RNA–Protein interactions for RNA: ENST00000553043.1

LETMD1-236, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-236ENST00000553043 NISCHQ9Y2I1 1504 aa17.41■□□□□ 0.38
LETMD1-236ENST00000553043 ABCC9O60706 1549 aa16.54■□□□□ 0.24
LETMD1-236ENST00000553043 DNAJC5BQ9UF47 199 aa16.1■□□□□ 0.17
LETMD1-236ENST00000553043 CCDC180Q9P1Z9 1646 aa15.75■□□□□ 0.11
LETMD1-236ENST00000553043 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
LETMD1-236ENST00000553043 RB1CC1Q8TDY2 1594 aa15.36■□□□□ 0.05
LETMD1-236ENST00000553043 DNAJC5Q9H3Z4 198 aa15.19■□□□□ 0.02
LETMD1-236ENST00000553043 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
LETMD1-236ENST00000553043 NACADO15069 1562 aa15.11■□□□□ 0.01
LETMD1-236ENST00000553043 BICRAQ9NZM4 1560 aa14.94□□□□□ -0.02
LETMD1-236ENST00000553043 CECR2Q9BXF3 1484 aa14.94□□□□□ -0.02
LETMD1-236ENST00000553043 UNC13AQ9UPW8 1703 aa14.91□□□□□ -0.02
LETMD1-236ENST00000553043 CC2D2AQ9P2K1 1620 aa14.82□□□□□ -0.04
LETMD1-236ENST00000553043 MYO15BQ96JP2 1530 aa14.67□□□□□ -0.06
LETMD1-236ENST00000553043 EIF4G1Q04637 1599 aaKnown RBP14.64□□□□□ -0.07
LETMD1-236ENST00000553043 SHROOM4Q9ULL8 1493 aa14.63□□□□□ -0.07
LETMD1-236ENST00000553043 SCRIBQ14160 1630 aa14.44□□□□□ -0.1
LETMD1-236ENST00000553043 CUX2O14529 1486 aa14.42□□□□□ -0.1
LETMD1-236ENST00000553043 TRIM41Q8WV44 630 aa14.35□□□□□ -0.11
LETMD1-236ENST00000553043 ERCC6Q03468 1493 aa14.31□□□□□ -0.12
LETMD1-236ENST00000553043 ZCCHC6Q5VYS8 1495 aaKnown RBP14.28□□□□□ -0.12
LETMD1-236ENST00000553043 DCAF1Q9Y4B6 1507 aa14.27□□□□□ -0.12
LETMD1-236ENST00000553043 NESP48681 1621 aa14.02□□□□□ -0.16
LETMD1-236ENST00000553043 NCAPD3P42695 1498 aa14.01□□□□□ -0.17
LETMD1-236ENST00000553043 THOC2Q8NI27 1593 aaKnown RBP13.89□□□□□ -0.19
LETMD1-236ENST00000553043 ATAD2BQ9ULI0 1458 aa13.89□□□□□ -0.19
LETMD1-236ENST00000553043 SMARCA2P51531 1590 aa13.84□□□□□ -0.19
LETMD1-236ENST00000553043 HMGXB3Q12766 1538 aa13.79□□□□□ -0.2
LETMD1-236ENST00000553043 OSCARQ8IYS5 282 aa13.77□□□□□ -0.21
LETMD1-236ENST00000553043 PDS5BQ9NTI5 1447 aa13.75□□□□□ -0.21
LETMD1-236ENST00000553043 LAMC3Q9Y6N6 1575 aa13.73□□□□□ -0.21
LETMD1-236ENST00000553043 BAZ1BQ9UIG0 1483 aaKnown RBP13.73□□□□□ -0.21
LETMD1-236ENST00000553043 KIF21AQ7Z4S6 1674 aa13.7□□□□□ -0.22
LETMD1-236ENST00000553043 SMARCA4P51532 1647 aa13.67□□□□□ -0.22
LETMD1-236ENST00000553043 BAZ1AQ9NRL2 1556 aaPredicted RBP13.66□□□□□ -0.22
LETMD1-236ENST00000553043 MRC2Q9UBG0 1479 aa13.65□□□□□ -0.22
LETMD1-236ENST00000553043 AEBP2Q6ZN18 517 aaPredicted RBP13.63□□□□□ -0.23
LETMD1-236ENST00000553043 WDR62O43379 1518 aa13.59□□□□□ -0.23
LETMD1-236ENST00000553043 CADPSQ9ULU8 1353 aa13.59□□□□□ -0.23
LETMD1-236ENST00000553043 TRHP20396 242 aaPredicted RBP13.59□□□□□ -0.23
LETMD1-236ENST00000553043 RIMBP3CA6NJZ7 1639 aa13.53□□□□□ -0.24
LETMD1-236ENST00000553043 RIMBP3BA6NNM3 1639 aa13.53□□□□□ -0.24
LETMD1-236ENST00000553043 RIMBP3Q9UFD9 1639 aa13.53□□□□□ -0.24
LETMD1-236ENST00000553043 CYB5RLQ6IPT4 315 aa13.53□□□□□ -0.24
LETMD1-236ENST00000553043 PEG3Q9GZU2 1588 aa13.5□□□□□ -0.25
LETMD1-236ENST00000553043 ARHGEF11O15085 1522 aa13.47□□□□□ -0.25
LETMD1-236ENST00000553043 CEP164Q9UPV0 1460 aa13.47□□□□□ -0.25
LETMD1-236ENST00000553043 MROH2BQ7Z745 1585 aa13.43□□□□□ -0.26
LETMD1-236ENST00000553043 FANCD2Q9BXW9 1451 aa13.42□□□□□ -0.26
LETMD1-236ENST00000553043 URB2Q14146 1524 aaKnown RBP13.34□□□□□ -0.27
LETMD1-236ENST00000553043 ARAP1Q96P48 1450 aa13.3□□□□□ -0.28
LETMD1-236ENST00000553043 ZNF608Q9ULD9 1512 aaPredicted RBP13.3□□□□□ -0.28
LETMD1-236ENST00000553043 CFTRP13569 1480 aa13.28□□□□□ -0.28
LETMD1-236ENST00000553043 FBLN2P98095 1184 aa13.25□□□□□ -0.29
LETMD1-236ENST00000553043 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
LETMD1-236ENST00000553043 WIZO95785 1651 aa13.2□□□□□ -0.3
LETMD1-236ENST00000553043 RSF1Q96T23 1441 aaPredicted RBP13.18□□□□□ -0.3
LETMD1-236ENST00000553043 AQRO60306 1485 aaKnown RBP eCLIP13.14□□□□□ -0.311e-6■■□□□ 13.5
LETMD1-236ENST00000553043 ILDR1Q86SU0 546 aaPredicted RBP13.12□□□□□ -0.31
LETMD1-236ENST00000553043 EIF4G3O43432 1585 aaKnown RBP13.11□□□□□ -0.31
LETMD1-236ENST00000553043 CHD1O14646 1710 aa13.09□□□□□ -0.31
LETMD1-236ENST00000553043 TOPBP1Q92547 1522 aa13.08□□□□□ -0.31
LETMD1-236ENST00000553043 CHMP7Q8WUX9 453 aaPredicted RBP13.01□□□□□ -0.33
LETMD1-236ENST00000553043 ABCC8Q09428 1581 aa12.98□□□□□ -0.33
LETMD1-236ENST00000553043 TOP2AP11388 1531 aaKnown RBP12.98□□□□□ -0.33
LETMD1-236ENST00000553043 TDRD9Q8NDG6 1382 aaKnown RBP12.98□□□□□ -0.33
LETMD1-236ENST00000553043 CLASP1Q7Z460 1538 aa12.97□□□□□ -0.33
LETMD1-236ENST00000553043 TARBP1Q13395 1621 aaKnown RBP12.96□□□□□ -0.33
LETMD1-236ENST00000553043 GAPVD1Q14C86 1478 aa12.95□□□□□ -0.34
LETMD1-236ENST00000553043 DNMBPQ6XZF7 1577 aa12.94□□□□□ -0.34
LETMD1-236ENST00000553043 SNAPC4Q5SXM2 1469 aa12.94□□□□□ -0.34
LETMD1-236ENST00000553043 RAD54L2Q9Y4B4 1467 aa12.93□□□□□ -0.34
LETMD1-236ENST00000553043 POLA1P09884 1462 aaPredicted RBP12.92□□□□□ -0.34
LETMD1-236ENST00000553043 SYNJ1O43426 1573 aa12.92□□□□□ -0.34
LETMD1-236ENST00000553043 CCDC88BA6NC98 1476 aa12.91□□□□□ -0.34
LETMD1-236ENST00000553043 PRDM2Q13029 1718 aa12.9□□□□□ -0.34
LETMD1-236ENST00000553043 SOGA1O94964 1423 aa12.89□□□□□ -0.35
LETMD1-236ENST00000553043 KDM4FA0A1W2PPD8 638 aa12.88□□□□□ -0.35
LETMD1-236ENST00000553043 MAGI1Q96QZ7 1491 aaPredicted RBP12.85□□□□□ -0.35
LETMD1-236ENST00000553043 SYNJ2O15056 1496 aa12.83□□□□□ -0.36
LETMD1-236ENST00000553043 GRIN2BQ13224 1484 aa12.81□□□□□ -0.36
LETMD1-236ENST00000553043 ERCC6L2Q5T890 1561 aa12.78□□□□□ -0.36
LETMD1-236ENST00000553043 FAM69CQ0P6D2 419 aa12.77□□□□□ -0.37
LETMD1-236ENST00000553043 FGD5Q6ZNL6 1462 aa12.76□□□□□ -0.37
LETMD1-236ENST00000553043 WDR97A6NE52 1622 aa12.73□□□□□ -0.37
LETMD1-236ENST00000553043 KIF13AQ9H1H9 1805 aa12.69□□□□□ -0.38
LETMD1-236ENST00000553043 CEP170Q5SW79 1584 aa12.68□□□□□ -0.38
LETMD1-236ENST00000553043 NPM1P06748 294 aaKnown RBP eCLIP12.66□□□□□ -0.38
LETMD1-236ENST00000553043 ABCC10Q5T3U5 1492 aa12.65□□□□□ -0.38
LETMD1-236ENST00000553043 GRIN2AQ12879 1464 aa12.64□□□□□ -0.39
LETMD1-236ENST00000553043 CUX1P39880 1505 aa12.63□□□□□ -0.39
LETMD1-236ENST00000553043 KDM6BO15054 1643 aa12.62□□□□□ -0.39
LETMD1-236ENST00000553043 NUP160Q12769 1436 aa12.62□□□□□ -0.39
LETMD1-236ENST00000553043 PBRM1Q86U86 1689 aa12.61□□□□□ -0.39
LETMD1-236ENST00000553043 PRG4Q92954 1404 aaPredicted RBP12.6□□□□□ -0.39
LETMD1-236ENST00000553043 FBXO41Q8TF61 875 aa12.58□□□□□ -0.4
LETMD1-236ENST00000553043 JPH4Q96JJ6 628 aa12.57□□□□□ -0.4
LETMD1-236ENST00000553043 ADGRL1O94910 1474 aa12.57□□□□□ -0.4
LETMD1-236ENST00000553043 HECW2Q9P2P5 1572 aa12.56□□□□□ -0.4
LETMD1-236ENST00000553043 ABCA10Q8WWZ4 1543 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms