RNA–Protein interactions for RNA: ENST00000554365.1

SPTLC2-202, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 2

Gene SPTLC2, Length 604 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-202ENST00000554365 NISCHQ9Y2I1 1504 aa34.91■■■■□ 3.18
SPTLC2-202ENST00000554365 ABCC9O60706 1549 aa31.59■■■□□ 2.65
SPTLC2-202ENST00000554365 CCDC180Q9P1Z9 1646 aa31.37■■■□□ 2.61
SPTLC2-202ENST00000554365 RB1CC1Q8TDY2 1594 aa29.97■■■□□ 2.39
SPTLC2-202ENST00000554365 DNAJC5BQ9UF47 199 aa29.76■■■□□ 2.35
SPTLC2-202ENST00000554365 NACADO15069 1562 aa29.7■■■□□ 2.35
SPTLC2-202ENST00000554365 DCAF8L2P0C7V8 631 aa29.64■■■□□ 2.34
SPTLC2-202ENST00000554365 PABPN1Q86U42 306 aaKnown RBP eCLIP29.41■■■□□ 2.3
SPTLC2-202ENST00000554365 UNC13AQ9UPW8 1703 aa29.26■■■□□ 2.27
SPTLC2-202ENST00000554365 MYO15BQ96JP2 1530 aa29.2■■■□□ 2.27
SPTLC2-202ENST00000554365 BICRAQ9NZM4 1560 aa29.09■■■□□ 2.25
SPTLC2-202ENST00000554365 ZCCHC6Q5VYS8 1495 aaKnown RBP28.9■■■□□ 2.22
SPTLC2-202ENST00000554365 DCAF1Q9Y4B6 1507 aa28.79■■■□□ 2.2
SPTLC2-202ENST00000554365 SHROOM4Q9ULL8 1493 aa28.65■■■□□ 2.18
SPTLC2-202ENST00000554365 SCRIBQ14160 1630 aa28.64■■■□□ 2.18
SPTLC2-202ENST00000554365 CC2D2AQ9P2K1 1620 aa28.5■■■□□ 2.15
SPTLC2-202ENST00000554365 CECR2Q9BXF3 1484 aa28.46■■■□□ 2.15
SPTLC2-202ENST00000554365 EIF4G1Q04637 1599 aaKnown RBP28.4■■■□□ 2.14
SPTLC2-202ENST00000554365 DNAJC5Q9H3Z4 198 aa27.43■■□□□ 1.98
SPTLC2-202ENST00000554365 NCAPD3P42695 1498 aa27.43■■□□□ 1.98
SPTLC2-202ENST00000554365 ATAD2BQ9ULI0 1458 aa27.33■■□□□ 1.97
SPTLC2-202ENST00000554365 ERCC6Q03468 1493 aa27.31■■□□□ 1.96
SPTLC2-202ENST00000554365 SMARCA4P51532 1647 aa27.27■■□□□ 1.96
SPTLC2-202ENST00000554365 CUX2O14529 1486 aa27.25■■□□□ 1.95
SPTLC2-202ENST00000554365 SMARCA2P51531 1590 aa27.25■■□□□ 1.95
SPTLC2-202ENST00000554365 HMGXB3Q12766 1538 aa27.21■■□□□ 1.95
SPTLC2-202ENST00000554365 BAZ1AQ9NRL2 1556 aaPredicted RBP27.11■■□□□ 1.93
SPTLC2-202ENST00000554365 NESP48681 1621 aa27.09■■□□□ 1.93
SPTLC2-202ENST00000554365 BAZ1BQ9UIG0 1483 aaKnown RBP27.08■■□□□ 1.93
SPTLC2-202ENST00000554365 PEG3Q9GZU2 1588 aa26.97■■□□□ 1.91
SPTLC2-202ENST00000554365 MROH2BQ7Z745 1585 aa26.92■■□□□ 1.9
SPTLC2-202ENST00000554365 LAMC3Q9Y6N6 1575 aa26.84■■□□□ 1.89
SPTLC2-202ENST00000554365 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
SPTLC2-202ENST00000554365 KIF21AQ7Z4S6 1674 aa26.72■■□□□ 1.87
SPTLC2-202ENST00000554365 PDS5BQ9NTI5 1447 aa26.71■■□□□ 1.87
SPTLC2-202ENST00000554365 CADPSQ9ULU8 1353 aa26.6■■□□□ 1.85
SPTLC2-202ENST00000554365 WIZO95785 1651 aa26.59■■□□□ 1.85
SPTLC2-202ENST00000554365 MRC2Q9UBG0 1479 aa26.49■■□□□ 1.83
SPTLC2-202ENST00000554365 WDR62O43379 1518 aa26.41■■□□□ 1.82
SPTLC2-202ENST00000554365 CEP164Q9UPV0 1460 aa26.36■■□□□ 1.81
SPTLC2-202ENST00000554365 FANCD2Q9BXW9 1451 aa26.32■■□□□ 1.8
SPTLC2-202ENST00000554365 RSF1Q96T23 1441 aaPredicted RBP26.3■■□□□ 1.8
SPTLC2-202ENST00000554365 CFTRP13569 1480 aa26.26■■□□□ 1.79
SPTLC2-202ENST00000554365 TRIM41Q8WV44 630 aa26.24■■□□□ 1.79
SPTLC2-202ENST00000554365 TOP2AP11388 1531 aaKnown RBP26.23■■□□□ 1.79
SPTLC2-202ENST00000554365 URB2Q14146 1524 aaKnown RBP26.1■■□□□ 1.77
SPTLC2-202ENST00000554365 OSCARQ8IYS5 282 aa26.02■■□□□ 1.76
SPTLC2-202ENST00000554365 PRDM2Q13029 1718 aa25.96■■□□□ 1.75
SPTLC2-202ENST00000554365 CCDC88BA6NC98 1476 aa25.94■■□□□ 1.74
SPTLC2-202ENST00000554365 IFT140Q96RY7 1462 aa25.83■■□□□ 1.73
SPTLC2-202ENST00000554365 ZNF608Q9ULD9 1512 aaPredicted RBP25.82■■□□□ 1.72
SPTLC2-202ENST00000554365 TOPBP1Q92547 1522 aa25.79■■□□□ 1.72
SPTLC2-202ENST00000554365 ABCC8Q09428 1581 aa25.71■■□□□ 1.71
SPTLC2-202ENST00000554365 RIMBP3CA6NJZ7 1639 aa25.68■■□□□ 1.7
SPTLC2-202ENST00000554365 RIMBP3BA6NNM3 1639 aa25.68■■□□□ 1.7
SPTLC2-202ENST00000554365 RIMBP3Q9UFD9 1639 aa25.68■■□□□ 1.7
SPTLC2-202ENST00000554365 DNMBPQ6XZF7 1577 aa25.68■■□□□ 1.7
SPTLC2-202ENST00000554365 EIF4G3O43432 1585 aaKnown RBP25.66■■□□□ 1.7
SPTLC2-202ENST00000554365 ARHGEF11O15085 1522 aa25.58■■□□□ 1.69
SPTLC2-202ENST00000554365 AQRO60306 1485 aaKnown RBP eCLIP25.57■■□□□ 1.68
SPTLC2-202ENST00000554365 TARBP1Q13395 1621 aaKnown RBP25.55■■□□□ 1.68
SPTLC2-202ENST00000554365 POLA1P09884 1462 aaPredicted RBP25.53■■□□□ 1.68
SPTLC2-202ENST00000554365 CHD1O14646 1710 aa25.49■■□□□ 1.67
SPTLC2-202ENST00000554365 FBLN2P98095 1184 aa25.49■■□□□ 1.67
SPTLC2-202ENST00000554365 CYB5RLQ6IPT4 315 aa25.45■■□□□ 1.66
SPTLC2-202ENST00000554365 RAD54L2Q9Y4B4 1467 aa25.45■■□□□ 1.66
SPTLC2-202ENST00000554365 SOGA1O94964 1423 aa25.42■■□□□ 1.66
SPTLC2-202ENST00000554365 TDRD9Q8NDG6 1382 aaKnown RBP25.41■■□□□ 1.66
SPTLC2-202ENST00000554365 FGD5Q6ZNL6 1462 aa25.35■■□□□ 1.65
SPTLC2-202ENST00000554365 ARAP1Q96P48 1450 aa25.33■■□□□ 1.65
SPTLC2-202ENST00000554365 SNAPC4Q5SXM2 1469 aa25.31■■□□□ 1.64
SPTLC2-202ENST00000554365 CUX1P39880 1505 aa25.29■■□□□ 1.64
SPTLC2-202ENST00000554365 WDR97A6NE52 1622 aa25.26■■□□□ 1.63
SPTLC2-202ENST00000554365 TRHP20396 242 aaPredicted RBP25.25■■□□□ 1.63
SPTLC2-202ENST00000554365 CHMP7Q8WUX9 453 aaPredicted RBP25.25■■□□□ 1.63
SPTLC2-202ENST00000554365 GRIN2BQ13224 1484 aa25.21■■□□□ 1.63
SPTLC2-202ENST00000554365 MAGI1Q96QZ7 1491 aaPredicted RBP25.21■■□□□ 1.63
SPTLC2-202ENST00000554365 CLASP1Q7Z460 1538 aa25.19■■□□□ 1.62
SPTLC2-202ENST00000554365 SYNJ1O43426 1573 aa25.18■■□□□ 1.62
SPTLC2-202ENST00000554365 SYNJ2O15056 1496 aa25.14■■□□□ 1.61
SPTLC2-202ENST00000554365 SUPT5HO00267 1087 aaKnown RBP25.1■■□□□ 1.61
SPTLC2-202ENST00000554365 GAPVD1Q14C86 1478 aa25.09■■□□□ 1.61
SPTLC2-202ENST00000554365 PBRM1Q86U86 1689 aa25.09■■□□□ 1.61
SPTLC2-202ENST00000554365 ABCA10Q8WWZ4 1543 aa25.02■■□□□ 1.6
SPTLC2-202ENST00000554365 ABCA5Q8WWZ7 1642 aa25.01■■□□□ 1.59
SPTLC2-202ENST00000554365 WRNQ14191 1432 aaPredicted RBP eCLIP24.93■■□□□ 1.58
SPTLC2-202ENST00000554365 GRIN2AQ12879 1464 aa24.88■■□□□ 1.57
SPTLC2-202ENST00000554365 ADAMTS12P58397 1594 aa24.84■■□□□ 1.57
SPTLC2-202ENST00000554365 TOP2BQ02880 1626 aa24.83■■□□□ 1.57
SPTLC2-202ENST00000554365 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.57
SPTLC2-202ENST00000554365 ERCC6L2Q5T890 1561 aa24.81■■□□□ 1.56
SPTLC2-202ENST00000554365 CEP170Q5SW79 1584 aa24.8■■□□□ 1.56
SPTLC2-202ENST00000554365 NUP160Q12769 1436 aa24.78■■□□□ 1.56
SPTLC2-202ENST00000554365 FHAD1B1AJZ9 1412 aa24.77■■□□□ 1.56
SPTLC2-202ENST00000554365 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
SPTLC2-202ENST00000554365 SHROOM2Q13796 1616 aa24.68■■□□□ 1.54
SPTLC2-202ENST00000554365 AEBP2Q6ZN18 517 aaPredicted RBP24.63■■□□□ 1.53
SPTLC2-202ENST00000554365 PRG4Q92954 1404 aaPredicted RBP24.6■■□□□ 1.53
SPTLC2-202ENST00000554365 JPH4Q96JJ6 628 aa24.56■■□□□ 1.52
SPTLC2-202ENST00000554365 RUSC2Q8N2Y8 1516 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms