RNA–Protein interactions for RNA: ENST00000551801.1

PACS2-213, Transcript of phosphofurin acidic cluster sorting protein 2, humanhuman

TSL 3

Gene PACS2, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PACS2-213ENST00000551801 NISCHQ9Y2I1 1504 aa34.9■■■■□ 3.18
PACS2-213ENST00000551801 CCDC180Q9P1Z9 1646 aa31.11■■■□□ 2.57
PACS2-213ENST00000551801 ABCC9O60706 1549 aa30.3■■■□□ 2.44
PACS2-213ENST00000551801 RB1CC1Q8TDY2 1594 aa29.17■■■□□ 2.26
PACS2-213ENST00000551801 ZCCHC6Q5VYS8 1495 aaKnown RBP29.13■■■□□ 2.25
PACS2-213ENST00000551801 NACADO15069 1562 aa29.12■■■□□ 2.25
PACS2-213ENST00000551801 MYO15BQ96JP2 1530 aa28.94■■■□□ 2.22
PACS2-213ENST00000551801 DCAF8L2P0C7V8 631 aa28.92■■■□□ 2.22
PACS2-213ENST00000551801 DCAF1Q9Y4B6 1507 aa28.86■■■□□ 2.21
PACS2-213ENST00000551801 UNC13AQ9UPW8 1703 aa28.72■■■□□ 2.19
PACS2-213ENST00000551801 SCRIBQ14160 1630 aa28.4■■■□□ 2.14
PACS2-213ENST00000551801 BICRAQ9NZM4 1560 aa28.37■■■□□ 2.13
PACS2-213ENST00000551801 PABPN1Q86U42 306 aaKnown RBP eCLIP28.22■■■□□ 2.111e-6■■■■□ 24.5
PACS2-213ENST00000551801 SHROOM4Q9ULL8 1493 aa27.97■■■□□ 2.07
PACS2-213ENST00000551801 DNAJC5BQ9UF47 199 aa27.69■■■□□ 2.02
PACS2-213ENST00000551801 EIF4G1Q04637 1599 aaKnown RBP27.57■■■□□ 2
PACS2-213ENST00000551801 CC2D2AQ9P2K1 1620 aa27.46■■□□□ 1.99
PACS2-213ENST00000551801 CECR2Q9BXF3 1484 aa27.2■■□□□ 1.95
PACS2-213ENST00000551801 SMARCA4P51532 1647 aa27.14■■□□□ 1.94
PACS2-213ENST00000551801 BAZ1AQ9NRL2 1556 aaPredicted RBP27.05■■□□□ 1.92
PACS2-213ENST00000551801 MROH2BQ7Z745 1585 aa26.93■■□□□ 1.9
PACS2-213ENST00000551801 ATAD2BQ9ULI0 1458 aa26.89■■□□□ 1.9
PACS2-213ENST00000551801 SMARCA2P51531 1590 aa26.87■■□□□ 1.89
PACS2-213ENST00000551801 PEG3Q9GZU2 1588 aa26.85■■□□□ 1.89
PACS2-213ENST00000551801 NCAPD3P42695 1498 aa26.82■■□□□ 1.88
PACS2-213ENST00000551801 HMGXB3Q12766 1538 aa26.8■■□□□ 1.88
PACS2-213ENST00000551801 WIZO95785 1651 aa26.7■■□□□ 1.86
PACS2-213ENST00000551801 BAZ1BQ9UIG0 1483 aaKnown RBP26.68■■□□□ 1.86
PACS2-213ENST00000551801 RSF1Q96T23 1441 aaPredicted RBP26.57■■□□□ 1.84
PACS2-213ENST00000551801 TOP2AP11388 1531 aaKnown RBP26.38■■□□□ 1.81
PACS2-213ENST00000551801 NESP48681 1621 aa26.27■■□□□ 1.8
PACS2-213ENST00000551801 LAMC3Q9Y6N6 1575 aa26.18■■□□□ 1.78
PACS2-213ENST00000551801 KIF21AQ7Z4S6 1674 aa26.07■■□□□ 1.76
PACS2-213ENST00000551801 ERCC6Q03468 1493 aa26.06■■□□□ 1.76
PACS2-213ENST00000551801 CADPSQ9ULU8 1353 aa26.01■■□□□ 1.75
PACS2-213ENST00000551801 CCDC88BA6NC98 1476 aa26■■□□□ 1.75
PACS2-213ENST00000551801 PRDM2Q13029 1718 aa25.96■■□□□ 1.75
PACS2-213ENST00000551801 THOC2Q8NI27 1593 aaKnown RBP25.95■■□□□ 1.74
PACS2-213ENST00000551801 CFTRP13569 1480 aa25.92■■□□□ 1.74
PACS2-213ENST00000551801 PDS5BQ9NTI5 1447 aa25.88■■□□□ 1.73
PACS2-213ENST00000551801 SUPT5HO00267 1087 aaKnown RBP25.83■■□□□ 1.73
PACS2-213ENST00000551801 FANCD2Q9BXW9 1451 aa25.79■■□□□ 1.72
PACS2-213ENST00000551801 CUX2O14529 1486 aa25.78■■□□□ 1.72
PACS2-213ENST00000551801 CEP164Q9UPV0 1460 aa25.76■■□□□ 1.71
PACS2-213ENST00000551801 MRC2Q9UBG0 1479 aa25.72■■□□□ 1.71
PACS2-213ENST00000551801 WDR62O43379 1518 aa25.68■■□□□ 1.7
PACS2-213ENST00000551801 URB2Q14146 1524 aaKnown RBP25.59■■□□□ 1.69
PACS2-213ENST00000551801 DNMBPQ6XZF7 1577 aa25.42■■□□□ 1.66
PACS2-213ENST00000551801 TOPBP1Q92547 1522 aa25.42■■□□□ 1.66
PACS2-213ENST00000551801 ABCC8Q09428 1581 aa25.3■■□□□ 1.64
PACS2-213ENST00000551801 CUX1P39880 1505 aa25.28■■□□□ 1.64
PACS2-213ENST00000551801 POLA1P09884 1462 aaPredicted RBP25.21■■□□□ 1.63
PACS2-213ENST00000551801 TARBP1Q13395 1621 aaKnown RBP25.19■■□□□ 1.62
PACS2-213ENST00000551801 IFT140Q96RY7 1462 aa25.19■■□□□ 1.62
PACS2-213ENST00000551801 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
PACS2-213ENST00000551801 ZNF608Q9ULD9 1512 aaPredicted RBP25.14■■□□□ 1.62
PACS2-213ENST00000551801 EIF4G3O43432 1585 aaKnown RBP25.13■■□□□ 1.61
PACS2-213ENST00000551801 SYNJ1O43426 1573 aa25.12■■□□□ 1.61
PACS2-213ENST00000551801 BIVM-ERCC5R4GMW8 1640 aa25.12■■□□□ 1.61
PACS2-213ENST00000551801 WDR97A6NE52 1622 aa25.09■■□□□ 1.61
PACS2-213ENST00000551801 RAD54L2Q9Y4B4 1467 aa25.08■■□□□ 1.6
PACS2-213ENST00000551801 TOP2BQ02880 1626 aa25.07■■□□□ 1.6
PACS2-213ENST00000551801 WRNQ14191 1432 aaPredicted RBP eCLIP25.03■■□□□ 1.6
PACS2-213ENST00000551801 SOGA1O94964 1423 aa24.99■■□□□ 1.59
PACS2-213ENST00000551801 AQRO60306 1485 aaKnown RBP eCLIP24.94■■□□□ 1.58
PACS2-213ENST00000551801 ABCA5Q8WWZ7 1642 aa24.9■■□□□ 1.58
PACS2-213ENST00000551801 PBRM1Q86U86 1689 aa24.88■■□□□ 1.57
PACS2-213ENST00000551801 ABCA10Q8WWZ4 1543 aa24.88■■□□□ 1.57
PACS2-213ENST00000551801 TDRD9Q8NDG6 1382 aaKnown RBP24.87■■□□□ 1.57
PACS2-213ENST00000551801 CHD1O14646 1710 aa24.83■■□□□ 1.57
PACS2-213ENST00000551801 DNAJC5Q9H3Z4 198 aa24.81■■□□□ 1.56
PACS2-213ENST00000551801 SNAPC4Q5SXM2 1469 aa24.77■■□□□ 1.56
PACS2-213ENST00000551801 GAPVD1Q14C86 1478 aa24.76■■□□□ 1.55
PACS2-213ENST00000551801 GRIN2BQ13224 1484 aa24.74■■□□□ 1.55
PACS2-213ENST00000551801 MAGI1Q96QZ7 1491 aaPredicted RBP24.7■■□□□ 1.54
PACS2-213ENST00000551801 ADAMTS12P58397 1594 aa24.65■■□□□ 1.54
PACS2-213ENST00000551801 SYNJ2O15056 1496 aa24.6■■□□□ 1.53
PACS2-213ENST00000551801 ERICH3Q5RHP9 1530 aa24.59■■□□□ 1.53
PACS2-213ENST00000551801 OSCARQ8IYS5 282 aa24.56■■□□□ 1.52
PACS2-213ENST00000551801 FBLN2P98095 1184 aa24.52■■□□□ 1.52
PACS2-213ENST00000551801 CLASP1Q7Z460 1538 aa24.5■■□□□ 1.51
PACS2-213ENST00000551801 GRIN2AQ12879 1464 aa24.47■■□□□ 1.51
PACS2-213ENST00000551801 KIF27Q86VH2 1401 aa24.47■■□□□ 1.51
PACS2-213ENST00000551801 FHAD1B1AJZ9 1412 aa24.45■■□□□ 1.51
PACS2-213ENST00000551801 CUL7Q14999 1698 aa24.44■■□□□ 1.5
PACS2-213ENST00000551801 CHMP7Q8WUX9 453 aaPredicted RBP24.43■■□□□ 1.5
PACS2-213ENST00000551801 RIMBP3CA6NJZ7 1639 aa24.43■■□□□ 1.5
PACS2-213ENST00000551801 RIMBP3BA6NNM3 1639 aa24.43■■□□□ 1.5
PACS2-213ENST00000551801 RIMBP3Q9UFD9 1639 aa24.43■■□□□ 1.5
PACS2-213ENST00000551801 CEP170Q5SW79 1584 aa24.42■■□□□ 1.5
PACS2-213ENST00000551801 ARHGEF11O15085 1522 aa24.37■■□□□ 1.49
PACS2-213ENST00000551801 RUSC2Q8N2Y8 1516 aa24.37■■□□□ 1.49
PACS2-213ENST00000551801 IGF1RP08069 1367 aa24.35■■□□□ 1.49
PACS2-213ENST00000551801 NUP160Q12769 1436 aa24.35■■□□□ 1.49
PACS2-213ENST00000551801 TRIM41Q8WV44 630 aa24.34■■□□□ 1.49
PACS2-213ENST00000551801 SHROOM2Q13796 1616 aa24.25■■□□□ 1.47
PACS2-213ENST00000551801 ARAP1Q96P48 1450 aa24.19■■□□□ 1.46
PACS2-213ENST00000551801 CARMIL1Q5VZK9 1371 aa24.19■■□□□ 1.46
PACS2-213ENST00000551801 ERCC6L2Q5T890 1561 aa24.19■■□□□ 1.46
PACS2-213ENST00000551801 CHIC1Q5VXU3 224 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms