RNA–Protein interactions for RNA: ENST00000550406.1

RAB5C-206, Transcript of RAB5C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB5C, Length 500 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-206ENST00000550406 NISCHQ9Y2I1 1504 aa31.28■■■□□ 2.6
RAB5C-206ENST00000550406 CCDC180Q9P1Z9 1646 aa27.66■■■□□ 2.02
RAB5C-206ENST00000550406 ABCC9O60706 1549 aa26.75■■□□□ 1.87
RAB5C-206ENST00000550406 ZCCHC6Q5VYS8 1495 aaKnown RBP26.11■■□□□ 1.77
RAB5C-206ENST00000550406 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
RAB5C-206ENST00000550406 NACADO15069 1562 aa25.9■■□□□ 1.74
RAB5C-206ENST00000550406 DCAF1Q9Y4B6 1507 aa25.87■■□□□ 1.73
RAB5C-206ENST00000550406 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
RAB5C-206ENST00000550406 MYO15BQ96JP2 1530 aa25.83■■□□□ 1.73
RAB5C-206ENST00000550406 UNC13AQ9UPW8 1703 aa25.41■■□□□ 1.66
RAB5C-206ENST00000550406 SCRIBQ14160 1630 aa25.26■■□□□ 1.63
RAB5C-206ENST00000550406 BICRAQ9NZM4 1560 aa25.14■■□□□ 1.62
RAB5C-206ENST00000550406 PABPN1Q86U42 306 aaKnown RBP eCLIP25.06■■□□□ 1.6
RAB5C-206ENST00000550406 SHROOM4Q9ULL8 1493 aa24.9■■□□□ 1.58
RAB5C-206ENST00000550406 EIF4G1Q04637 1599 aaKnown RBP24.39■■□□□ 1.5
RAB5C-206ENST00000550406 CECR2Q9BXF3 1484 aa24.37■■□□□ 1.49
RAB5C-206ENST00000550406 DNAJC5BQ9UF47 199 aa24.34■■□□□ 1.49
RAB5C-206ENST00000550406 CC2D2AQ9P2K1 1620 aa24.24■■□□□ 1.47
RAB5C-206ENST00000550406 SMARCA4P51532 1647 aa24.21■■□□□ 1.47
RAB5C-206ENST00000550406 BAZ1AQ9NRL2 1556 aaPredicted RBP24.17■■□□□ 1.46
RAB5C-206ENST00000550406 MROH2BQ7Z745 1585 aa24.13■■□□□ 1.45
RAB5C-206ENST00000550406 ATAD2BQ9ULI0 1458 aa23.98■■□□□ 1.43
RAB5C-206ENST00000550406 PEG3Q9GZU2 1588 aa23.96■■□□□ 1.43
RAB5C-206ENST00000550406 RSF1Q96T23 1441 aaPredicted RBP23.95■■□□□ 1.42
RAB5C-206ENST00000550406 WIZO95785 1651 aa23.92■■□□□ 1.42
RAB5C-206ENST00000550406 SMARCA2P51531 1590 aa23.92■■□□□ 1.42
RAB5C-206ENST00000550406 NCAPD3P42695 1498 aa23.91■■□□□ 1.42
RAB5C-206ENST00000550406 HMGXB3Q12766 1538 aa23.8■■□□□ 1.4
RAB5C-206ENST00000550406 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
RAB5C-206ENST00000550406 TOP2AP11388 1531 aaKnown RBP23.62■■□□□ 1.37
RAB5C-206ENST00000550406 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
RAB5C-206ENST00000550406 CCDC88BA6NC98 1476 aa23.37■■□□□ 1.33
RAB5C-206ENST00000550406 NESP48681 1621 aa23.28■■□□□ 1.32
RAB5C-206ENST00000550406 CADPSQ9ULU8 1353 aa23.21■■□□□ 1.31
RAB5C-206ENST00000550406 LAMC3Q9Y6N6 1575 aa23.21■■□□□ 1.31
RAB5C-206ENST00000550406 CFTRP13569 1480 aa23.16■■□□□ 1.3
RAB5C-206ENST00000550406 PRDM2Q13029 1718 aa23.08■■□□□ 1.28
RAB5C-206ENST00000550406 KIF21AQ7Z4S6 1674 aa23.04■■□□□ 1.28
RAB5C-206ENST00000550406 PDS5BQ9NTI5 1447 aa23■■□□□ 1.27
RAB5C-206ENST00000550406 ERCC6Q03468 1493 aa22.95■■□□□ 1.26
RAB5C-206ENST00000550406 FANCD2Q9BXW9 1451 aa22.95■■□□□ 1.26
RAB5C-206ENST00000550406 CEP164Q9UPV0 1460 aa22.86■■□□□ 1.25
RAB5C-206ENST00000550406 THOC2Q8NI27 1593 aaKnown RBP22.84■■□□□ 1.25
RAB5C-206ENST00000550406 MRC2Q9UBG0 1479 aa22.78■■□□□ 1.24
RAB5C-206ENST00000550406 URB2Q14146 1524 aaKnown RBP22.74■■□□□ 1.23
RAB5C-206ENST00000550406 WDR62O43379 1518 aa22.72■■□□□ 1.23
RAB5C-206ENST00000550406 TOPBP1Q92547 1522 aa22.64■■□□□ 1.21
RAB5C-206ENST00000550406 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
RAB5C-206ENST00000550406 ABCC8Q09428 1581 aa22.63■■□□□ 1.21
RAB5C-206ENST00000550406 CUX1P39880 1505 aa22.62■■□□□ 1.21
RAB5C-206ENST00000550406 CUX2O14529 1486 aa22.61■■□□□ 1.21
RAB5C-206ENST00000550406 WRNQ14191 1432 aaPredicted RBP eCLIP22.53■■□□□ 1.2
RAB5C-206ENST00000550406 SYNJ1O43426 1573 aa22.53■■□□□ 1.2
RAB5C-206ENST00000550406 BIVM-ERCC5R4GMW8 1640 aa22.5■■□□□ 1.19
RAB5C-206ENST00000550406 TOP2BQ02880 1626 aa22.49■■□□□ 1.19
RAB5C-206ENST00000550406 POLA1P09884 1462 aaPredicted RBP22.46■■□□□ 1.19
RAB5C-206ENST00000550406 FGD5Q6ZNL6 1462 aa22.46■■□□□ 1.19
RAB5C-206ENST00000550406 TARBP1Q13395 1621 aaKnown RBP22.4■■□□□ 1.18
RAB5C-206ENST00000550406 RAD54L2Q9Y4B4 1467 aa22.4■■□□□ 1.18
RAB5C-206ENST00000550406 IFT140Q96RY7 1462 aa22.37■■□□□ 1.17
RAB5C-206ENST00000550406 SOGA1O94964 1423 aa22.36■■□□□ 1.17
RAB5C-206ENST00000550406 WDR97A6NE52 1622 aa22.31■■□□□ 1.16
RAB5C-206ENST00000550406 ZNF608Q9ULD9 1512 aaPredicted RBP22.31■■□□□ 1.16
RAB5C-206ENST00000550406 ABCA10Q8WWZ4 1543 aa22.25■■□□□ 1.15
RAB5C-206ENST00000550406 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
RAB5C-206ENST00000550406 DNAJC5Q9H3Z4 198 aa22.23■■□□□ 1.15
RAB5C-206ENST00000550406 AQRO60306 1485 aaKnown RBP eCLIP22.22■■□□□ 1.154e-6■■■■■ 31
RAB5C-206ENST00000550406 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
RAB5C-206ENST00000550406 TRIM41Q8WV44 630 aa22.21■■□□□ 1.15
RAB5C-206ENST00000550406 TDRD9Q8NDG6 1382 aaKnown RBP22.21■■□□□ 1.15
RAB5C-206ENST00000550406 ABCA5Q8WWZ7 1642 aa22.16■■□□□ 1.14
RAB5C-206ENST00000550406 GAPVD1Q14C86 1478 aa22.11■■□□□ 1.13
RAB5C-206ENST00000550406 PBRM1Q86U86 1689 aa22.11■■□□□ 1.13
RAB5C-206ENST00000550406 GRIN2BQ13224 1484 aa22.04■■□□□ 1.12
RAB5C-206ENST00000550406 RUSC2Q8N2Y8 1516 aa22.04■■□□□ 1.12
RAB5C-206ENST00000550406 KIF27Q86VH2 1401 aa22.01■■□□□ 1.11
RAB5C-206ENST00000550406 SNAPC4Q5SXM2 1469 aa21.99■■□□□ 1.11
RAB5C-206ENST00000550406 ERICH3Q5RHP9 1530 aa21.97■■□□□ 1.11
RAB5C-206ENST00000550406 IGF1RP08069 1367 aa21.95■■□□□ 1.1
RAB5C-206ENST00000550406 MAGI1Q96QZ7 1491 aaPredicted RBP21.94■■□□□ 1.1
RAB5C-206ENST00000550406 CHD1O14646 1710 aa21.93■■□□□ 1.1
RAB5C-206ENST00000550406 ADAMTS12P58397 1594 aa21.91■■□□□ 1.1
RAB5C-206ENST00000550406 SYNJ2O15056 1496 aa21.86■■□□□ 1.09
RAB5C-206ENST00000550406 CUL7Q14999 1698 aa21.85■■□□□ 1.09
RAB5C-206ENST00000550406 FHAD1B1AJZ9 1412 aa21.84■■□□□ 1.09
RAB5C-206ENST00000550406 FBLN2P98095 1184 aa21.81■■□□□ 1.08
RAB5C-206ENST00000550406 CARMIL1Q5VZK9 1371 aa21.8■■□□□ 1.08
RAB5C-206ENST00000550406 CHMP7Q8WUX9 453 aaPredicted RBP21.8■■□□□ 1.08
RAB5C-206ENST00000550406 EEA1Q15075 1411 aa21.79■■□□□ 1.08
RAB5C-206ENST00000550406 FAM9AQ8IZU1 332 aaPredicted RBP21.78■■□□□ 1.08
RAB5C-206ENST00000550406 GRIN2AQ12879 1464 aa21.77■■□□□ 1.08
RAB5C-206ENST00000550406 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
RAB5C-206ENST00000550406 OSCARQ8IYS5 282 aa21.74■■□□□ 1.07
RAB5C-206ENST00000550406 PRXQ9BXM0 1461 aa21.73■■□□□ 1.07
RAB5C-206ENST00000550406 RAPGEF2Q9Y4G8 1499 aa21.7■■□□□ 1.06
RAB5C-206ENST00000550406 CEP170Q5SW79 1584 aa21.7■■□□□ 1.06
RAB5C-206ENST00000550406 NUP160Q12769 1436 aa21.68■■□□□ 1.06
RAB5C-206ENST00000550406 CLASP1Q7Z460 1538 aa21.65■■□□□ 1.06
RAB5C-206ENST00000550406 KIF21BO75037 1637 aa21.61■■□□□ 1.05
RAB5C-206ENST00000550406 KIAA0586Q9BVV6 1533 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms