RNA–Protein interactions for RNA: ENST00000553116.5

RAB5B-210, Transcript of RAB5B, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB5B, Length 3,322 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5B-210ENST00000553116 NISCHQ9Y2I1 1504 aa18.28■□□□□ 0.52
RAB5B-210ENST00000553116 CCDC180Q9P1Z9 1646 aa15.86■□□□□ 0.13
RAB5B-210ENST00000553116 ZCCHC6Q5VYS8 1495 aaKnown RBP15.36■□□□□ 0.05
RAB5B-210ENST00000553116 DCAF8L2P0C7V8 631 aa15.31■□□□□ 0.04
RAB5B-210ENST00000553116 SHROOM4Q9ULL8 1493 aa15.18■□□□□ 0.02
RAB5B-210ENST00000553116 ABCC9O60706 1549 aa15.04■□□□□ -0
RAB5B-210ENST00000553116 DCAF1Q9Y4B6 1507 aa15.03■□□□□ -0
RAB5B-210ENST00000553116 MYO15BQ96JP2 1530 aa14.79□□□□□ -0.04
RAB5B-210ENST00000553116 NACADO15069 1562 aa14.76□□□□□ -0.05
RAB5B-210ENST00000553116 SCRIBQ14160 1630 aa14.72□□□□□ -0.05
RAB5B-210ENST00000553116 SUPT5HO00267 1087 aaKnown RBP14.67□□□□□ -0.06
RAB5B-210ENST00000553116 RB1CC1Q8TDY2 1594 aa14.65□□□□□ -0.06
RAB5B-210ENST00000553116 UNC13AQ9UPW8 1703 aa14.36□□□□□ -0.11
RAB5B-210ENST00000553116 PABPN1Q86U42 306 aaKnown RBP eCLIP14.23□□□□□ -0.13
RAB5B-210ENST00000553116 CECR2Q9BXF3 1484 aa14.23□□□□□ -0.13
RAB5B-210ENST00000553116 RSF1Q96T23 1441 aaPredicted RBP14.23□□□□□ -0.13
RAB5B-210ENST00000553116 BICRAQ9NZM4 1560 aa14.16□□□□□ -0.14
RAB5B-210ENST00000553116 MROH2BQ7Z745 1585 aa14.15□□□□□ -0.14
RAB5B-210ENST00000553116 BAZ1AQ9NRL2 1556 aaPredicted RBP14.12□□□□□ -0.15
RAB5B-210ENST00000553116 WIZO95785 1651 aa14.07□□□□□ -0.16
RAB5B-210ENST00000553116 SMARCA4P51532 1647 aa14.05□□□□□ -0.16
RAB5B-210ENST00000553116 CHIC1Q5VXU3 224 aa13.98□□□□□ -0.17
RAB5B-210ENST00000553116 TOP2AP11388 1531 aaKnown RBP13.89□□□□□ -0.19
RAB5B-210ENST00000553116 SMARCA2P51531 1590 aa13.79□□□□□ -0.2
RAB5B-210ENST00000553116 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
RAB5B-210ENST00000553116 ATAD2BQ9ULI0 1458 aa13.78□□□□□ -0.2
RAB5B-210ENST00000553116 EIF4G1Q04637 1599 aaKnown RBP13.77□□□□□ -0.21
RAB5B-210ENST00000553116 BAZ1BQ9UIG0 1483 aaKnown RBP13.77□□□□□ -0.21
RAB5B-210ENST00000553116 CCDC88BA6NC98 1476 aa13.76□□□□□ -0.21
RAB5B-210ENST00000553116 TRIM41Q8WV44 630 aa13.74□□□□□ -0.21
RAB5B-210ENST00000553116 HMGXB3Q12766 1538 aa13.61□□□□□ -0.23
RAB5B-210ENST00000553116 NCAPD3P42695 1498 aa13.6□□□□□ -0.23
RAB5B-210ENST00000553116 ABCC8Q09428 1581 aa13.57□□□□□ -0.24
RAB5B-210ENST00000553116 FAM9AQ8IZU1 332 aaPredicted RBP13.57□□□□□ -0.24
RAB5B-210ENST00000553116 CC2D2AQ9P2K1 1620 aa13.56□□□□□ -0.24
RAB5B-210ENST00000553116 LOC105371045A0A1W2PR82 267 aa13.51□□□□□ -0.25
RAB5B-210ENST00000553116 EHMT2Q96KQ7 1210 aa13.45□□□□□ -0.26
RAB5B-210ENST00000553116 WRNQ14191 1432 aaPredicted RBP eCLIP13.44□□□□□ -0.26
RAB5B-210ENST00000553116 SYNJ1O43426 1573 aa13.36□□□□□ -0.27
RAB5B-210ENST00000553116 CFTRP13569 1480 aa13.35□□□□□ -0.27
RAB5B-210ENST00000553116 PRDM2Q13029 1718 aa13.32□□□□□ -0.28
RAB5B-210ENST00000553116 CADPSQ9ULU8 1353 aa13.31□□□□□ -0.28
RAB5B-210ENST00000553116 SOGA1O94964 1423 aa13.31□□□□□ -0.28
RAB5B-210ENST00000553116 TOP2BQ02880 1626 aa13.27□□□□□ -0.28
RAB5B-210ENST00000553116 EEA1Q15075 1411 aa13.26□□□□□ -0.29
RAB5B-210ENST00000553116 RUSC2Q8N2Y8 1516 aa13.25□□□□□ -0.29
RAB5B-210ENST00000553116 BIVM-ERCC5R4GMW8 1640 aa13.24□□□□□ -0.29
RAB5B-210ENST00000553116 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
RAB5B-210ENST00000553116 CUX1P39880 1505 aa13.22□□□□□ -0.29
RAB5B-210ENST00000553116 NESP48681 1621 aa13.21□□□□□ -0.3
RAB5B-210ENST00000553116 DNAJC5BQ9UF47 199 aa13.2□□□□□ -0.3
RAB5B-210ENST00000553116 FANCD2Q9BXW9 1451 aa13.2□□□□□ -0.3
RAB5B-210ENST00000553116 UBTFP17480 764 aaKnown RBP13.18□□□□□ -0.3
RAB5B-210ENST00000553116 LAMC3Q9Y6N6 1575 aa13.16□□□□□ -0.3
RAB5B-210ENST00000553116 GOLGA3Q08378 1498 aa13.13□□□□□ -0.31
RAB5B-210ENST00000553116 CEP164Q9UPV0 1460 aa13.12□□□□□ -0.31
RAB5B-210ENST00000553116 KIF27Q86VH2 1401 aa13.1□□□□□ -0.31
RAB5B-210ENST00000553116 PDS5BQ9NTI5 1447 aa13.1□□□□□ -0.31
RAB5B-210ENST00000553116 FGD5Q6ZNL6 1462 aa13.09□□□□□ -0.31
RAB5B-210ENST00000553116 KIF21BO75037 1637 aa13.08□□□□□ -0.31
RAB5B-210ENST00000553116 TNIKQ9UKE5 1360 aa13.07□□□□□ -0.32
RAB5B-210ENST00000553116 DNMBPQ6XZF7 1577 aa13.07□□□□□ -0.32
RAB5B-210ENST00000553116 CEP162Q5TB80 1403 aa13.06□□□□□ -0.32
RAB5B-210ENST00000553116 PCGF6Q9BYE7 350 aa13.06□□□□□ -0.32
RAB5B-210ENST00000553116 CUX2O14529 1486 aa13.06□□□□□ -0.32
RAB5B-210ENST00000553116 TOPBP1Q92547 1522 aa13.05□□□□□ -0.32
RAB5B-210ENST00000553116 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
RAB5B-210ENST00000553116 RAPGEF2Q9Y4G8 1499 aa13.04□□□□□ -0.32
RAB5B-210ENST00000553116 RANGAP1P46060 587 aaPredicted RBP13.02□□□□□ -0.33
RAB5B-210ENST00000553116 URB2Q14146 1524 aaKnown RBP13□□□□□ -0.33
RAB5B-210ENST00000553116 POLA1P09884 1462 aaPredicted RBP13□□□□□ -0.33
RAB5B-210ENST00000553116 RAD54L2Q9Y4B4 1467 aa12.99□□□□□ -0.33
RAB5B-210ENST00000553116 ERICH3Q5RHP9 1530 aa12.97□□□□□ -0.33
RAB5B-210ENST00000553116 PRXQ9BXM0 1461 aa12.97□□□□□ -0.33
RAB5B-210ENST00000553116 PPARGC1BQ86YN6 1023 aaKnown RBP12.96□□□□□ -0.33
RAB5B-210ENST00000553116 TRIM26Q12899 539 aaPredicted RBP12.96□□□□□ -0.34
RAB5B-210ENST00000553116 CLIP1P30622 1438 aa12.95□□□□□ -0.34
RAB5B-210ENST00000553116 ABCA10Q8WWZ4 1543 aa12.93□□□□□ -0.34
RAB5B-210ENST00000553116 IGF1RP08069 1367 aa12.92□□□□□ -0.34
RAB5B-210ENST00000553116 ERCC6Q03468 1493 aa12.92□□□□□ -0.34
RAB5B-210ENST00000553116 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.34
RAB5B-210ENST00000553116 CARMIL1Q5VZK9 1371 aa12.9□□□□□ -0.34
RAB5B-210ENST00000553116 TTBK1Q5TCY1 1321 aaPredicted RBP12.9□□□□□ -0.34
RAB5B-210ENST00000553116 TDRD9Q8NDG6 1382 aaKnown RBP12.87□□□□□ -0.35
RAB5B-210ENST00000553116 WDR97A6NE52 1622 aa12.87□□□□□ -0.35
RAB5B-210ENST00000553116 APLP2Q06481 763 aa12.83□□□□□ -0.35
RAB5B-210ENST00000553116 GAPVD1Q14C86 1478 aa12.83□□□□□ -0.35
RAB5B-210ENST00000553116 CUL7Q14999 1698 aa12.83□□□□□ -0.36
RAB5B-210ENST00000553116 ABCA5Q8WWZ7 1642 aa12.82□□□□□ -0.36
RAB5B-210ENST00000553116 VPS8Q8N3P4 1428 aa12.82□□□□□ -0.36
RAB5B-210ENST00000553116 TARBP1Q13395 1621 aaKnown RBP12.81□□□□□ -0.36
RAB5B-210ENST00000553116 WDR62O43379 1518 aa12.8□□□□□ -0.36
RAB5B-210ENST00000553116 AQRO60306 1485 aaKnown RBP eCLIP12.76□□□□□ -0.377e-8■■■■■ 33.4
RAB5B-210ENST00000553116 PBRM1Q86U86 1689 aa12.76□□□□□ -0.37
RAB5B-210ENST00000553116 ARAP1Q96P48 1450 aa12.75□□□□□ -0.37
RAB5B-210ENST00000553116 IFT140Q96RY7 1462 aa12.75□□□□□ -0.37
RAB5B-210ENST00000553116 THOC2Q8NI27 1593 aaKnown RBP12.75□□□□□ -0.37
RAB5B-210ENST00000553116 ARHGAP35Q9NRY4 1499 aa12.74□□□□□ -0.37
RAB5B-210ENST00000553116 CTTNBP2Q8WZ74 1663 aa12.73□□□□□ -0.37
RAB5B-210ENST00000553116 ZNF608Q9ULD9 1512 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms