RNA–Protein interactions for RNA: ENST00000551549.1

GCN1-208, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 2

Gene GCN1, Length 258 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-208ENST00000551549 NISCHQ9Y2I1 1504 aa24.1■■□□□ 1.45
GCN1-208ENST00000551549 CCDC180Q9P1Z9 1646 aa21.44■■□□□ 1.02
GCN1-208ENST00000551549 ABCC9O60706 1549 aa21.43■■□□□ 1.02
GCN1-208ENST00000551549 RB1CC1Q8TDY2 1594 aa20.39■□□□□ 0.85
GCN1-208ENST00000551549 DCAF8L2P0C7V8 631 aa20.37■□□□□ 0.85
GCN1-208ENST00000551549 NACADO15069 1562 aa20.3■□□□□ 0.84
GCN1-208ENST00000551549 MYO15BQ96JP2 1530 aa20.07■□□□□ 0.8
GCN1-208ENST00000551549 PABPN1Q86U42 306 aaKnown RBP eCLIP20.05■□□□□ 0.8
GCN1-208ENST00000551549 DNAJC5BQ9UF47 199 aa20.04■□□□□ 0.8
GCN1-208ENST00000551549 ZCCHC6Q5VYS8 1495 aaKnown RBP19.99■□□□□ 0.79
GCN1-208ENST00000551549 DCAF1Q9Y4B6 1507 aa19.88■□□□□ 0.77
GCN1-208ENST00000551549 UNC13AQ9UPW8 1703 aa19.88■□□□□ 0.77
GCN1-208ENST00000551549 BICRAQ9NZM4 1560 aa19.83■□□□□ 0.76
GCN1-208ENST00000551549 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
GCN1-208ENST00000551549 SHROOM4Q9ULL8 1493 aa19.53■□□□□ 0.72
GCN1-208ENST00000551549 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
GCN1-208ENST00000551549 CC2D2AQ9P2K1 1620 aa19.32■□□□□ 0.68
GCN1-208ENST00000551549 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
GCN1-208ENST00000551549 NCAPD3P42695 1498 aa18.78■□□□□ 0.6
GCN1-208ENST00000551549 ATAD2BQ9ULI0 1458 aa18.76■□□□□ 0.59
GCN1-208ENST00000551549 SMARCA4P51532 1647 aa18.73■□□□□ 0.59
GCN1-208ENST00000551549 SMARCA2P51531 1590 aa18.66■□□□□ 0.58
GCN1-208ENST00000551549 BAZ1AQ9NRL2 1556 aaPredicted RBP18.66■□□□□ 0.58
GCN1-208ENST00000551549 HMGXB3Q12766 1538 aa18.6■□□□□ 0.57
GCN1-208ENST00000551549 MROH2BQ7Z745 1585 aa18.59■□□□□ 0.57
GCN1-208ENST00000551549 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
GCN1-208ENST00000551549 PEG3Q9GZU2 1588 aa18.54■□□□□ 0.56
GCN1-208ENST00000551549 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
GCN1-208ENST00000551549 NESP48681 1621 aa18.46■□□□□ 0.55
GCN1-208ENST00000551549 CUX2O14529 1486 aa18.35■□□□□ 0.53
GCN1-208ENST00000551549 WIZO95785 1651 aa18.34■□□□□ 0.53
GCN1-208ENST00000551549 RSF1Q96T23 1441 aaPredicted RBP18.29■□□□□ 0.52
GCN1-208ENST00000551549 LAMC3Q9Y6N6 1575 aa18.27■□□□□ 0.52
GCN1-208ENST00000551549 DNAJC5Q9H3Z4 198 aa18.24■□□□□ 0.51
GCN1-208ENST00000551549 CADPSQ9ULU8 1353 aa18.24■□□□□ 0.51
GCN1-208ENST00000551549 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
GCN1-208ENST00000551549 THOC2Q8NI27 1593 aaKnown RBP18.17■□□□□ 0.5
GCN1-208ENST00000551549 KIF21AQ7Z4S6 1674 aa18.13■□□□□ 0.49
GCN1-208ENST00000551549 TOP2AP11388 1531 aaKnown RBP18.12■□□□□ 0.49
GCN1-208ENST00000551549 CFTRP13569 1480 aa18.05■□□□□ 0.48
GCN1-208ENST00000551549 MRC2Q9UBG0 1479 aa18.05■□□□□ 0.48
GCN1-208ENST00000551549 FANCD2Q9BXW9 1451 aa18.02■□□□□ 0.48
GCN1-208ENST00000551549 CEP164Q9UPV0 1460 aa18■□□□□ 0.47
GCN1-208ENST00000551549 WDR62O43379 1518 aa17.98■□□□□ 0.47
GCN1-208ENST00000551549 CCDC88BA6NC98 1476 aa17.96■□□□□ 0.47
GCN1-208ENST00000551549 URB2Q14146 1524 aaKnown RBP17.87■□□□□ 0.45
GCN1-208ENST00000551549 PRDM2Q13029 1718 aa17.73■□□□□ 0.43
GCN1-208ENST00000551549 TOPBP1Q92547 1522 aa17.68■□□□□ 0.42
GCN1-208ENST00000551549 SUPT5HO00267 1087 aaKnown RBP17.65■□□□□ 0.42
GCN1-208ENST00000551549 IFT140Q96RY7 1462 aa17.64■□□□□ 0.41
GCN1-208ENST00000551549 ZNF608Q9ULD9 1512 aaPredicted RBP17.64■□□□□ 0.41
GCN1-208ENST00000551549 ABCC8Q09428 1581 aa17.63■□□□□ 0.41
GCN1-208ENST00000551549 OSCARQ8IYS5 282 aa17.61■□□□□ 0.41
GCN1-208ENST00000551549 DNMBPQ6XZF7 1577 aa17.61■□□□□ 0.41
GCN1-208ENST00000551549 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
GCN1-208ENST00000551549 POLA1P09884 1462 aaPredicted RBP17.52■□□□□ 0.4
GCN1-208ENST00000551549 AQRO60306 1485 aaKnown RBP eCLIP17.51■□□□□ 0.391e-6■■■■□ 20.5
GCN1-208ENST00000551549 TARBP1Q13395 1621 aaKnown RBP17.49■□□□□ 0.39
GCN1-208ENST00000551549 RAD54L2Q9Y4B4 1467 aa17.49■□□□□ 0.39
GCN1-208ENST00000551549 SOGA1O94964 1423 aa17.47■□□□□ 0.39
GCN1-208ENST00000551549 EIF4G3O43432 1585 aaKnown RBP17.47■□□□□ 0.39
GCN1-208ENST00000551549 CUX1P39880 1505 aa17.45■□□□□ 0.38
GCN1-208ENST00000551549 TDRD9Q8NDG6 1382 aaKnown RBP17.44■□□□□ 0.38
GCN1-208ENST00000551549 FGD5Q6ZNL6 1462 aa17.44■□□□□ 0.38
GCN1-208ENST00000551549 FBLN2P98095 1184 aa17.38■□□□□ 0.37
GCN1-208ENST00000551549 SNAPC4Q5SXM2 1469 aa17.31■□□□□ 0.36
GCN1-208ENST00000551549 RIMBP3CA6NJZ7 1639 aa17.29■□□□□ 0.36
GCN1-208ENST00000551549 RIMBP3BA6NNM3 1639 aa17.29■□□□□ 0.36
GCN1-208ENST00000551549 RIMBP3Q9UFD9 1639 aa17.29■□□□□ 0.36
GCN1-208ENST00000551549 CHD1O14646 1710 aa17.28■□□□□ 0.36
GCN1-208ENST00000551549 ARHGEF11O15085 1522 aa17.27■□□□□ 0.36
GCN1-208ENST00000551549 GRIN2BQ13224 1484 aa17.27■□□□□ 0.36
GCN1-208ENST00000551549 CHMP7Q8WUX9 453 aaPredicted RBP17.27■□□□□ 0.36
GCN1-208ENST00000551549 WDR97A6NE52 1622 aa17.27■□□□□ 0.36
GCN1-208ENST00000551549 GAPVD1Q14C86 1478 aa17.24■□□□□ 0.35
GCN1-208ENST00000551549 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
GCN1-208ENST00000551549 MAGI1Q96QZ7 1491 aaPredicted RBP17.23■□□□□ 0.35
GCN1-208ENST00000551549 WRNQ14191 1432 aaPredicted RBP eCLIP17.22■□□□□ 0.35
GCN1-208ENST00000551549 CYB5RLQ6IPT4 315 aa17.22■□□□□ 0.35
GCN1-208ENST00000551549 SYNJ2O15056 1496 aa17.19■□□□□ 0.34
GCN1-208ENST00000551549 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
GCN1-208ENST00000551549 TOP2BQ02880 1626 aa17.18■□□□□ 0.34
GCN1-208ENST00000551549 ABCA5Q8WWZ7 1642 aa17.16■□□□□ 0.34
GCN1-208ENST00000551549 BIVM-ERCC5R4GMW8 1640 aa17.14■□□□□ 0.33
GCN1-208ENST00000551549 CLASP1Q7Z460 1538 aa17.14■□□□□ 0.33
GCN1-208ENST00000551549 PBRM1Q86U86 1689 aa17.13■□□□□ 0.33
GCN1-208ENST00000551549 ARAP1Q96P48 1450 aa17.13■□□□□ 0.33
GCN1-208ENST00000551549 GRIN2AQ12879 1464 aa17.05■□□□□ 0.32
GCN1-208ENST00000551549 FHAD1B1AJZ9 1412 aa17.03■□□□□ 0.32
GCN1-208ENST00000551549 ADAMTS12P58397 1594 aa17.02■□□□□ 0.32
GCN1-208ENST00000551549 ERICH3Q5RHP9 1530 aa17.01■□□□□ 0.31
GCN1-208ENST00000551549 NUP160Q12769 1436 aa16.99■□□□□ 0.31
GCN1-208ENST00000551549 CEP170Q5SW79 1584 aa16.97■□□□□ 0.31
GCN1-208ENST00000551549 TRHP20396 242 aaPredicted RBP16.96■□□□□ 0.31
GCN1-208ENST00000551549 ERCC6L2Q5T890 1561 aa16.92■□□□□ 0.3
GCN1-208ENST00000551549 IGF1RP08069 1367 aa16.91■□□□□ 0.3
GCN1-208ENST00000551549 KIF27Q86VH2 1401 aa16.88■□□□□ 0.29
GCN1-208ENST00000551549 JPH4Q96JJ6 628 aa16.87■□□□□ 0.29
GCN1-208ENST00000551549 PRG4Q92954 1404 aaPredicted RBP16.84■□□□□ 0.29
GCN1-208ENST00000551549 SHROOM2Q13796 1616 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms