RNA–Protein interactions for RNA: ENST00000550880.5

PFDN5-212, Transcript of prefoldin subunit 5, humanhuman

TSL 2

Gene PFDN5, Length 595 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN5-212ENST00000550880 NISCHQ9Y2I1 1504 aa27.95■■■□□ 2.06
PFDN5-212ENST00000550880 ABCC9O60706 1549 aa25.51■■□□□ 1.67
PFDN5-212ENST00000550880 CCDC180Q9P1Z9 1646 aa25.18■■□□□ 1.62
PFDN5-212ENST00000550880 RB1CC1Q8TDY2 1594 aa24.16■■□□□ 1.46
PFDN5-212ENST00000550880 DNAJC5BQ9UF47 199 aa24.16■■□□□ 1.46
PFDN5-212ENST00000550880 NACADO15069 1562 aa23.93■■□□□ 1.42
PFDN5-212ENST00000550880 DCAF8L2P0C7V8 631 aa23.87■■□□□ 1.41
PFDN5-212ENST00000550880 PABPN1Q86U42 306 aaKnown RBP eCLIP23.75■■□□□ 1.39
PFDN5-212ENST00000550880 MYO15BQ96JP2 1530 aa23.49■■□□□ 1.35
PFDN5-212ENST00000550880 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
PFDN5-212ENST00000550880 BICRAQ9NZM4 1560 aa23.38■■□□□ 1.33
PFDN5-212ENST00000550880 SHROOM4Q9ULL8 1493 aa23.14■■□□□ 1.29
PFDN5-212ENST00000550880 DCAF1Q9Y4B6 1507 aa23.08■■□□□ 1.28
PFDN5-212ENST00000550880 ZCCHC6Q5VYS8 1495 aaKnown RBP23.07■■□□□ 1.28
PFDN5-212ENST00000550880 CECR2Q9BXF3 1484 aa23.04■■□□□ 1.28
PFDN5-212ENST00000550880 CC2D2AQ9P2K1 1620 aa23■■□□□ 1.27
PFDN5-212ENST00000550880 SCRIBQ14160 1630 aa22.93■■□□□ 1.26
PFDN5-212ENST00000550880 EIF4G1Q04637 1599 aaKnown RBP22.89■■□□□ 1.25
PFDN5-212ENST00000550880 DNAJC5Q9H3Z4 198 aa22.48■■□□□ 1.19
PFDN5-212ENST00000550880 CUX2O14529 1486 aa22.14■■□□□ 1.13
PFDN5-212ENST00000550880 ERCC6Q03468 1493 aa22.12■■□□□ 1.13
PFDN5-212ENST00000550880 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
PFDN5-212ENST00000550880 ATAD2BQ9ULI0 1458 aa21.97■■□□□ 1.11
PFDN5-212ENST00000550880 SMARCA2P51531 1590 aa21.92■■□□□ 1.1
PFDN5-212ENST00000550880 HMGXB3Q12766 1538 aa21.87■■□□□ 1.09
PFDN5-212ENST00000550880 SMARCA4P51532 1647 aa21.84■■□□□ 1.09
PFDN5-212ENST00000550880 NESP48681 1621 aa21.79■■□□□ 1.08
PFDN5-212ENST00000550880 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.08
PFDN5-212ENST00000550880 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
PFDN5-212ENST00000550880 LAMC3Q9Y6N6 1575 aa21.64■■□□□ 1.05
PFDN5-212ENST00000550880 PEG3Q9GZU2 1588 aa21.62■■□□□ 1.05
PFDN5-212ENST00000550880 THOC2Q8NI27 1593 aaKnown RBP21.6■■□□□ 1.05
PFDN5-212ENST00000550880 PDS5BQ9NTI5 1447 aa21.59■■□□□ 1.05
PFDN5-212ENST00000550880 MROH2BQ7Z745 1585 aa21.51■■□□□ 1.03
PFDN5-212ENST00000550880 KIF21AQ7Z4S6 1674 aa21.47■■□□□ 1.03
PFDN5-212ENST00000550880 CADPSQ9ULU8 1353 aa21.44■■□□□ 1.02
PFDN5-212ENST00000550880 TRIM41Q8WV44 630 aa21.41■■□□□ 1.02
PFDN5-212ENST00000550880 MRC2Q9UBG0 1479 aa21.37■■□□□ 1.01
PFDN5-212ENST00000550880 WDR62O43379 1518 aa21.29■■□□□ 1
PFDN5-212ENST00000550880 CEP164Q9UPV0 1460 aa21.23■□□□□ 0.99
PFDN5-212ENST00000550880 WIZO95785 1651 aa21.21■□□□□ 0.99
PFDN5-212ENST00000550880 FANCD2Q9BXW9 1451 aa21.18■□□□□ 0.98
PFDN5-212ENST00000550880 OSCARQ8IYS5 282 aa21.15■□□□□ 0.98
PFDN5-212ENST00000550880 CFTRP13569 1480 aa21.1■□□□□ 0.97
PFDN5-212ENST00000550880 RSF1Q96T23 1441 aaPredicted RBP20.99■□□□□ 0.95
PFDN5-212ENST00000550880 URB2Q14146 1524 aaKnown RBP20.97■□□□□ 0.95
PFDN5-212ENST00000550880 TOP2AP11388 1531 aaKnown RBP20.96■□□□□ 0.95
PFDN5-212ENST00000550880 IFT140Q96RY7 1462 aa20.83■□□□□ 0.93
PFDN5-212ENST00000550880 PRDM2Q13029 1718 aa20.78■□□□□ 0.92
PFDN5-212ENST00000550880 RIMBP3CA6NJZ7 1639 aa20.77■□□□□ 0.92
PFDN5-212ENST00000550880 RIMBP3BA6NNM3 1639 aa20.77■□□□□ 0.92
PFDN5-212ENST00000550880 RIMBP3Q9UFD9 1639 aa20.77■□□□□ 0.92
PFDN5-212ENST00000550880 ZNF608Q9ULD9 1512 aaPredicted RBP20.76■□□□□ 0.91
PFDN5-212ENST00000550880 CCDC88BA6NC98 1476 aa20.75■□□□□ 0.91
PFDN5-212ENST00000550880 ABCC8Q09428 1581 aa20.72■□□□□ 0.91
PFDN5-212ENST00000550880 TOPBP1Q92547 1522 aa20.72■□□□□ 0.91
PFDN5-212ENST00000550880 ARHGEF11O15085 1522 aa20.71■□□□□ 0.91
PFDN5-212ENST00000550880 CYB5RLQ6IPT4 315 aa20.67■□□□□ 0.9
PFDN5-212ENST00000550880 EIF4G3O43432 1585 aaKnown RBP20.62■□□□□ 0.89
PFDN5-212ENST00000550880 DNMBPQ6XZF7 1577 aa20.61■□□□□ 0.89
PFDN5-212ENST00000550880 FBLN2P98095 1184 aa20.61■□□□□ 0.89
PFDN5-212ENST00000550880 AQRO60306 1485 aaKnown RBP eCLIP20.58■□□□□ 0.896e-7■■■■■ 32.7
PFDN5-212ENST00000550880 TRHP20396 242 aaPredicted RBP20.58■□□□□ 0.89
PFDN5-212ENST00000550880 TARBP1Q13395 1621 aaKnown RBP20.51■□□□□ 0.87
PFDN5-212ENST00000550880 CHD1O14646 1710 aa20.5■□□□□ 0.87
PFDN5-212ENST00000550880 POLA1P09884 1462 aaPredicted RBP20.49■□□□□ 0.87
PFDN5-212ENST00000550880 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
PFDN5-212ENST00000550880 SOGA1O94964 1423 aa20.44■□□□□ 0.86
PFDN5-212ENST00000550880 TDRD9Q8NDG6 1382 aaKnown RBP20.43■□□□□ 0.86
PFDN5-212ENST00000550880 RAD54L2Q9Y4B4 1467 aa20.42■□□□□ 0.86
PFDN5-212ENST00000550880 CHMP7Q8WUX9 453 aaPredicted RBP20.41■□□□□ 0.86
PFDN5-212ENST00000550880 SNAPC4Q5SXM2 1469 aa20.35■□□□□ 0.85
PFDN5-212ENST00000550880 WDR97A6NE52 1622 aa20.35■□□□□ 0.85
PFDN5-212ENST00000550880 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
PFDN5-212ENST00000550880 SYNJ1O43426 1573 aa20.31■□□□□ 0.84
PFDN5-212ENST00000550880 MAGI1Q96QZ7 1491 aaPredicted RBP20.3■□□□□ 0.84
PFDN5-212ENST00000550880 GRIN2BQ13224 1484 aa20.29■□□□□ 0.84
PFDN5-212ENST00000550880 CLASP1Q7Z460 1538 aa20.28■□□□□ 0.84
PFDN5-212ENST00000550880 SYNJ2O15056 1496 aa20.24■□□□□ 0.83
PFDN5-212ENST00000550880 AEBP2Q6ZN18 517 aaPredicted RBP20.23■□□□□ 0.83
PFDN5-212ENST00000550880 CUX1P39880 1505 aa20.22■□□□□ 0.83
PFDN5-212ENST00000550880 GAPVD1Q14C86 1478 aa20.18■□□□□ 0.82
PFDN5-212ENST00000550880 PBRM1Q86U86 1689 aa20.1■□□□□ 0.81
PFDN5-212ENST00000550880 ABCA10Q8WWZ4 1543 aa20.08■□□□□ 0.81
PFDN5-212ENST00000550880 ABCA5Q8WWZ7 1642 aa20.02■□□□□ 0.8
PFDN5-212ENST00000550880 GRIN2AQ12879 1464 aa20■□□□□ 0.79
PFDN5-212ENST00000550880 WRNQ14191 1432 aaPredicted RBP eCLIP20■□□□□ 0.793e-8■□□□□ 9.6
PFDN5-212ENST00000550880 NUP160Q12769 1436 aa19.93■□□□□ 0.78
PFDN5-212ENST00000550880 SUPT5HO00267 1087 aaKnown RBP19.93■□□□□ 0.78
PFDN5-212ENST00000550880 FHAD1B1AJZ9 1412 aa19.92■□□□□ 0.78
PFDN5-212ENST00000550880 CEP170Q5SW79 1584 aa19.91■□□□□ 0.78
PFDN5-212ENST00000550880 ERCC6L2Q5T890 1561 aa19.91■□□□□ 0.78
PFDN5-212ENST00000550880 ADAMTS12P58397 1594 aa19.91■□□□□ 0.78
PFDN5-212ENST00000550880 TOP2BQ02880 1626 aa19.84■□□□□ 0.77
PFDN5-212ENST00000550880 ERICH3Q5RHP9 1530 aa19.83■□□□□ 0.77
PFDN5-212ENST00000550880 SHROOM2Q13796 1616 aa19.83■□□□□ 0.76
PFDN5-212ENST00000550880 JPH4Q96JJ6 628 aa19.81■□□□□ 0.76
PFDN5-212ENST00000550880 PRG4Q92954 1404 aaPredicted RBP19.81■□□□□ 0.76
PFDN5-212ENST00000550880 BIVM-ERCC5R4GMW8 1640 aa19.8■□□□□ 0.76
PFDN5-212ENST00000550880 NPM1P06748 294 aaKnown RBP eCLIP19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms