RNA–Protein interactions for RNA: ENST00000552739.5

LETMD1-235, Transcript of LETM1 domain containing 1, humanhuman

TSL 2 BASIC

Gene LETMD1, Length 1,713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-235ENST00000552739 NISCHQ9Y2I1 1504 aa34.18■■■■□ 3.06
LETMD1-235ENST00000552739 CCDC180Q9P1Z9 1646 aa30.52■■■□□ 2.48
LETMD1-235ENST00000552739 ABCC9O60706 1549 aa29.75■■■□□ 2.35
LETMD1-235ENST00000552739 RB1CC1Q8TDY2 1594 aa28.68■■■□□ 2.18
LETMD1-235ENST00000552739 NACADO15069 1562 aa28.62■■■□□ 2.17
LETMD1-235ENST00000552739 ZCCHC6Q5VYS8 1495 aaKnown RBP28.49■■■□□ 2.15
LETMD1-235ENST00000552739 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
LETMD1-235ENST00000552739 DCAF8L2P0C7V8 631 aa28.38■■■□□ 2.13
LETMD1-235ENST00000552739 DCAF1Q9Y4B6 1507 aa28.32■■■□□ 2.12
LETMD1-235ENST00000552739 UNC13AQ9UPW8 1703 aa28.12■■■□□ 2.09
LETMD1-235ENST00000552739 BICRAQ9NZM4 1560 aa27.83■■■□□ 2.05
LETMD1-235ENST00000552739 SCRIBQ14160 1630 aa27.77■■■□□ 2.04
LETMD1-235ENST00000552739 PABPN1Q86U42 306 aaKnown RBP eCLIP27.72■■■□□ 2.03
LETMD1-235ENST00000552739 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
LETMD1-235ENST00000552739 DNAJC5BQ9UF47 199 aa27.29■■□□□ 1.96
LETMD1-235ENST00000552739 EIF4G1Q04637 1599 aaKnown RBP27.08■■□□□ 1.93
LETMD1-235ENST00000552739 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
LETMD1-235ENST00000552739 CECR2Q9BXF3 1484 aa26.75■■□□□ 1.87
LETMD1-235ENST00000552739 SMARCA4P51532 1647 aa26.58■■□□□ 1.85
LETMD1-235ENST00000552739 BAZ1AQ9NRL2 1556 aaPredicted RBP26.51■■□□□ 1.83
LETMD1-235ENST00000552739 SMARCA2P51531 1590 aa26.38■■□□□ 1.81
LETMD1-235ENST00000552739 NCAPD3P42695 1498 aa26.37■■□□□ 1.81
LETMD1-235ENST00000552739 ATAD2BQ9ULI0 1458 aa26.37■■□□□ 1.81
LETMD1-235ENST00000552739 MROH2BQ7Z745 1585 aa26.33■■□□□ 1.81
LETMD1-235ENST00000552739 PEG3Q9GZU2 1588 aa26.33■■□□□ 1.81
LETMD1-235ENST00000552739 HMGXB3Q12766 1538 aa26.31■■□□□ 1.8
LETMD1-235ENST00000552739 BAZ1BQ9UIG0 1483 aaKnown RBP26.16■■□□□ 1.78
LETMD1-235ENST00000552739 WIZO95785 1651 aa26.08■■□□□ 1.77
LETMD1-235ENST00000552739 RSF1Q96T23 1441 aaPredicted RBP25.98■■□□□ 1.75
LETMD1-235ENST00000552739 TOP2AP11388 1531 aaKnown RBP25.81■■□□□ 1.72
LETMD1-235ENST00000552739 NESP48681 1621 aa25.75■■□□□ 1.71
LETMD1-235ENST00000552739 LAMC3Q9Y6N6 1575 aa25.74■■□□□ 1.71
LETMD1-235ENST00000552739 ERCC6Q03468 1493 aa25.65■■□□□ 1.7
LETMD1-235ENST00000552739 CADPSQ9ULU8 1353 aa25.56■■□□□ 1.68
LETMD1-235ENST00000552739 KIF21AQ7Z4S6 1674 aa25.55■■□□□ 1.68
LETMD1-235ENST00000552739 PDS5BQ9NTI5 1447 aa25.48■■□□□ 1.67
LETMD1-235ENST00000552739 THOC2Q8NI27 1593 aaKnown RBP25.47■■□□□ 1.67
LETMD1-235ENST00000552739 CFTRP13569 1480 aa25.45■■□□□ 1.66
LETMD1-235ENST00000552739 CUX2O14529 1486 aa25.44■■□□□ 1.66
LETMD1-235ENST00000552739 CCDC88BA6NC98 1476 aa25.44■■□□□ 1.66
LETMD1-235ENST00000552739 PRDM2Q13029 1718 aa25.41■■□□□ 1.66
LETMD1-235ENST00000552739 FANCD2Q9BXW9 1451 aa25.31■■□□□ 1.64
LETMD1-235ENST00000552739 CEP164Q9UPV0 1460 aa25.29■■□□□ 1.64
LETMD1-235ENST00000552739 MRC2Q9UBG0 1479 aa25.28■■□□□ 1.64
LETMD1-235ENST00000552739 WDR62O43379 1518 aa25.23■■□□□ 1.63
LETMD1-235ENST00000552739 SUPT5HO00267 1087 aaKnown RBP25.16■■□□□ 1.62
LETMD1-235ENST00000552739 URB2Q14146 1524 aaKnown RBP25.08■■□□□ 1.6
LETMD1-235ENST00000552739 TOPBP1Q92547 1522 aa24.92■■□□□ 1.58
LETMD1-235ENST00000552739 DNMBPQ6XZF7 1577 aa24.92■■□□□ 1.58
LETMD1-235ENST00000552739 ABCC8Q09428 1581 aa24.9■■□□□ 1.58
LETMD1-235ENST00000552739 IFT140Q96RY7 1462 aa24.76■■□□□ 1.55
LETMD1-235ENST00000552739 CUX1P39880 1505 aa24.72■■□□□ 1.55
LETMD1-235ENST00000552739 TARBP1Q13395 1621 aaKnown RBP24.7■■□□□ 1.54
LETMD1-235ENST00000552739 POLA1P09884 1462 aaPredicted RBP24.69■■□□□ 1.54
LETMD1-235ENST00000552739 ZNF608Q9ULD9 1512 aaPredicted RBP24.64■■□□□ 1.54
LETMD1-235ENST00000552739 FGD5Q6ZNL6 1462 aa24.63■■□□□ 1.53
LETMD1-235ENST00000552739 EIF4G3O43432 1585 aaKnown RBP24.63■■□□□ 1.53
LETMD1-235ENST00000552739 DNAJC5Q9H3Z4 198 aa24.61■■□□□ 1.53
LETMD1-235ENST00000552739 BIVM-ERCC5R4GMW8 1640 aa24.55■■□□□ 1.52
LETMD1-235ENST00000552739 RAD54L2Q9Y4B4 1467 aa24.55■■□□□ 1.52
LETMD1-235ENST00000552739 WDR97A6NE52 1622 aa24.55■■□□□ 1.52
LETMD1-235ENST00000552739 SOGA1O94964 1423 aa24.54■■□□□ 1.52
LETMD1-235ENST00000552739 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
LETMD1-235ENST00000552739 SYNJ1O43426 1573 aa24.51■■□□□ 1.51
LETMD1-235ENST00000552739 WRNQ14191 1432 aaPredicted RBP eCLIP24.5■■□□□ 1.51
LETMD1-235ENST00000552739 AQRO60306 1485 aaKnown RBP eCLIP24.46■■□□□ 1.511e-6■■□□□ 12.7
LETMD1-235ENST00000552739 ABCA10Q8WWZ4 1543 aa24.39■■□□□ 1.5
LETMD1-235ENST00000552739 TDRD9Q8NDG6 1382 aaKnown RBP24.39■■□□□ 1.49
LETMD1-235ENST00000552739 ABCA5Q8WWZ7 1642 aa24.37■■□□□ 1.49
LETMD1-235ENST00000552739 PBRM1Q86U86 1689 aa24.36■■□□□ 1.49
LETMD1-235ENST00000552739 CHD1O14646 1710 aa24.35■■□□□ 1.49
LETMD1-235ENST00000552739 GRIN2BQ13224 1484 aa24.3■■□□□ 1.48
LETMD1-235ENST00000552739 GAPVD1Q14C86 1478 aa24.28■■□□□ 1.48
LETMD1-235ENST00000552739 SNAPC4Q5SXM2 1469 aa24.28■■□□□ 1.48
LETMD1-235ENST00000552739 MAGI1Q96QZ7 1491 aaPredicted RBP24.27■■□□□ 1.48
LETMD1-235ENST00000552739 OSCARQ8IYS5 282 aa24.26■■□□□ 1.47
LETMD1-235ENST00000552739 SYNJ2O15056 1496 aa24.16■■□□□ 1.46
LETMD1-235ENST00000552739 ADAMTS12P58397 1594 aa24.13■■□□□ 1.45
LETMD1-235ENST00000552739 ERICH3Q5RHP9 1530 aa24.12■■□□□ 1.45
LETMD1-235ENST00000552739 FBLN2P98095 1184 aa24.1■■□□□ 1.45
LETMD1-235ENST00000552739 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
LETMD1-235ENST00000552739 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
LETMD1-235ENST00000552739 RIMBP3CA6NJZ7 1639 aa24.03■■□□□ 1.44
LETMD1-235ENST00000552739 RIMBP3BA6NNM3 1639 aa24.03■■□□□ 1.44
LETMD1-235ENST00000552739 RIMBP3Q9UFD9 1639 aa24.03■■□□□ 1.44
LETMD1-235ENST00000552739 GRIN2AQ12879 1464 aa24■■□□□ 1.43
LETMD1-235ENST00000552739 FHAD1B1AJZ9 1412 aa24■■□□□ 1.43
LETMD1-235ENST00000552739 ARHGEF11O15085 1522 aa23.98■■□□□ 1.43
LETMD1-235ENST00000552739 KIF27Q86VH2 1401 aa23.98■■□□□ 1.43
LETMD1-235ENST00000552739 CUL7Q14999 1698 aa23.93■■□□□ 1.42
LETMD1-235ENST00000552739 CEP170Q5SW79 1584 aa23.93■■□□□ 1.42
LETMD1-235ENST00000552739 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
LETMD1-235ENST00000552739 NUP160Q12769 1436 aa23.89■■□□□ 1.42
LETMD1-235ENST00000552739 IGF1RP08069 1367 aa23.86■■□□□ 1.41
LETMD1-235ENST00000552739 SHROOM2Q13796 1616 aa23.8■■□□□ 1.4
LETMD1-235ENST00000552739 ARAP1Q96P48 1450 aa23.79■■□□□ 1.4
LETMD1-235ENST00000552739 RUSC2Q8N2Y8 1516 aa23.79■■□□□ 1.4
LETMD1-235ENST00000552739 TRIM41Q8WV44 630 aa23.78■■□□□ 1.4
LETMD1-235ENST00000552739 CARMIL1Q5VZK9 1371 aa23.71■■□□□ 1.39
LETMD1-235ENST00000552739 ERCC6L2Q5T890 1561 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms