RNA–Protein interactions for RNA: ENST00000553807.1

XRCC3-205, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 2

Gene XRCC3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-205ENST00000553807 NISCHQ9Y2I1 1504 aa49.85■■■■■ 5.57
XRCC3-205ENST00000553807 CCDC180Q9P1Z9 1646 aa44.4■■■■■ 4.7
XRCC3-205ENST00000553807 ABCC9O60706 1549 aa43.63■■■■■ 4.58
XRCC3-205ENST00000553807 RB1CC1Q8TDY2 1594 aa41.87■■■■■ 4.29
XRCC3-205ENST00000553807 NACADO15069 1562 aa41.76■■■■■ 4.27
XRCC3-205ENST00000553807 DCAF8L2P0C7V8 631 aa41.75■■■■■ 4.27
XRCC3-205ENST00000553807 ZCCHC6Q5VYS8 1495 aaKnown RBP41.52■■■■■ 4.24
XRCC3-205ENST00000553807 MYO15BQ96JP2 1530 aa41.4■■■■■ 4.22
XRCC3-205ENST00000553807 DCAF1Q9Y4B6 1507 aa41.19■■■■■ 4.18
XRCC3-205ENST00000553807 UNC13AQ9UPW8 1703 aa40.93■■■■■ 4.14
XRCC3-205ENST00000553807 PABPN1Q86U42 306 aaKnown RBP eCLIP40.73■■■■■ 4.11
XRCC3-205ENST00000553807 BICRAQ9NZM4 1560 aa40.6■■■■■ 4.09
XRCC3-205ENST00000553807 SCRIBQ14160 1630 aa40.59■■■■■ 4.09
XRCC3-205ENST00000553807 SHROOM4Q9ULL8 1493 aa40.13■■■■■ 4.01
XRCC3-205ENST00000553807 DNAJC5BQ9UF47 199 aa40.1■■■■■ 4.01
XRCC3-205ENST00000553807 EIF4G1Q04637 1599 aaKnown RBP39.56■■■■□ 3.92
XRCC3-205ENST00000553807 CC2D2AQ9P2K1 1620 aa39.44■■■■□ 3.9
XRCC3-205ENST00000553807 CECR2Q9BXF3 1484 aa39.2■■■■□ 3.87
XRCC3-205ENST00000553807 SMARCA4P51532 1647 aa38.74■■■■□ 3.79
XRCC3-205ENST00000553807 BAZ1AQ9NRL2 1556 aaPredicted RBP38.66■■■■□ 3.78
XRCC3-205ENST00000553807 ATAD2BQ9ULI0 1458 aa38.54■■■■□ 3.76
XRCC3-205ENST00000553807 SMARCA2P51531 1590 aa38.5■■■■□ 3.75
XRCC3-205ENST00000553807 NCAPD3P42695 1498 aa38.5■■■■□ 3.75
XRCC3-205ENST00000553807 MROH2BQ7Z745 1585 aa38.44■■■■□ 3.74
XRCC3-205ENST00000553807 HMGXB3Q12766 1538 aa38.35■■■■□ 3.73
XRCC3-205ENST00000553807 PEG3Q9GZU2 1588 aa38.31■■■■□ 3.72
XRCC3-205ENST00000553807 BAZ1BQ9UIG0 1483 aaKnown RBP38.26■■■■□ 3.72
XRCC3-205ENST00000553807 WIZO95785 1651 aa38.04■■■■□ 3.68
XRCC3-205ENST00000553807 RSF1Q96T23 1441 aaPredicted RBP37.92■■■■□ 3.66
XRCC3-205ENST00000553807 NESP48681 1621 aa37.71■■■■□ 3.63
XRCC3-205ENST00000553807 ERCC6Q03468 1493 aa37.64■■■■□ 3.62
XRCC3-205ENST00000553807 TOP2AP11388 1531 aaKnown RBP37.62■■■■□ 3.61
XRCC3-205ENST00000553807 LAMC3Q9Y6N6 1575 aa37.55■■■■□ 3.6
XRCC3-205ENST00000553807 CADPSQ9ULU8 1353 aa37.39■■■■□ 3.58
XRCC3-205ENST00000553807 PDS5BQ9NTI5 1447 aa37.29■■■■□ 3.56
XRCC3-205ENST00000553807 KIF21AQ7Z4S6 1674 aa37.28■■■■□ 3.56
XRCC3-205ENST00000553807 CUX2O14529 1486 aa37.22■■■■□ 3.55
XRCC3-205ENST00000553807 THOC2Q8NI27 1593 aaKnown RBP37.17■■■■□ 3.54
XRCC3-205ENST00000553807 CCDC88BA6NC98 1476 aa37.15■■■■□ 3.54
XRCC3-205ENST00000553807 CFTRP13569 1480 aa37.14■■■■□ 3.54
XRCC3-205ENST00000553807 FANCD2Q9BXW9 1451 aa37.01■■■■□ 3.51
XRCC3-205ENST00000553807 CEP164Q9UPV0 1460 aa37■■■■□ 3.51
XRCC3-205ENST00000553807 MRC2Q9UBG0 1479 aa36.96■■■■□ 3.51
XRCC3-205ENST00000553807 SUPT5HO00267 1087 aaKnown RBP36.9■■■■□ 3.5
XRCC3-205ENST00000553807 PRDM2Q13029 1718 aa36.9■■■■□ 3.5
XRCC3-205ENST00000553807 WDR62O43379 1518 aa36.84■■■■□ 3.49
XRCC3-205ENST00000553807 URB2Q14146 1524 aaKnown RBP36.65■■■■□ 3.46
XRCC3-205ENST00000553807 TOPBP1Q92547 1522 aa36.4■■■■□ 3.42
XRCC3-205ENST00000553807 DNMBPQ6XZF7 1577 aa36.36■■■■□ 3.41
XRCC3-205ENST00000553807 ABCC8Q09428 1581 aa36.33■■■■□ 3.41
XRCC3-205ENST00000553807 DNAJC5Q9H3Z4 198 aa36.2■■■■□ 3.39
XRCC3-205ENST00000553807 IFT140Q96RY7 1462 aa36.19■■■■□ 3.38
XRCC3-205ENST00000553807 CUX1P39880 1505 aa36.08■■■■□ 3.37
XRCC3-205ENST00000553807 POLA1P09884 1462 aaPredicted RBP36.08■■■■□ 3.37
XRCC3-205ENST00000553807 ZNF608Q9ULD9 1512 aaPredicted RBP36.08■■■■□ 3.37
XRCC3-205ENST00000553807 TARBP1Q13395 1621 aaKnown RBP36.01■■■■□ 3.35
XRCC3-205ENST00000553807 FGD5Q6ZNL6 1462 aa35.99■■■■□ 3.35
XRCC3-205ENST00000553807 EIF4G3O43432 1585 aaKnown RBP35.96■■■■□ 3.35
XRCC3-205ENST00000553807 RAD54L2Q9Y4B4 1467 aa35.94■■■■□ 3.34
XRCC3-205ENST00000553807 SOGA1O94964 1423 aa35.91■■■■□ 3.34
XRCC3-205ENST00000553807 AQRO60306 1485 aaKnown RBP eCLIP35.84■■■■□ 3.336e-6■■■■□ 25.1
XRCC3-205ENST00000553807 WRNQ14191 1432 aaPredicted RBP eCLIP35.78■■■■□ 3.32
XRCC3-205ENST00000553807 TDRD9Q8NDG6 1382 aaKnown RBP35.75■■■■□ 3.31
XRCC3-205ENST00000553807 SYNJ1O43426 1573 aa35.74■■■■□ 3.31
XRCC3-205ENST00000553807 BIVM-ERCC5R4GMW8 1640 aa35.72■■■■□ 3.31
XRCC3-205ENST00000553807 TOP2BQ02880 1626 aa35.72■■■■□ 3.31
XRCC3-205ENST00000553807 WDR97A6NE52 1622 aa35.7■■■■□ 3.31
XRCC3-205ENST00000553807 OSCARQ8IYS5 282 aa35.62■■■■□ 3.29
XRCC3-205ENST00000553807 ABCA10Q8WWZ4 1543 aa35.6■■■■□ 3.29
XRCC3-205ENST00000553807 SNAPC4Q5SXM2 1469 aa35.54■■■■□ 3.28
XRCC3-205ENST00000553807 CHD1O14646 1710 aa35.53■■■■□ 3.28
XRCC3-205ENST00000553807 GRIN2BQ13224 1484 aa35.52■■■■□ 3.28
XRCC3-205ENST00000553807 GAPVD1Q14C86 1478 aa35.51■■■■□ 3.28
XRCC3-205ENST00000553807 ABCA5Q8WWZ7 1642 aa35.5■■■■□ 3.27
XRCC3-205ENST00000553807 PBRM1Q86U86 1689 aa35.49■■■■□ 3.27
XRCC3-205ENST00000553807 FBLN2P98095 1184 aa35.46■■■■□ 3.27
XRCC3-205ENST00000553807 MAGI1Q96QZ7 1491 aaPredicted RBP35.44■■■■□ 3.26
XRCC3-205ENST00000553807 SYNJ2O15056 1496 aa35.31■■■■□ 3.24
XRCC3-205ENST00000553807 CHMP7Q8WUX9 453 aaPredicted RBP35.3■■■■□ 3.24
XRCC3-205ENST00000553807 ADAMTS12P58397 1594 aa35.21■■■■□ 3.23
XRCC3-205ENST00000553807 ERICH3Q5RHP9 1530 aa35.17■■■■□ 3.22
XRCC3-205ENST00000553807 RIMBP3CA6NJZ7 1639 aa35.15■■■■□ 3.22
XRCC3-205ENST00000553807 RIMBP3BA6NNM3 1639 aa35.15■■■■□ 3.22
XRCC3-205ENST00000553807 RIMBP3Q9UFD9 1639 aa35.15■■■■□ 3.22
XRCC3-205ENST00000553807 ARHGEF11O15085 1522 aa35.11■■■■□ 3.21
XRCC3-205ENST00000553807 CLASP1Q7Z460 1538 aa35.11■■■■□ 3.21
XRCC3-205ENST00000553807 FHAD1B1AJZ9 1412 aa35.08■■■■□ 3.21
XRCC3-205ENST00000553807 TRIM41Q8WV44 630 aa35.08■■■■□ 3.21
XRCC3-205ENST00000553807 GRIN2AQ12879 1464 aa35.08■■■■□ 3.21
XRCC3-205ENST00000553807 KIF27Q86VH2 1401 aa35.04■■■■□ 3.2
XRCC3-205ENST00000553807 CEP170Q5SW79 1584 aa34.92■■■■□ 3.18
XRCC3-205ENST00000553807 NUP160Q12769 1436 aa34.9■■■■□ 3.18
XRCC3-205ENST00000553807 IGF1RP08069 1367 aa34.87■■■■□ 3.17
XRCC3-205ENST00000553807 CUL7Q14999 1698 aa34.86■■■■□ 3.17
XRCC3-205ENST00000553807 ARAP1Q96P48 1450 aa34.84■■■■□ 3.17
XRCC3-205ENST00000553807 CYB5RLQ6IPT4 315 aa34.77■■■■□ 3.16
XRCC3-205ENST00000553807 CARMIL1Q5VZK9 1371 aa34.69■■■■□ 3.14
XRCC3-205ENST00000553807 RUSC2Q8N2Y8 1516 aa34.69■■■■□ 3.14
XRCC3-205ENST00000553807 SHROOM2Q13796 1616 aa34.66■■■■□ 3.14
XRCC3-205ENST00000553807 ERCC6L2Q5T890 1561 aa34.64■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms