RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 NISCHQ9Y2I1 1504 aa37.21■■■■□ 3.55
SHMT2-204ENST00000553324 CCDC180Q9P1Z9 1646 aa33.05■■■□□ 2.88
SHMT2-204ENST00000553324 ABCC9O60706 1549 aa32.54■■■□□ 2.8
SHMT2-204ENST00000553324 DCAF8L2P0C7V8 631 aa31.3■■■□□ 2.6
SHMT2-204ENST00000553324 RB1CC1Q8TDY2 1594 aa31.26■■■□□ 2.6
SHMT2-204ENST00000553324 NACADO15069 1562 aa31.22■■■□□ 2.59
SHMT2-204ENST00000553324 MYO15BQ96JP2 1530 aa31.03■■■□□ 2.56
SHMT2-204ENST00000553324 ZCCHC6Q5VYS8 1495 aaKnown RBP30.94■■■□□ 2.54
SHMT2-204ENST00000553324 DCAF1Q9Y4B6 1507 aa30.82■■■□□ 2.52
SHMT2-204ENST00000553324 PABPN1Q86U42 306 aaKnown RBP eCLIP30.47■■■□□ 2.47
SHMT2-204ENST00000553324 UNC13AQ9UPW8 1703 aa30.33■■■□□ 2.45
SHMT2-204ENST00000553324 BICRAQ9NZM4 1560 aa30.23■■■□□ 2.43
SHMT2-204ENST00000553324 SCRIBQ14160 1630 aa30.14■■■□□ 2.41
SHMT2-204ENST00000553324 SHROOM4Q9ULL8 1493 aa30.05■■■□□ 2.4
SHMT2-204ENST00000553324 DNAJC5BQ9UF47 199 aa30.04■■■□□ 2.4
SHMT2-204ENST00000553324 EIF4G1Q04637 1599 aaKnown RBP29.5■■■□□ 2.31
SHMT2-204ENST00000553324 CC2D2AQ9P2K1 1620 aa29.39■■■□□ 2.3
SHMT2-204ENST00000553324 CECR2Q9BXF3 1484 aa29.29■■■□□ 2.28
SHMT2-204ENST00000553324 BAZ1AQ9NRL2 1556 aaPredicted RBP28.86■■■□□ 2.21
SHMT2-204ENST00000553324 NCAPD3P42695 1498 aa28.85■■■□□ 2.21
SHMT2-204ENST00000553324 SMARCA4P51532 1647 aa28.83■■■□□ 2.21
SHMT2-204ENST00000553324 ATAD2BQ9ULI0 1458 aa28.8■■■□□ 2.2
SHMT2-204ENST00000553324 SMARCA2P51531 1590 aa28.76■■■□□ 2.19
SHMT2-204ENST00000553324 MROH2BQ7Z745 1585 aa28.63■■■□□ 2.17
SHMT2-204ENST00000553324 HMGXB3Q12766 1538 aa28.61■■■□□ 2.17
SHMT2-204ENST00000553324 PEG3Q9GZU2 1588 aa28.6■■■□□ 2.17
SHMT2-204ENST00000553324 BAZ1BQ9UIG0 1483 aaKnown RBP28.55■■■□□ 2.16
SHMT2-204ENST00000553324 RSF1Q96T23 1441 aaPredicted RBP28.33■■■□□ 2.13
SHMT2-204ENST00000553324 WIZO95785 1651 aa28.26■■■□□ 2.12
SHMT2-204ENST00000553324 ERCC6Q03468 1493 aa28.12■■■□□ 2.09
SHMT2-204ENST00000553324 NESP48681 1621 aa28.08■■■□□ 2.09
SHMT2-204ENST00000553324 LAMC3Q9Y6N6 1575 aa28.05■■■□□ 2.08
SHMT2-204ENST00000553324 CADPSQ9ULU8 1353 aa28.03■■■□□ 2.08
SHMT2-204ENST00000553324 TOP2AP11388 1531 aaKnown RBP28.02■■■□□ 2.08
SHMT2-204ENST00000553324 PDS5BQ9NTI5 1447 aa27.98■■■□□ 2.07
SHMT2-204ENST00000553324 CUX2O14529 1486 aa27.88■■■□□ 2.05
SHMT2-204ENST00000553324 CFTRP13569 1480 aa27.79■■■□□ 2.04
SHMT2-204ENST00000553324 CCDC88BA6NC98 1476 aa27.74■■■□□ 2.03
SHMT2-204ENST00000553324 KIF21AQ7Z4S6 1674 aa27.65■■■□□ 2.02
SHMT2-204ENST00000553324 FANCD2Q9BXW9 1451 aa27.64■■■□□ 2.02
SHMT2-204ENST00000553324 THOC2Q8NI27 1593 aaKnown RBP27.62■■■□□ 2.01
SHMT2-204ENST00000553324 CEP164Q9UPV0 1460 aa27.62■■■□□ 2.01
SHMT2-204ENST00000553324 MRC2Q9UBG0 1479 aa27.6■■■□□ 2.01
SHMT2-204ENST00000553324 SUPT5HO00267 1087 aaKnown RBP27.58■■■□□ 2.01
SHMT2-204ENST00000553324 WDR62O43379 1518 aa27.47■■□□□ 1.99
SHMT2-204ENST00000553324 PRDM2Q13029 1718 aa27.35■■□□□ 1.97
SHMT2-204ENST00000553324 URB2Q14146 1524 aaKnown RBP27.31■■□□□ 1.96
SHMT2-204ENST00000553324 DNAJC5Q9H3Z4 198 aa27.27■■□□□ 1.96
SHMT2-204ENST00000553324 ABCC8Q09428 1581 aa27.26■■□□□ 1.95
SHMT2-204ENST00000553324 TOPBP1Q92547 1522 aa27.16■■□□□ 1.94
SHMT2-204ENST00000553324 DNMBPQ6XZF7 1577 aa27.09■■□□□ 1.93
SHMT2-204ENST00000553324 IFT140Q96RY7 1462 aa27.07■■□□□ 1.92
SHMT2-204ENST00000553324 POLA1P09884 1462 aaPredicted RBP26.92■■□□□ 1.9
SHMT2-204ENST00000553324 SOGA1O94964 1423 aa26.9■■□□□ 1.9
SHMT2-204ENST00000553324 ZNF608Q9ULD9 1512 aaPredicted RBP26.89■■□□□ 1.89
SHMT2-204ENST00000553324 CUX1P39880 1505 aa26.86■■□□□ 1.89
SHMT2-204ENST00000553324 OSCARQ8IYS5 282 aa26.83■■□□□ 1.89
SHMT2-204ENST00000553324 FGD5Q6ZNL6 1462 aa26.82■■□□□ 1.88
SHMT2-204ENST00000553324 TARBP1Q13395 1621 aaKnown RBP26.81■■□□□ 1.88
SHMT2-204ENST00000553324 RAD54L2Q9Y4B4 1467 aa26.8■■□□□ 1.88
SHMT2-204ENST00000553324 AQRO60306 1485 aaKnown RBP eCLIP26.77■■□□□ 1.885e-7■■■■□ 24.5
SHMT2-204ENST00000553324 WRNQ14191 1432 aaPredicted RBP eCLIP26.73■■□□□ 1.87
SHMT2-204ENST00000553324 TDRD9Q8NDG6 1382 aaKnown RBP26.73■■□□□ 1.87
SHMT2-204ENST00000553324 EIF4G3O43432 1585 aaKnown RBP26.71■■□□□ 1.87
SHMT2-204ENST00000553324 WDR97A6NE52 1622 aa26.67■■□□□ 1.86
SHMT2-204ENST00000553324 TOP2BQ02880 1626 aa26.61■■□□□ 1.85
SHMT2-204ENST00000553324 ABCA10Q8WWZ4 1543 aa26.6■■□□□ 1.85
SHMT2-204ENST00000553324 FBLN2P98095 1184 aa26.58■■□□□ 1.85
SHMT2-204ENST00000553324 GRIN2BQ13224 1484 aa26.56■■□□□ 1.84
SHMT2-204ENST00000553324 BIVM-ERCC5R4GMW8 1640 aa26.55■■□□□ 1.84
SHMT2-204ENST00000553324 GAPVD1Q14C86 1478 aa26.55■■□□□ 1.84
SHMT2-204ENST00000553324 SYNJ1O43426 1573 aa26.54■■□□□ 1.84
SHMT2-204ENST00000553324 CHMP7Q8WUX9 453 aaPredicted RBP26.52■■□□□ 1.84
SHMT2-204ENST00000553324 MAGI1Q96QZ7 1491 aaPredicted RBP26.49■■□□□ 1.83
SHMT2-204ENST00000553324 SNAPC4Q5SXM2 1469 aa26.49■■□□□ 1.83
SHMT2-204ENST00000553324 ABCA5Q8WWZ7 1642 aa26.39■■□□□ 1.82
SHMT2-204ENST00000553324 SYNJ2O15056 1496 aa26.39■■□□□ 1.82
SHMT2-204ENST00000553324 CHD1O14646 1710 aa26.34■■□□□ 1.81
SHMT2-204ENST00000553324 PBRM1Q86U86 1689 aa26.31■■□□□ 1.8
SHMT2-204ENST00000553324 ERICH3Q5RHP9 1530 aa26.28■■□□□ 1.8
SHMT2-204ENST00000553324 TRIM41Q8WV44 630 aa26.27■■□□□ 1.8
SHMT2-204ENST00000553324 FHAD1B1AJZ9 1412 aa26.26■■□□□ 1.79
SHMT2-204ENST00000553324 KIF27Q86VH2 1401 aa26.22■■□□□ 1.79
SHMT2-204ENST00000553324 ARHGEF11O15085 1522 aa26.2■■□□□ 1.79
SHMT2-204ENST00000553324 GRIN2AQ12879 1464 aa26.18■■□□□ 1.78
SHMT2-204ENST00000553324 RIMBP3CA6NJZ7 1639 aa26.17■■□□□ 1.78
SHMT2-204ENST00000553324 RIMBP3BA6NNM3 1639 aa26.17■■□□□ 1.78
SHMT2-204ENST00000553324 RIMBP3Q9UFD9 1639 aa26.17■■□□□ 1.78
SHMT2-204ENST00000553324 ADAMTS12P58397 1594 aa26.16■■□□□ 1.78
SHMT2-204ENST00000553324 CLASP1Q7Z460 1538 aa26.15■■□□□ 1.78
SHMT2-204ENST00000553324 IGF1RP08069 1367 aa26.14■■□□□ 1.78
SHMT2-204ENST00000553324 CYB5RLQ6IPT4 315 aa26.11■■□□□ 1.77
SHMT2-204ENST00000553324 NUP160Q12769 1436 aa26.09■■□□□ 1.77
SHMT2-204ENST00000553324 CARMIL1Q5VZK9 1371 aa25.99■■□□□ 1.75
SHMT2-204ENST00000553324 CEP170Q5SW79 1584 aa25.98■■□□□ 1.75
SHMT2-204ENST00000553324 ARAP1Q96P48 1450 aa25.98■■□□□ 1.75
SHMT2-204ENST00000553324 JPH4Q96JJ6 628 aa25.95■■□□□ 1.74
SHMT2-204ENST00000553324 CUL7Q14999 1698 aa25.95■■□□□ 1.74
SHMT2-204ENST00000553324 KIAA0586Q9BVV6 1533 aa25.84■■□□□ 1.73
SHMT2-204ENST00000553324 RUSC2Q8N2Y8 1516 aa25.83■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms