RNA–Protein interactions for RNA: ENST00000553659.1

ACTN1-209, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 434 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-209ENST00000553659 NISCHQ9Y2I1 1504 aa39.52■■■■□ 3.92
ACTN1-209ENST00000553659 ABCC9O60706 1549 aa35.6■■■■□ 3.29
ACTN1-209ENST00000553659 CCDC180Q9P1Z9 1646 aa35.54■■■■□ 3.28
ACTN1-209ENST00000553659 RB1CC1Q8TDY2 1594 aa33.88■■■■□ 3.01
ACTN1-209ENST00000553659 NACADO15069 1562 aa33.63■■■□□ 2.97
ACTN1-209ENST00000553659 DNAJC5BQ9UF47 199 aa33.53■■■□□ 2.96
ACTN1-209ENST00000553659 DCAF8L2P0C7V8 631 aa33.41■■■□□ 2.94
ACTN1-209ENST00000553659 UNC13AQ9UPW8 1703 aa33.16■■■□□ 2.9
ACTN1-209ENST00000553659 PABPN1Q86U42 306 aaKnown RBP eCLIP33.13■■■□□ 2.89
ACTN1-209ENST00000553659 MYO15BQ96JP2 1530 aa33.12■■■□□ 2.89
ACTN1-209ENST00000553659 BICRAQ9NZM4 1560 aa32.88■■■□□ 2.85
ACTN1-209ENST00000553659 ZCCHC6Q5VYS8 1495 aaKnown RBP32.7■■■□□ 2.83
ACTN1-209ENST00000553659 DCAF1Q9Y4B6 1507 aa32.65■■■□□ 2.82
ACTN1-209ENST00000553659 SHROOM4Q9ULL8 1493 aa32.42■■■□□ 2.78
ACTN1-209ENST00000553659 SCRIBQ14160 1630 aa32.33■■■□□ 2.77
ACTN1-209ENST00000553659 CC2D2AQ9P2K1 1620 aa32.19■■■□□ 2.74
ACTN1-209ENST00000553659 CECR2Q9BXF3 1484 aa32.1■■■□□ 2.73
ACTN1-209ENST00000553659 EIF4G1Q04637 1599 aaKnown RBP32.07■■■□□ 2.72
ACTN1-209ENST00000553659 NCAPD3P42695 1498 aa31.03■■■□□ 2.56
ACTN1-209ENST00000553659 ATAD2BQ9ULI0 1458 aa30.9■■■□□ 2.54
ACTN1-209ENST00000553659 DNAJC5Q9H3Z4 198 aa30.9■■■□□ 2.54
ACTN1-209ENST00000553659 SMARCA4P51532 1647 aa30.85■■■□□ 2.53
ACTN1-209ENST00000553659 SMARCA2P51531 1590 aa30.83■■■□□ 2.53
ACTN1-209ENST00000553659 HMGXB3Q12766 1538 aa30.78■■■□□ 2.52
ACTN1-209ENST00000553659 CUX2O14529 1486 aa30.76■■■□□ 2.51
ACTN1-209ENST00000553659 ERCC6Q03468 1493 aa30.75■■■□□ 2.51
ACTN1-209ENST00000553659 BAZ1AQ9NRL2 1556 aaPredicted RBP30.68■■■□□ 2.5
ACTN1-209ENST00000553659 BAZ1BQ9UIG0 1483 aaKnown RBP30.59■■■□□ 2.49
ACTN1-209ENST00000553659 PEG3Q9GZU2 1588 aa30.56■■■□□ 2.48
ACTN1-209ENST00000553659 NESP48681 1621 aa30.55■■■□□ 2.48
ACTN1-209ENST00000553659 MROH2BQ7Z745 1585 aa30.44■■■□□ 2.46
ACTN1-209ENST00000553659 LAMC3Q9Y6N6 1575 aa30.36■■■□□ 2.45
ACTN1-209ENST00000553659 THOC2Q8NI27 1593 aaKnown RBP30.28■■■□□ 2.44
ACTN1-209ENST00000553659 KIF21AQ7Z4S6 1674 aa30.2■■■□□ 2.42
ACTN1-209ENST00000553659 PDS5BQ9NTI5 1447 aa30.18■■■□□ 2.42
ACTN1-209ENST00000553659 WIZO95785 1651 aa30.09■■■□□ 2.41
ACTN1-209ENST00000553659 CADPSQ9ULU8 1353 aa30.08■■■□□ 2.41
ACTN1-209ENST00000553659 MRC2Q9UBG0 1479 aa29.9■■■□□ 2.38
ACTN1-209ENST00000553659 WDR62O43379 1518 aa29.84■■■□□ 2.37
ACTN1-209ENST00000553659 RSF1Q96T23 1441 aaPredicted RBP29.77■■■□□ 2.36
ACTN1-209ENST00000553659 CEP164Q9UPV0 1460 aa29.76■■■□□ 2.35
ACTN1-209ENST00000553659 FANCD2Q9BXW9 1451 aa29.72■■■□□ 2.35
ACTN1-209ENST00000553659 CFTRP13569 1480 aa29.71■■■□□ 2.35
ACTN1-209ENST00000553659 TOP2AP11388 1531 aaKnown RBP29.68■■■□□ 2.34
ACTN1-209ENST00000553659 URB2Q14146 1524 aaKnown RBP29.49■■■□□ 2.31
ACTN1-209ENST00000553659 PRDM2Q13029 1718 aa29.47■■■□□ 2.31
ACTN1-209ENST00000553659 TRIM41Q8WV44 630 aa29.45■■■□□ 2.31
ACTN1-209ENST00000553659 OSCARQ8IYS5 282 aa29.36■■■□□ 2.29
ACTN1-209ENST00000553659 CCDC88BA6NC98 1476 aa29.36■■■□□ 2.29
ACTN1-209ENST00000553659 IFT140Q96RY7 1462 aa29.18■■■□□ 2.26
ACTN1-209ENST00000553659 TOPBP1Q92547 1522 aa29.15■■■□□ 2.26
ACTN1-209ENST00000553659 ZNF608Q9ULD9 1512 aaPredicted RBP29.14■■■□□ 2.25
ACTN1-209ENST00000553659 ABCC8Q09428 1581 aa29.12■■■□□ 2.25
ACTN1-209ENST00000553659 DNMBPQ6XZF7 1577 aa29.04■■■□□ 2.24
ACTN1-209ENST00000553659 RIMBP3CA6NJZ7 1639 aa28.98■■■□□ 2.23
ACTN1-209ENST00000553659 RIMBP3BA6NNM3 1639 aa28.98■■■□□ 2.23
ACTN1-209ENST00000553659 RIMBP3Q9UFD9 1639 aa28.98■■■□□ 2.23
ACTN1-209ENST00000553659 EIF4G3O43432 1585 aaKnown RBP28.97■■■□□ 2.23
ACTN1-209ENST00000553659 TARBP1Q13395 1621 aaKnown RBP28.91■■■□□ 2.22
ACTN1-209ENST00000553659 AQRO60306 1485 aaKnown RBP eCLIP28.86■■■□□ 2.21
ACTN1-209ENST00000553659 ARHGEF11O15085 1522 aa28.85■■■□□ 2.21
ACTN1-209ENST00000553659 POLA1P09884 1462 aaPredicted RBP28.84■■■□□ 2.21
ACTN1-209ENST00000553659 CHD1O14646 1710 aa28.83■■■□□ 2.21
ACTN1-209ENST00000553659 RAD54L2Q9Y4B4 1467 aa28.73■■■□□ 2.19
ACTN1-209ENST00000553659 SOGA1O94964 1423 aa28.73■■■□□ 2.19
ACTN1-209ENST00000553659 FBLN2P98095 1184 aa28.71■■■□□ 2.19
ACTN1-209ENST00000553659 TDRD9Q8NDG6 1382 aaKnown RBP28.67■■■□□ 2.18
ACTN1-209ENST00000553659 CYB5RLQ6IPT4 315 aa28.67■■■□□ 2.18
ACTN1-209ENST00000553659 FGD5Q6ZNL6 1462 aa28.64■■■□□ 2.17
ACTN1-209ENST00000553659 WDR97A6NE52 1622 aa28.63■■■□□ 2.17
ACTN1-209ENST00000553659 CUX1P39880 1505 aa28.6■■■□□ 2.17
ACTN1-209ENST00000553659 SNAPC4Q5SXM2 1469 aa28.55■■■□□ 2.16
ACTN1-209ENST00000553659 ARAP1Q96P48 1450 aa28.55■■■□□ 2.16
ACTN1-209ENST00000553659 MAGI1Q96QZ7 1491 aaPredicted RBP28.5■■■□□ 2.15
ACTN1-209ENST00000553659 CHMP7Q8WUX9 453 aaPredicted RBP28.49■■■□□ 2.15
ACTN1-209ENST00000553659 GRIN2BQ13224 1484 aa28.48■■■□□ 2.15
ACTN1-209ENST00000553659 CLASP1Q7Z460 1538 aa28.45■■■□□ 2.15
ACTN1-209ENST00000553659 SYNJ1O43426 1573 aa28.44■■■□□ 2.14
ACTN1-209ENST00000553659 SYNJ2O15056 1496 aa28.4■■■□□ 2.14
ACTN1-209ENST00000553659 PBRM1Q86U86 1689 aa28.39■■■□□ 2.14
ACTN1-209ENST00000553659 TRHP20396 242 aaPredicted RBP28.38■■■□□ 2.13
ACTN1-209ENST00000553659 GAPVD1Q14C86 1478 aa28.37■■■□□ 2.13
ACTN1-209ENST00000553659 SUPT5HO00267 1087 aaKnown RBP28.36■■■□□ 2.13
ACTN1-209ENST00000553659 ABCA10Q8WWZ4 1543 aa28.33■■■□□ 2.13
ACTN1-209ENST00000553659 ABCA5Q8WWZ7 1642 aa28.29■■■□□ 2.12
ACTN1-209ENST00000553659 WRNQ14191 1432 aaPredicted RBP eCLIP28.18■■■□□ 2.1
ACTN1-209ENST00000553659 BIVM-ERCC5R4GMW8 1640 aa28.14■■■□□ 2.1
ACTN1-209ENST00000553659 TOP2BQ02880 1626 aa28.13■■■□□ 2.09
ACTN1-209ENST00000553659 GRIN2AQ12879 1464 aa28.11■■■□□ 2.09
ACTN1-209ENST00000553659 ADAMTS12P58397 1594 aa28.07■■■□□ 2.08
ACTN1-209ENST00000553659 NUP160Q12769 1436 aa28.02■■■□□ 2.08
ACTN1-209ENST00000553659 CEP170Q5SW79 1584 aa28.02■■■□□ 2.08
ACTN1-209ENST00000553659 FHAD1B1AJZ9 1412 aa28.01■■■□□ 2.07
ACTN1-209ENST00000553659 ERCC6L2Q5T890 1561 aa27.99■■■□□ 2.07
ACTN1-209ENST00000553659 ERICH3Q5RHP9 1530 aa27.97■■■□□ 2.07
ACTN1-209ENST00000553659 SHROOM2Q13796 1616 aa27.93■■■□□ 2.06
ACTN1-209ENST00000553659 JPH4Q96JJ6 628 aa27.77■■■□□ 2.04
ACTN1-209ENST00000553659 PRG4Q92954 1404 aaPredicted RBP27.76■■■□□ 2.04
ACTN1-209ENST00000553659 RUSC2Q8N2Y8 1516 aa27.67■■■□□ 2.02
ACTN1-209ENST00000553659 KIF13AQ9H1H9 1805 aa27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms