2-215ENST00000554656 ARHGEF11O15085 1522 aa19.38■□□□□ 0.69
SHMT2-215ENST00000554656 CUX1P39880 1505 aa19.37■□□□□ 0.69
SHMT2-215ENST00000554656 FGD5Q6ZNL6 1462 aa19.35■□□□□ 0.69
SHMT2-215ENST00000554656 SOGA1O94964 1423 aa19.33■□□□□ 0.68
SHMT2-215ENST00000554656 WDR97A6NE52 1622 aa19.3■□□□□ 0.68
SHMT2-215ENST00000554656 TDRD9Q8NDG6 1382 aaKnown RBP19.3■□□□□ 0.68
SHMT2-215ENST00000554656 SNAPC4Q5SXM2 1469 aa19.26■□□□□ 0.67
SHMT2-215ENST00000554656 ARAP1Q96P48 1450 aa19.22■□□□□ 0.67
SHMT2-215ENST00000554656 FBLN2P98095 1184 aa19.2■□□□□ 0.66
SHMT2-215ENST00000554656 PBRM1Q86U86 1689 aa19.2■□□□□ 0.66
SHMT2-215ENST00000554656 CLASP1Q7Z460 1538 aa19.2■□□□□ 0.66
SHMT2-215ENST00000554656 SUPT5HO00267 1087 aaKnown RBP19.19■□□□□ 0.66
SHMT2-215ENST00000554656 MAGI1Q96QZ7 1491 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-215ENST00000554656 GRIN2BQ13224 1484 aa19.17■□□□□ 0.66
SHMT2-215ENST00000554656 ABCA5Q8WWZ7 1642 aa19.15■□□□□ 0.66
SHMT2-215ENST00000554656 CYB5RLQ6IPT4 315 aa19.13■□□□□ 0.65
SHMT2-215ENST00000554656 ABCA10Q8WWZ4 1543 aa19.13■□□□□ 0.65
SHMT2-215ENST00000554656 SYNJ1O43426 1573 aa19.12■□□□□ 0.65
SHMT2-215ENST00000554656 SYNJ2O15056 1496 aa19.11■□□□□ 0.65
SHMT2-215ENST00000554656 GAPVD1Q14C86 1478 aa19.11■□□□□ 0.65
SHMT2-215ENST00000554656 BIVM-ERCC5R4GMW8 1640 aa19.08■□□□□ 0.65
SHMT2-215ENST00000554656 CHMP7Q8WUX9 453 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-215ENST00000554656 TOP2BQ02880 1626 aa19.05■□□□□ 0.64
SHMT2-215ENST00000554656 ADAMTS12P58397 1594 aa19■□□□□ 0.63
SHMT2-215ENST00000554656 WRNQ14191 1432 aaPredicted RBP eCLIP19■□□□□ 0.63
SHMT2-215ENST00000554656 GRIN2AQ12879 1464 aa18.96■□□□□ 0.63
SHMT2-215ENST00000554656 CEP170Q5SW79 1584 aa18.93■□□□□ 0.62
SHMT2-215ENST00000554656 ERCC6L2Q5T890 1561 aa18.92■□□□□ 0.62
SHMT2-215ENST00000554656 NUP160Q12769 1436 aa18.9■□□□□ 0.62
SHMT2-215ENST00000554656 ERICH3Q5RHP9 1530 aa18.88■□□□□ 0.61
SHMT2-215ENST00000554656 TRHP20396 242 aaPredicted RBP18.87■□□□□ 0.61
SHMT2-215ENST00000554656 SHROOM2Q13796 1616 aa18.86■□□□□ 0.61
SHMT2-215ENST00000554656 FHAD1B1AJZ9 1412 aa18.86■□□□□ 0.61
SHMT2-215ENST00000554656 RUSC2Q8N2Y8 1516 aa18.74■□□□□ 0.59
SHMT2-215ENST00000554656 PRG4Q92954 1404 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-215ENST00000554656 CUL7Q14999 1698 aa18.63■□□□□ 0.57
SHMT2-215ENST00000554656 JPH4Q96JJ6 628 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms