RNA–Protein interactions for RNA: ENST00000553300.5

HNRNPC-205, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HNRNPC, Length 1,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-205ENST00000553300 NISCHQ9Y2I1 1504 aa32.26■■■□□ 2.75
HNRNPC-205ENST00000553300 CCDC180Q9P1Z9 1646 aa28.79■■■□□ 2.2
HNRNPC-205ENST00000553300 ABCC9O60706 1549 aa28.35■■■□□ 2.13
HNRNPC-205ENST00000553300 RB1CC1Q8TDY2 1594 aa27.23■■□□□ 1.95
HNRNPC-205ENST00000553300 NACADO15069 1562 aa27.16■■□□□ 1.94
HNRNPC-205ENST00000553300 DCAF8L2P0C7V8 631 aa27.07■■□□□ 1.92
HNRNPC-205ENST00000553300 MYO15BQ96JP2 1530 aa26.94■■□□□ 1.9
HNRNPC-205ENST00000553300 ZCCHC6Q5VYS8 1495 aaKnown RBP26.8■■□□□ 1.88
HNRNPC-205ENST00000553300 DCAF1Q9Y4B6 1507 aa26.72■■□□□ 1.87
HNRNPC-205ENST00000553300 UNC13AQ9UPW8 1703 aa26.53■■□□□ 1.84
HNRNPC-205ENST00000553300 PABPN1Q86U42 306 aaKnown RBP eCLIP26.46■■□□□ 1.83
HNRNPC-205ENST00000553300 BICRAQ9NZM4 1560 aa26.35■■□□□ 1.81
HNRNPC-205ENST00000553300 DNAJC5BQ9UF47 199 aa26.24■■□□□ 1.79
HNRNPC-205ENST00000553300 SCRIBQ14160 1630 aa26.18■■□□□ 1.78
HNRNPC-205ENST00000553300 SHROOM4Q9ULL8 1493 aa26.16■■□□□ 1.78
HNRNPC-205ENST00000553300 EIF4G1Q04637 1599 aaKnown RBP25.7■■□□□ 1.71
HNRNPC-205ENST00000553300 CC2D2AQ9P2K1 1620 aa25.65■■□□□ 1.7
HNRNPC-205ENST00000553300 CECR2Q9BXF3 1484 aa25.54■■□□□ 1.68
HNRNPC-205ENST00000553300 NCAPD3P42695 1498 aa25.06■■□□□ 1.6
HNRNPC-205ENST00000553300 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
HNRNPC-205ENST00000553300 BAZ1AQ9NRL2 1556 aaPredicted RBP25.03■■□□□ 1.6
HNRNPC-205ENST00000553300 ATAD2BQ9ULI0 1458 aa25.01■■□□□ 1.59
HNRNPC-205ENST00000553300 SMARCA2P51531 1590 aa24.99■■□□□ 1.59
HNRNPC-205ENST00000553300 HMGXB3Q12766 1538 aa24.89■■□□□ 1.58
HNRNPC-205ENST00000553300 PEG3Q9GZU2 1588 aa24.85■■□□□ 1.57
HNRNPC-205ENST00000553300 MROH2BQ7Z745 1585 aa24.81■■□□□ 1.56
HNRNPC-205ENST00000553300 BAZ1BQ9UIG0 1483 aaKnown RBP24.79■■□□□ 1.56
HNRNPC-205ENST00000553300 WIZO95785 1651 aa24.52■■□□□ 1.52
HNRNPC-205ENST00000553300 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
HNRNPC-205ENST00000553300 RSF1Q96T23 1441 aaPredicted RBP24.48■■□□□ 1.51
HNRNPC-205ENST00000553300 NESP48681 1621 aa24.45■■□□□ 1.5
HNRNPC-205ENST00000553300 LAMC3Q9Y6N6 1575 aa24.43■■□□□ 1.5
HNRNPC-205ENST00000553300 CUX2O14529 1486 aa24.36■■□□□ 1.49
HNRNPC-205ENST00000553300 CADPSQ9ULU8 1353 aa24.32■■□□□ 1.48
HNRNPC-205ENST00000553300 PDS5BQ9NTI5 1447 aa24.3■■□□□ 1.48
HNRNPC-205ENST00000553300 TOP2AP11388 1531 aaKnown RBP24.29■■□□□ 1.48
HNRNPC-205ENST00000553300 KIF21AQ7Z4S6 1674 aa24.15■■□□□ 1.46
HNRNPC-205ENST00000553300 THOC2Q8NI27 1593 aaKnown RBP24.14■■□□□ 1.46
HNRNPC-205ENST00000553300 CFTRP13569 1480 aa24.11■■□□□ 1.45
HNRNPC-205ENST00000553300 MRC2Q9UBG0 1479 aa24.01■■□□□ 1.43
HNRNPC-205ENST00000553300 FANCD2Q9BXW9 1451 aa24.01■■□□□ 1.43
HNRNPC-205ENST00000553300 CEP164Q9UPV0 1460 aa24.01■■□□□ 1.43
HNRNPC-205ENST00000553300 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
HNRNPC-205ENST00000553300 WDR62O43379 1518 aa23.94■■□□□ 1.42
HNRNPC-205ENST00000553300 DNAJC5Q9H3Z4 198 aa23.91■■□□□ 1.42
HNRNPC-205ENST00000553300 PRDM2Q13029 1718 aa23.88■■□□□ 1.41
HNRNPC-205ENST00000553300 URB2Q14146 1524 aaKnown RBP23.75■■□□□ 1.39
HNRNPC-205ENST00000553300 SUPT5HO00267 1087 aaKnown RBP23.67■■□□□ 1.38
HNRNPC-205ENST00000553300 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
HNRNPC-205ENST00000553300 TOPBP1Q92547 1522 aa23.58■■□□□ 1.37
HNRNPC-205ENST00000553300 DNMBPQ6XZF7 1577 aa23.54■■□□□ 1.36
HNRNPC-205ENST00000553300 IFT140Q96RY7 1462 aa23.53■■□□□ 1.36
HNRNPC-205ENST00000553300 ZNF608Q9ULD9 1512 aaPredicted RBP23.37■■□□□ 1.33
HNRNPC-205ENST00000553300 POLA1P09884 1462 aaPredicted RBP23.37■■□□□ 1.33
HNRNPC-205ENST00000553300 OSCARQ8IYS5 282 aa23.34■■□□□ 1.33
HNRNPC-205ENST00000553300 TARBP1Q13395 1621 aaKnown RBP23.33■■□□□ 1.33
HNRNPC-205ENST00000553300 SOGA1O94964 1423 aa23.31■■□□□ 1.32
HNRNPC-205ENST00000553300 CUX1P39880 1505 aa23.29■■□□□ 1.32
HNRNPC-205ENST00000553300 EIF4G3O43432 1585 aaKnown RBP23.28■■□□□ 1.32
HNRNPC-205ENST00000553300 FGD5Q6ZNL6 1462 aa23.27■■□□□ 1.32
HNRNPC-205ENST00000553300 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.312e-7■■■■□ 24.5
HNRNPC-205ENST00000553300 RAD54L2Q9Y4B4 1467 aa23.24■■□□□ 1.31
HNRNPC-205ENST00000553300 WDR97A6NE52 1622 aa23.21■■□□□ 1.31
HNRNPC-205ENST00000553300 TDRD9Q8NDG6 1382 aaKnown RBP23.17■■□□□ 1.3
HNRNPC-205ENST00000553300 WRNQ14191 1432 aaPredicted RBP eCLIP23.1■■□□□ 1.29
HNRNPC-205ENST00000553300 ABCA10Q8WWZ4 1543 aa23.06■■□□□ 1.28
HNRNPC-205ENST00000553300 TOP2BQ02880 1626 aa23.06■■□□□ 1.28
HNRNPC-205ENST00000553300 GRIN2BQ13224 1484 aa23.06■■□□□ 1.28
HNRNPC-205ENST00000553300 FBLN2P98095 1184 aa23.05■■□□□ 1.28
HNRNPC-205ENST00000553300 BIVM-ERCC5R4GMW8 1640 aa23.04■■□□□ 1.28
HNRNPC-205ENST00000553300 CHD1O14646 1710 aa23.03■■□□□ 1.28
HNRNPC-205ENST00000553300 MAGI1Q96QZ7 1491 aaPredicted RBP23.03■■□□□ 1.28
HNRNPC-205ENST00000553300 GAPVD1Q14C86 1478 aa23.02■■□□□ 1.28
HNRNPC-205ENST00000553300 SNAPC4Q5SXM2 1469 aa23.01■■□□□ 1.27
HNRNPC-205ENST00000553300 SYNJ1O43426 1573 aa22.99■■□□□ 1.27
HNRNPC-205ENST00000553300 CHMP7Q8WUX9 453 aaPredicted RBP22.98■■□□□ 1.27
HNRNPC-205ENST00000553300 TRIM41Q8WV44 630 aa22.96■■□□□ 1.27
HNRNPC-205ENST00000553300 ABCA5Q8WWZ7 1642 aa22.95■■□□□ 1.27
HNRNPC-205ENST00000553300 PBRM1Q86U86 1689 aa22.93■■□□□ 1.26
HNRNPC-205ENST00000553300 SYNJ2O15056 1496 aa22.93■■□□□ 1.26
HNRNPC-205ENST00000553300 RIMBP3CA6NJZ7 1639 aa22.89■■□□□ 1.25
HNRNPC-205ENST00000553300 RIMBP3BA6NNM3 1639 aa22.89■■□□□ 1.25
HNRNPC-205ENST00000553300 RIMBP3Q9UFD9 1639 aa22.89■■□□□ 1.25
HNRNPC-205ENST00000553300 ARHGEF11O15085 1522 aa22.89■■□□□ 1.25
HNRNPC-205ENST00000553300 ERICH3Q5RHP9 1530 aa22.79■■□□□ 1.24
HNRNPC-205ENST00000553300 CLASP1Q7Z460 1538 aa22.79■■□□□ 1.24
HNRNPC-205ENST00000553300 FHAD1B1AJZ9 1412 aa22.76■■□□□ 1.23
HNRNPC-205ENST00000553300 ADAMTS12P58397 1594 aa22.74■■□□□ 1.23
HNRNPC-205ENST00000553300 GRIN2AQ12879 1464 aa22.74■■□□□ 1.23
HNRNPC-205ENST00000553300 CYB5RLQ6IPT4 315 aa22.73■■□□□ 1.23
HNRNPC-205ENST00000553300 ARAP1Q96P48 1450 aa22.67■■□□□ 1.22
HNRNPC-205ENST00000553300 NUP160Q12769 1436 aa22.66■■□□□ 1.22
HNRNPC-205ENST00000553300 KIF27Q86VH2 1401 aa22.66■■□□□ 1.22
HNRNPC-205ENST00000553300 CEP170Q5SW79 1584 aa22.59■■□□□ 1.21
HNRNPC-205ENST00000553300 IGF1RP08069 1367 aa22.59■■□□□ 1.21
HNRNPC-205ENST00000553300 CUL7Q14999 1698 aa22.53■■□□□ 1.2
HNRNPC-205ENST00000553300 SHROOM2Q13796 1616 aa22.5■■□□□ 1.19
HNRNPC-205ENST00000553300 JPH4Q96JJ6 628 aa22.46■■□□□ 1.19
HNRNPC-205ENST00000553300 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
HNRNPC-205ENST00000553300 RUSC2Q8N2Y8 1516 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms