RNA–Protein interactions for RNA: ENST00000553237.5

CDK4-215, Transcript of cyclin dependent kinase 4, humanhuman

TSL 2

Gene CDK4, Length 952 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-215ENST00000553237 NISCHQ9Y2I1 1504 aa39.19■■■■□ 3.86
CDK4-215ENST00000553237 CCDC180Q9P1Z9 1646 aa34.92■■■■□ 3.18
CDK4-215ENST00000553237 ABCC9O60706 1549 aa34.77■■■■□ 3.16
CDK4-215ENST00000553237 RB1CC1Q8TDY2 1594 aa33.14■■■□□ 2.9
CDK4-215ENST00000553237 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
CDK4-215ENST00000553237 NACADO15069 1562 aa33■■■□□ 2.87
CDK4-215ENST00000553237 MYO15BQ96JP2 1530 aa32.6■■■□□ 2.81
CDK4-215ENST00000553237 ZCCHC6Q5VYS8 1495 aaKnown RBP32.52■■■□□ 2.8
CDK4-215ENST00000553237 PABPN1Q86U42 306 aaKnown RBP eCLIP32.5■■■□□ 2.79
CDK4-215ENST00000553237 DNAJC5BQ9UF47 199 aa32.38■■■□□ 2.77
CDK4-215ENST00000553237 UNC13AQ9UPW8 1703 aa32.35■■■□□ 2.77
CDK4-215ENST00000553237 DCAF1Q9Y4B6 1507 aa32.31■■■□□ 2.76
CDK4-215ENST00000553237 BICRAQ9NZM4 1560 aa32.18■■■□□ 2.74
CDK4-215ENST00000553237 SCRIBQ14160 1630 aa31.95■■■□□ 2.71
CDK4-215ENST00000553237 SHROOM4Q9ULL8 1493 aa31.7■■■□□ 2.66
CDK4-215ENST00000553237 CC2D2AQ9P2K1 1620 aa31.36■■■□□ 2.61
CDK4-215ENST00000553237 EIF4G1Q04637 1599 aaKnown RBP31.36■■■□□ 2.61
CDK4-215ENST00000553237 CECR2Q9BXF3 1484 aa31.26■■■□□ 2.59
CDK4-215ENST00000553237 NCAPD3P42695 1498 aa30.49■■■□□ 2.47
CDK4-215ENST00000553237 SMARCA4P51532 1647 aa30.47■■■□□ 2.47
CDK4-215ENST00000553237 ATAD2BQ9ULI0 1458 aa30.46■■■□□ 2.47
CDK4-215ENST00000553237 BAZ1AQ9NRL2 1556 aaPredicted RBP30.37■■■□□ 2.45
CDK4-215ENST00000553237 SMARCA2P51531 1590 aa30.35■■■□□ 2.45
CDK4-215ENST00000553237 HMGXB3Q12766 1538 aa30.24■■■□□ 2.43
CDK4-215ENST00000553237 MROH2BQ7Z745 1585 aa30.23■■■□□ 2.43
CDK4-215ENST00000553237 BAZ1BQ9UIG0 1483 aaKnown RBP30.18■■■□□ 2.42
CDK4-215ENST00000553237 PEG3Q9GZU2 1588 aa30.13■■■□□ 2.41
CDK4-215ENST00000553237 ERCC6Q03468 1493 aa29.98■■■□□ 2.39
CDK4-215ENST00000553237 NESP48681 1621 aa29.96■■■□□ 2.39
CDK4-215ENST00000553237 WIZO95785 1651 aa29.87■■■□□ 2.37
CDK4-215ENST00000553237 CUX2O14529 1486 aa29.74■■■□□ 2.35
CDK4-215ENST00000553237 RSF1Q96T23 1441 aaPredicted RBP29.73■■■□□ 2.35
CDK4-215ENST00000553237 LAMC3Q9Y6N6 1575 aa29.71■■■□□ 2.35
CDK4-215ENST00000553237 CADPSQ9ULU8 1353 aa29.62■■■□□ 2.33
CDK4-215ENST00000553237 PDS5BQ9NTI5 1447 aa29.59■■■□□ 2.33
CDK4-215ENST00000553237 KIF21AQ7Z4S6 1674 aa29.5■■■□□ 2.31
CDK4-215ENST00000553237 THOC2Q8NI27 1593 aaKnown RBP29.49■■■□□ 2.31
CDK4-215ENST00000553237 TOP2AP11388 1531 aaKnown RBP29.48■■■□□ 2.31
CDK4-215ENST00000553237 DNAJC5Q9H3Z4 198 aa29.45■■■□□ 2.31
CDK4-215ENST00000553237 CFTRP13569 1480 aa29.31■■■□□ 2.28
CDK4-215ENST00000553237 MRC2Q9UBG0 1479 aa29.29■■■□□ 2.28
CDK4-215ENST00000553237 FANCD2Q9BXW9 1451 aa29.27■■■□□ 2.28
CDK4-215ENST00000553237 CEP164Q9UPV0 1460 aa29.24■■■□□ 2.27
CDK4-215ENST00000553237 CCDC88BA6NC98 1476 aa29.2■■■□□ 2.26
CDK4-215ENST00000553237 WDR62O43379 1518 aa29.18■■■□□ 2.26
CDK4-215ENST00000553237 URB2Q14146 1524 aaKnown RBP28.99■■■□□ 2.23
CDK4-215ENST00000553237 PRDM2Q13029 1718 aa28.93■■■□□ 2.22
CDK4-215ENST00000553237 SUPT5HO00267 1087 aaKnown RBP28.79■■■□□ 2.2
CDK4-215ENST00000553237 TOPBP1Q92547 1522 aa28.74■■■□□ 2.19
CDK4-215ENST00000553237 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
CDK4-215ENST00000553237 IFT140Q96RY7 1462 aa28.65■■■□□ 2.18
CDK4-215ENST00000553237 DNMBPQ6XZF7 1577 aa28.63■■■□□ 2.17
CDK4-215ENST00000553237 ZNF608Q9ULD9 1512 aaPredicted RBP28.62■■■□□ 2.17
CDK4-215ENST00000553237 OSCARQ8IYS5 282 aa28.55■■■□□ 2.16
CDK4-215ENST00000553237 POLA1P09884 1462 aaPredicted RBP28.46■■■□□ 2.15
CDK4-215ENST00000553237 AQRO60306 1485 aaKnown RBP eCLIP28.42■■■□□ 2.149e-10■■■■■ 41.2
CDK4-215ENST00000553237 TARBP1Q13395 1621 aaKnown RBP28.42■■■□□ 2.14
CDK4-215ENST00000553237 RAD54L2Q9Y4B4 1467 aa28.41■■■□□ 2.14
CDK4-215ENST00000553237 EIF4G3O43432 1585 aaKnown RBP28.41■■■□□ 2.14
CDK4-215ENST00000553237 SOGA1O94964 1423 aa28.39■■■□□ 2.14
CDK4-215ENST00000553237 TRIM41Q8WV44 630 aa28.37■■■□□ 2.13
CDK4-215ENST00000553237 CUX1P39880 1505 aa28.37■■■□□ 2.13
CDK4-215ENST00000553237 FGD5Q6ZNL6 1462 aa28.34■■■□□ 2.13
CDK4-215ENST00000553237 TDRD9Q8NDG6 1382 aaKnown RBP28.32■■■□□ 2.12
CDK4-215ENST00000553237 FBLN2P98095 1184 aa28.24■■■□□ 2.11
CDK4-215ENST00000553237 CHD1O14646 1710 aa28.12■■■□□ 2.09
CDK4-215ENST00000553237 SNAPC4Q5SXM2 1469 aa28.1■■■□□ 2.09
CDK4-215ENST00000553237 WDR97A6NE52 1622 aa28.09■■■□□ 2.09
CDK4-215ENST00000553237 GRIN2BQ13224 1484 aa28.07■■■□□ 2.08
CDK4-215ENST00000553237 RIMBP3CA6NJZ7 1639 aa28.06■■■□□ 2.08
CDK4-215ENST00000553237 RIMBP3BA6NNM3 1639 aa28.06■■■□□ 2.08
CDK4-215ENST00000553237 RIMBP3Q9UFD9 1639 aa28.06■■■□□ 2.08
CDK4-215ENST00000553237 CHMP7Q8WUX9 453 aaPredicted RBP28.04■■■□□ 2.08
CDK4-215ENST00000553237 WRNQ14191 1432 aaPredicted RBP eCLIP28.03■■■□□ 2.08
CDK4-215ENST00000553237 GAPVD1Q14C86 1478 aa28.02■■■□□ 2.08
CDK4-215ENST00000553237 ARHGEF11O15085 1522 aa28.02■■■□□ 2.08
CDK4-215ENST00000553237 ABCA10Q8WWZ4 1543 aa28.02■■■□□ 2.08
CDK4-215ENST00000553237 MAGI1Q96QZ7 1491 aaPredicted RBP28■■■□□ 2.07
CDK4-215ENST00000553237 SYNJ1O43426 1573 aa27.97■■■□□ 2.07
CDK4-215ENST00000553237 TOP2BQ02880 1626 aa27.96■■■□□ 2.07
CDK4-215ENST00000553237 BIVM-ERCC5R4GMW8 1640 aa27.94■■■□□ 2.06
CDK4-215ENST00000553237 SYNJ2O15056 1496 aa27.92■■■□□ 2.06
CDK4-215ENST00000553237 PBRM1Q86U86 1689 aa27.91■■■□□ 2.06
CDK4-215ENST00000553237 ABCA5Q8WWZ7 1642 aa27.91■■■□□ 2.06
CDK4-215ENST00000553237 CYB5RLQ6IPT4 315 aa27.9■■■□□ 2.06
CDK4-215ENST00000553237 CLASP1Q7Z460 1538 aa27.82■■■□□ 2.04
CDK4-215ENST00000553237 ARAP1Q96P48 1450 aa27.77■■■□□ 2.04
CDK4-215ENST00000553237 GRIN2AQ12879 1464 aa27.7■■■□□ 2.02
CDK4-215ENST00000553237 ADAMTS12P58397 1594 aa27.69■■■□□ 2.02
CDK4-215ENST00000553237 FHAD1B1AJZ9 1412 aa27.67■■■□□ 2.02
CDK4-215ENST00000553237 ERICH3Q5RHP9 1530 aa27.65■■■□□ 2.02
CDK4-215ENST00000553237 NUP160Q12769 1436 aa27.58■■■□□ 2
CDK4-215ENST00000553237 CEP170Q5SW79 1584 aa27.57■■■□□ 2
CDK4-215ENST00000553237 TRHP20396 242 aaPredicted RBP27.5■■□□□ 1.99
CDK4-215ENST00000553237 KIF27Q86VH2 1401 aa27.49■■□□□ 1.99
CDK4-215ENST00000553237 ERCC6L2Q5T890 1561 aa27.48■■□□□ 1.99
CDK4-215ENST00000553237 IGF1RP08069 1367 aa27.47■■□□□ 1.99
CDK4-215ENST00000553237 JPH4Q96JJ6 628 aa27.39■■□□□ 1.98
CDK4-215ENST00000553237 SHROOM2Q13796 1616 aa27.38■■□□□ 1.97
CDK4-215ENST00000553237 PRG4Q92954 1404 aaPredicted RBP27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 174.8 ms