RNA–Protein interactions for RNA: ENST00000552742.5

PFDN5-218, Transcript of prefoldin subunit 5, humanhuman

TSL 3

Gene PFDN5, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN5-218ENST00000552742 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
PFDN5-218ENST00000552742 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
PFDN5-218ENST00000552742 ABCC9O60706 1549 aa20.76■□□□□ 0.91
PFDN5-218ENST00000552742 DCAF8L2P0C7V8 631 aa20.03■□□□□ 0.8
PFDN5-218ENST00000552742 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
PFDN5-218ENST00000552742 NACADO15069 1562 aa19.87■□□□□ 0.77
PFDN5-218ENST00000552742 ZCCHC6Q5VYS8 1495 aaKnown RBP19.79■□□□□ 0.76
PFDN5-218ENST00000552742 MYO15BQ96JP2 1530 aa19.71■□□□□ 0.75
PFDN5-218ENST00000552742 DCAF1Q9Y4B6 1507 aa19.64■□□□□ 0.73
PFDN5-218ENST00000552742 UNC13AQ9UPW8 1703 aa19.51■□□□□ 0.71
PFDN5-218ENST00000552742 PABPN1Q86U42 306 aaKnown RBP eCLIP19.46■□□□□ 0.71
PFDN5-218ENST00000552742 BICRAQ9NZM4 1560 aa19.34■□□□□ 0.69
PFDN5-218ENST00000552742 SCRIBQ14160 1630 aa19.33■□□□□ 0.68
PFDN5-218ENST00000552742 DNAJC5BQ9UF47 199 aa19.15■□□□□ 0.66
PFDN5-218ENST00000552742 SHROOM4Q9ULL8 1493 aa19.02■□□□□ 0.63
PFDN5-218ENST00000552742 EIF4G1Q04637 1599 aaKnown RBP18.8■□□□□ 0.6
PFDN5-218ENST00000552742 CC2D2AQ9P2K1 1620 aa18.75■□□□□ 0.59
PFDN5-218ENST00000552742 CECR2Q9BXF3 1484 aa18.63■□□□□ 0.57
PFDN5-218ENST00000552742 SMARCA4P51532 1647 aa18.46■□□□□ 0.55
PFDN5-218ENST00000552742 BAZ1AQ9NRL2 1556 aaPredicted RBP18.42■□□□□ 0.54
PFDN5-218ENST00000552742 ATAD2BQ9ULI0 1458 aa18.38■□□□□ 0.53
PFDN5-218ENST00000552742 MROH2BQ7Z745 1585 aa18.37■□□□□ 0.53
PFDN5-218ENST00000552742 NCAPD3P42695 1498 aa18.36■□□□□ 0.53
PFDN5-218ENST00000552742 SMARCA2P51531 1590 aa18.33■□□□□ 0.52
PFDN5-218ENST00000552742 PEG3Q9GZU2 1588 aa18.25■□□□□ 0.51
PFDN5-218ENST00000552742 HMGXB3Q12766 1538 aa18.23■□□□□ 0.51
PFDN5-218ENST00000552742 BAZ1BQ9UIG0 1483 aaKnown RBP18.21■□□□□ 0.51
PFDN5-218ENST00000552742 WIZO95785 1651 aa18.18■□□□□ 0.5
PFDN5-218ENST00000552742 RSF1Q96T23 1441 aaPredicted RBP18.15■□□□□ 0.5
PFDN5-218ENST00000552742 NESP48681 1621 aa17.98■□□□□ 0.47
PFDN5-218ENST00000552742 TOP2AP11388 1531 aaKnown RBP17.93■□□□□ 0.46
PFDN5-218ENST00000552742 ERCC6Q03468 1493 aa17.86■□□□□ 0.45
PFDN5-218ENST00000552742 LAMC3Q9Y6N6 1575 aa17.85■□□□□ 0.45
PFDN5-218ENST00000552742 CADPSQ9ULU8 1353 aa17.84■□□□□ 0.45
PFDN5-218ENST00000552742 SUPT5HO00267 1087 aaKnown RBP17.79■□□□□ 0.44
PFDN5-218ENST00000552742 CCDC88BA6NC98 1476 aa17.78■□□□□ 0.44
PFDN5-218ENST00000552742 PDS5BQ9NTI5 1447 aa17.76■□□□□ 0.43
PFDN5-218ENST00000552742 KIF21AQ7Z4S6 1674 aa17.74■□□□□ 0.43
PFDN5-218ENST00000552742 CFTRP13569 1480 aa17.71■□□□□ 0.43
PFDN5-218ENST00000552742 CUX2O14529 1486 aa17.63■□□□□ 0.41
PFDN5-218ENST00000552742 FANCD2Q9BXW9 1451 aa17.63■□□□□ 0.41
PFDN5-218ENST00000552742 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
PFDN5-218ENST00000552742 CEP164Q9UPV0 1460 aa17.58■□□□□ 0.41
PFDN5-218ENST00000552742 PRDM2Q13029 1718 aa17.57■□□□□ 0.4
PFDN5-218ENST00000552742 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
PFDN5-218ENST00000552742 WDR62O43379 1518 aa17.48■□□□□ 0.39
PFDN5-218ENST00000552742 URB2Q14146 1524 aaKnown RBP17.47■□□□□ 0.39
PFDN5-218ENST00000552742 TOPBP1Q92547 1522 aa17.35■□□□□ 0.37
PFDN5-218ENST00000552742 ABCC8Q09428 1581 aa17.32■□□□□ 0.36
PFDN5-218ENST00000552742 DNMBPQ6XZF7 1577 aa17.3■□□□□ 0.36
PFDN5-218ENST00000552742 CUX1P39880 1505 aa17.22■□□□□ 0.35
PFDN5-218ENST00000552742 IFT140Q96RY7 1462 aa17.22■□□□□ 0.35
PFDN5-218ENST00000552742 DNAJC5Q9H3Z4 198 aa17.21■□□□□ 0.35
PFDN5-218ENST00000552742 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
PFDN5-218ENST00000552742 ZNF608Q9ULD9 1512 aaPredicted RBP17.19■□□□□ 0.34
PFDN5-218ENST00000552742 RAD54L2Q9Y4B4 1467 aa17.17■□□□□ 0.34
PFDN5-218ENST00000552742 SOGA1O94964 1423 aa17.16■□□□□ 0.34
PFDN5-218ENST00000552742 TARBP1Q13395 1621 aaKnown RBP17.16■□□□□ 0.34
PFDN5-218ENST00000552742 FGD5Q6ZNL6 1462 aa17.16■□□□□ 0.34
PFDN5-218ENST00000552742 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.336e-7■■■■■ 32.7
PFDN5-218ENST00000552742 WRNQ14191 1432 aaPredicted RBP eCLIP17.1■□□□□ 0.333e-8■□□□□ 9.6
PFDN5-218ENST00000552742 TDRD9Q8NDG6 1382 aaKnown RBP17.09■□□□□ 0.33
PFDN5-218ENST00000552742 SYNJ1O43426 1573 aa17.06■□□□□ 0.32
PFDN5-218ENST00000552742 EIF4G3O43432 1585 aaKnown RBP17.06■□□□□ 0.32
PFDN5-218ENST00000552742 TOP2BQ02880 1626 aa17.05■□□□□ 0.32
PFDN5-218ENST00000552742 BIVM-ERCC5R4GMW8 1640 aa17.04■□□□□ 0.32
PFDN5-218ENST00000552742 OSCARQ8IYS5 282 aa17■□□□□ 0.31
PFDN5-218ENST00000552742 WDR97A6NE52 1622 aa16.98■□□□□ 0.31
PFDN5-218ENST00000552742 ABCA10Q8WWZ4 1543 aa16.97■□□□□ 0.31
PFDN5-218ENST00000552742 FBLN2P98095 1184 aa16.95■□□□□ 0.3
PFDN5-218ENST00000552742 GAPVD1Q14C86 1478 aa16.94■□□□□ 0.3
PFDN5-218ENST00000552742 GRIN2BQ13224 1484 aa16.93■□□□□ 0.3
PFDN5-218ENST00000552742 SNAPC4Q5SXM2 1469 aa16.9■□□□□ 0.3
PFDN5-218ENST00000552742 CHD1O14646 1710 aa16.9■□□□□ 0.3
PFDN5-218ENST00000552742 ABCA5Q8WWZ7 1642 aa16.89■□□□□ 0.29
PFDN5-218ENST00000552742 PBRM1Q86U86 1689 aa16.88■□□□□ 0.29
PFDN5-218ENST00000552742 CHMP7Q8WUX9 453 aaPredicted RBP16.87■□□□□ 0.29
PFDN5-218ENST00000552742 MAGI1Q96QZ7 1491 aaPredicted RBP16.86■□□□□ 0.29
PFDN5-218ENST00000552742 SYNJ2O15056 1496 aa16.8■□□□□ 0.28
PFDN5-218ENST00000552742 TRIM41Q8WV44 630 aa16.77■□□□□ 0.28
PFDN5-218ENST00000552742 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
PFDN5-218ENST00000552742 KIF27Q86VH2 1401 aa16.74■□□□□ 0.27
PFDN5-218ENST00000552742 IGF1RP08069 1367 aa16.73■□□□□ 0.27
PFDN5-218ENST00000552742 ADAMTS12P58397 1594 aa16.72■□□□□ 0.27
PFDN5-218ENST00000552742 FHAD1B1AJZ9 1412 aa16.72■□□□□ 0.27
PFDN5-218ENST00000552742 GRIN2AQ12879 1464 aa16.69■□□□□ 0.26
PFDN5-218ENST00000552742 RIMBP3CA6NJZ7 1639 aa16.68■□□□□ 0.26
PFDN5-218ENST00000552742 RIMBP3BA6NNM3 1639 aa16.68■□□□□ 0.26
PFDN5-218ENST00000552742 RIMBP3Q9UFD9 1639 aa16.68■□□□□ 0.26
PFDN5-218ENST00000552742 CLASP1Q7Z460 1538 aa16.67■□□□□ 0.26
PFDN5-218ENST00000552742 RUSC2Q8N2Y8 1516 aa16.66■□□□□ 0.26
PFDN5-218ENST00000552742 ARHGEF11O15085 1522 aa16.65■□□□□ 0.26
PFDN5-218ENST00000552742 CEP170Q5SW79 1584 aa16.63■□□□□ 0.25
PFDN5-218ENST00000552742 NUP160Q12769 1436 aa16.62■□□□□ 0.25
PFDN5-218ENST00000552742 CARMIL1Q5VZK9 1371 aa16.61■□□□□ 0.25
PFDN5-218ENST00000552742 CUL7Q14999 1698 aa16.6■□□□□ 0.25
PFDN5-218ENST00000552742 CYB5RLQ6IPT4 315 aa16.6■□□□□ 0.25
PFDN5-218ENST00000552742 CHIC1Q5VXU3 224 aa16.58■□□□□ 0.24
PFDN5-218ENST00000552742 JPH4Q96JJ6 628 aa16.53■□□□□ 0.24
PFDN5-218ENST00000552742 ARAP1Q96P48 1450 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms