RNA–Protein interactions for RNA: ENST00000551261.5

LETMD1-229, Transcript of LETM1 domain containing 1, humanhuman

TSL 5

Gene LETMD1, Length 521 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-229ENST00000551261 NISCHQ9Y2I1 1504 aa32.74■■■□□ 2.83
LETMD1-229ENST00000551261 CCDC180Q9P1Z9 1646 aa28.83■■■□□ 2.21
LETMD1-229ENST00000551261 ZCCHC6Q5VYS8 1495 aaKnown RBP27.51■■■□□ 2
LETMD1-229ENST00000551261 DCAF1Q9Y4B6 1507 aa27.27■■□□□ 1.96
LETMD1-229ENST00000551261 MYO15BQ96JP2 1530 aa27.07■■□□□ 1.92
LETMD1-229ENST00000551261 ABCC9O60706 1549 aa27.06■■□□□ 1.92
LETMD1-229ENST00000551261 NACADO15069 1562 aa26.84■■□□□ 1.89
LETMD1-229ENST00000551261 DCAF8L2P0C7V8 631 aa26.71■■□□□ 1.87
LETMD1-229ENST00000551261 RB1CC1Q8TDY2 1594 aa26.63■■□□□ 1.85
LETMD1-229ENST00000551261 SHROOM4Q9ULL8 1493 aa26.2■■□□□ 1.78
LETMD1-229ENST00000551261 SCRIBQ14160 1630 aa26.2■■□□□ 1.78
LETMD1-229ENST00000551261 UNC13AQ9UPW8 1703 aa25.92■■□□□ 1.74
LETMD1-229ENST00000551261 BICRAQ9NZM4 1560 aa25.67■■□□□ 1.7
LETMD1-229ENST00000551261 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.65
LETMD1-229ENST00000551261 PABPN1Q86U42 306 aaKnown RBP eCLIP25.33■■□□□ 1.65
LETMD1-229ENST00000551261 CECR2Q9BXF3 1484 aa25.27■■□□□ 1.64
LETMD1-229ENST00000551261 RSF1Q96T23 1441 aaPredicted RBP25.24■■□□□ 1.63
LETMD1-229ENST00000551261 SMARCA4P51532 1647 aa25.22■■□□□ 1.63
LETMD1-229ENST00000551261 MROH2BQ7Z745 1585 aa25.17■■□□□ 1.62
LETMD1-229ENST00000551261 SUPT5HO00267 1087 aaKnown RBP25.15■■□□□ 1.62
LETMD1-229ENST00000551261 PEG3Q9GZU2 1588 aa25.04■■□□□ 1.6
LETMD1-229ENST00000551261 EIF4G1Q04637 1599 aaKnown RBP24.97■■□□□ 1.59
LETMD1-229ENST00000551261 WIZO95785 1651 aa24.94■■□□□ 1.58
LETMD1-229ENST00000551261 SMARCA2P51531 1590 aa24.93■■□□□ 1.58
LETMD1-229ENST00000551261 TOP2AP11388 1531 aaKnown RBP24.86■■□□□ 1.57
LETMD1-229ENST00000551261 ATAD2BQ9ULI0 1458 aa24.81■■□□□ 1.56
LETMD1-229ENST00000551261 HMGXB3Q12766 1538 aa24.74■■□□□ 1.55
LETMD1-229ENST00000551261 NCAPD3P42695 1498 aa24.7■■□□□ 1.54
LETMD1-229ENST00000551261 BAZ1BQ9UIG0 1483 aaKnown RBP24.69■■□□□ 1.54
LETMD1-229ENST00000551261 CC2D2AQ9P2K1 1620 aa24.59■■□□□ 1.53
LETMD1-229ENST00000551261 CCDC88BA6NC98 1476 aa24.45■■□□□ 1.5
LETMD1-229ENST00000551261 CFTRP13569 1480 aa24.07■■□□□ 1.44
LETMD1-229ENST00000551261 CHIC1Q5VXU3 224 aa24.07■■□□□ 1.44
LETMD1-229ENST00000551261 PRDM2Q13029 1718 aa24.06■■□□□ 1.44
LETMD1-229ENST00000551261 CADPSQ9ULU8 1353 aa23.99■■□□□ 1.43
LETMD1-229ENST00000551261 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.43
LETMD1-229ENST00000551261 WRNQ14191 1432 aaPredicted RBP eCLIP23.83■■□□□ 1.4
LETMD1-229ENST00000551261 TRIM41Q8WV44 630 aa23.81■■□□□ 1.4
LETMD1-229ENST00000551261 DNAJC5BQ9UF47 199 aa23.81■■□□□ 1.4
LETMD1-229ENST00000551261 ABCC8Q09428 1581 aa23.8■■□□□ 1.4
LETMD1-229ENST00000551261 PDS5BQ9NTI5 1447 aa23.72■■□□□ 1.39
LETMD1-229ENST00000551261 FANCD2Q9BXW9 1451 aa23.72■■□□□ 1.39
LETMD1-229ENST00000551261 TOP2BQ02880 1626 aa23.71■■□□□ 1.39
LETMD1-229ENST00000551261 BIVM-ERCC5R4GMW8 1640 aa23.71■■□□□ 1.39
LETMD1-229ENST00000551261 SYNJ1O43426 1573 aa23.67■■□□□ 1.38
LETMD1-229ENST00000551261 NESP48681 1621 aa23.66■■□□□ 1.38
LETMD1-229ENST00000551261 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.38
LETMD1-229ENST00000551261 CUX1P39880 1505 aa23.58■■□□□ 1.36
LETMD1-229ENST00000551261 EEA1Q15075 1411 aa23.56■■□□□ 1.36
LETMD1-229ENST00000551261 DNMBPQ6XZF7 1577 aa23.56■■□□□ 1.36
LETMD1-229ENST00000551261 KIF21AQ7Z4S6 1674 aa23.5■■□□□ 1.35
LETMD1-229ENST00000551261 TOPBP1Q92547 1522 aa23.44■■□□□ 1.34
LETMD1-229ENST00000551261 MRC2Q9UBG0 1479 aa23.41■■□□□ 1.34
LETMD1-229ENST00000551261 URB2Q14146 1524 aaKnown RBP23.38■■□□□ 1.33
LETMD1-229ENST00000551261 FGD5Q6ZNL6 1462 aa23.37■■□□□ 1.33
LETMD1-229ENST00000551261 ERCC6Q03468 1493 aa23.34■■□□□ 1.33
LETMD1-229ENST00000551261 WDR62O43379 1518 aa23.32■■□□□ 1.32
LETMD1-229ENST00000551261 POLA1P09884 1462 aaPredicted RBP23.3■■□□□ 1.32
LETMD1-229ENST00000551261 SOGA1O94964 1423 aa23.3■■□□□ 1.32
LETMD1-229ENST00000551261 KIF27Q86VH2 1401 aa23.28■■□□□ 1.32
LETMD1-229ENST00000551261 ABCA10Q8WWZ4 1543 aa23.26■■□□□ 1.31
LETMD1-229ENST00000551261 THOC2Q8NI27 1593 aaKnown RBP23.25■■□□□ 1.31
LETMD1-229ENST00000551261 WDR97A6NE52 1622 aa23.21■■□□□ 1.31
LETMD1-229ENST00000551261 CSRNP3Q8WYN3 585 aa23.19■■□□□ 1.3
LETMD1-229ENST00000551261 KIF21BO75037 1637 aa23.19■■□□□ 1.3
LETMD1-229ENST00000551261 CUX2O14529 1486 aa23.17■■□□□ 1.3
LETMD1-229ENST00000551261 RUSC2Q8N2Y8 1516 aa23.15■■□□□ 1.3
LETMD1-229ENST00000551261 FAM9AQ8IZU1 332 aaPredicted RBP23.14■■□□□ 1.29
LETMD1-229ENST00000551261 IFT140Q96RY7 1462 aa23.12■■□□□ 1.29
LETMD1-229ENST00000551261 TARBP1Q13395 1621 aaKnown RBP23.12■■□□□ 1.29
LETMD1-229ENST00000551261 ERICH3Q5RHP9 1530 aa23.11■■□□□ 1.29
LETMD1-229ENST00000551261 GOLGA3Q08378 1498 aa23.11■■□□□ 1.29
LETMD1-229ENST00000551261 RAD54L2Q9Y4B4 1467 aa23.09■■□□□ 1.29
LETMD1-229ENST00000551261 ABCA5Q8WWZ7 1642 aa23.08■■□□□ 1.29
LETMD1-229ENST00000551261 PRXQ9BXM0 1461 aa23.05■■□□□ 1.28
LETMD1-229ENST00000551261 CUL7Q14999 1698 aa23.03■■□□□ 1.28
LETMD1-229ENST00000551261 GAPVD1Q14C86 1478 aa22.98■■□□□ 1.27
LETMD1-229ENST00000551261 IGF1RP08069 1367 aa22.97■■□□□ 1.27
LETMD1-229ENST00000551261 LOC105371045A0A1W2PR82 267 aa22.95■■□□□ 1.26
LETMD1-229ENST00000551261 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
LETMD1-229ENST00000551261 RAPGEF2Q9Y4G8 1499 aa22.91■■□□□ 1.26
LETMD1-229ENST00000551261 PBRM1Q86U86 1689 aa22.9■■□□□ 1.26
LETMD1-229ENST00000551261 GRIN2BQ13224 1484 aa22.88■■□□□ 1.25
LETMD1-229ENST00000551261 CARMIL1Q5VZK9 1371 aa22.88■■□□□ 1.25
LETMD1-229ENST00000551261 TDRD9Q8NDG6 1382 aaKnown RBP22.88■■□□□ 1.25
LETMD1-229ENST00000551261 EIF4G3O43432 1585 aaKnown RBP22.86■■□□□ 1.25
LETMD1-229ENST00000551261 UBTFP17480 764 aaKnown RBP22.8■■□□□ 1.24
LETMD1-229ENST00000551261 ADAMTS12P58397 1594 aa22.8■■□□□ 1.24
LETMD1-229ENST00000551261 ZNF608Q9ULD9 1512 aaPredicted RBP22.79■■□□□ 1.24
LETMD1-229ENST00000551261 FHAD1B1AJZ9 1412 aa22.78■■□□□ 1.24
LETMD1-229ENST00000551261 CEP162Q5TB80 1403 aa22.77■■□□□ 1.24
LETMD1-229ENST00000551261 AQRO60306 1485 aaKnown RBP eCLIP22.77■■□□□ 1.249e-11■□□□□ 10.1
LETMD1-229ENST00000551261 MAGI1Q96QZ7 1491 aaPredicted RBP22.77■■□□□ 1.24
LETMD1-229ENST00000551261 CTTNBP2Q8WZ74 1663 aa22.68■■□□□ 1.22
LETMD1-229ENST00000551261 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
LETMD1-229ENST00000551261 EHMT2Q96KQ7 1210 aa22.66■■□□□ 1.22
LETMD1-229ENST00000551261 CLIP1P30622 1438 aa22.65■■□□□ 1.22
LETMD1-229ENST00000551261 SYNJ2O15056 1496 aa22.63■■□□□ 1.21
LETMD1-229ENST00000551261 EFCAB5A4FU69 1503 aa22.58■■□□□ 1.21
LETMD1-229ENST00000551261 GRIN2AQ12879 1464 aa22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms