RNA–Protein interactions for RNA: ENST00000550102.5

CHMP1A-208, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 5 BASIC

Gene CHMP1A, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-208ENST00000550102 NISCHQ9Y2I1 1504 aa42.3■■■■■ 4.36
CHMP1A-208ENST00000550102 CCDC180Q9P1Z9 1646 aa37.86■■■■□ 3.65
CHMP1A-208ENST00000550102 ABCC9O60706 1549 aa37.02■■■■□ 3.52
CHMP1A-208ENST00000550102 RB1CC1Q8TDY2 1594 aa35.64■■■■□ 3.3
CHMP1A-208ENST00000550102 NACADO15069 1562 aa35.53■■■■□ 3.28
CHMP1A-208ENST00000550102 MYO15BQ96JP2 1530 aa35.26■■■■□ 3.23
CHMP1A-208ENST00000550102 ZCCHC6Q5VYS8 1495 aaKnown RBP35.25■■■■□ 3.23
CHMP1A-208ENST00000550102 DCAF8L2P0C7V8 631 aa35.23■■■■□ 3.23
CHMP1A-208ENST00000550102 DCAF1Q9Y4B6 1507 aa35.05■■■■□ 3.2
CHMP1A-208ENST00000550102 UNC13AQ9UPW8 1703 aa34.92■■■■□ 3.18
CHMP1A-208ENST00000550102 BICRAQ9NZM4 1560 aa34.53■■■■□ 3.12
CHMP1A-208ENST00000550102 PABPN1Q86U42 306 aaKnown RBP eCLIP34.45■■■■□ 3.11
CHMP1A-208ENST00000550102 SCRIBQ14160 1630 aa34.44■■■■□ 3.1
CHMP1A-208ENST00000550102 SHROOM4Q9ULL8 1493 aa34.21■■■■□ 3.07
CHMP1A-208ENST00000550102 DNAJC5BQ9UF47 199 aa33.97■■■■□ 3.03
CHMP1A-208ENST00000550102 EIF4G1Q04637 1599 aaKnown RBP33.64■■■□□ 2.98
CHMP1A-208ENST00000550102 CC2D2AQ9P2K1 1620 aa33.55■■■□□ 2.96
CHMP1A-208ENST00000550102 CECR2Q9BXF3 1484 aa33.29■■■□□ 2.92
CHMP1A-208ENST00000550102 SMARCA4P51532 1647 aa32.94■■■□□ 2.86
CHMP1A-208ENST00000550102 BAZ1AQ9NRL2 1556 aaPredicted RBP32.86■■■□□ 2.85
CHMP1A-208ENST00000550102 SMARCA2P51531 1590 aa32.74■■■□□ 2.83
CHMP1A-208ENST00000550102 ATAD2BQ9ULI0 1458 aa32.71■■■□□ 2.83
CHMP1A-208ENST00000550102 NCAPD3P42695 1498 aa32.7■■■□□ 2.83
CHMP1A-208ENST00000550102 HMGXB3Q12766 1538 aa32.64■■■□□ 2.82
CHMP1A-208ENST00000550102 PEG3Q9GZU2 1588 aa32.61■■■□□ 2.81
CHMP1A-208ENST00000550102 MROH2BQ7Z745 1585 aa32.59■■■□□ 2.81
CHMP1A-208ENST00000550102 BAZ1BQ9UIG0 1483 aaKnown RBP32.48■■■□□ 2.79
CHMP1A-208ENST00000550102 WIZO95785 1651 aa32.29■■■□□ 2.76
CHMP1A-208ENST00000550102 RSF1Q96T23 1441 aaPredicted RBP32.11■■■□□ 2.73
CHMP1A-208ENST00000550102 NESP48681 1621 aa31.98■■■□□ 2.71
CHMP1A-208ENST00000550102 LAMC3Q9Y6N6 1575 aa31.97■■■□□ 2.71
CHMP1A-208ENST00000550102 ERCC6Q03468 1493 aa31.97■■■□□ 2.71
CHMP1A-208ENST00000550102 TOP2AP11388 1531 aaKnown RBP31.95■■■□□ 2.7
CHMP1A-208ENST00000550102 KIF21AQ7Z4S6 1674 aa31.74■■■□□ 2.67
CHMP1A-208ENST00000550102 CADPSQ9ULU8 1353 aa31.71■■■□□ 2.67
CHMP1A-208ENST00000550102 CUX2O14529 1486 aa31.71■■■□□ 2.67
CHMP1A-208ENST00000550102 PDS5BQ9NTI5 1447 aa31.67■■■□□ 2.66
CHMP1A-208ENST00000550102 THOC2Q8NI27 1593 aaKnown RBP31.66■■■□□ 2.66
CHMP1A-208ENST00000550102 CFTRP13569 1480 aa31.53■■■□□ 2.64
CHMP1A-208ENST00000550102 PRDM2Q13029 1718 aa31.52■■■□□ 2.64
CHMP1A-208ENST00000550102 CCDC88BA6NC98 1476 aa31.47■■■□□ 2.63
CHMP1A-208ENST00000550102 CEP164Q9UPV0 1460 aa31.43■■■□□ 2.62
CHMP1A-208ENST00000550102 FANCD2Q9BXW9 1451 aa31.41■■■□□ 2.62
CHMP1A-208ENST00000550102 MRC2Q9UBG0 1479 aa31.4■■■□□ 2.62
CHMP1A-208ENST00000550102 WDR62O43379 1518 aa31.34■■■□□ 2.61
CHMP1A-208ENST00000550102 URB2Q14146 1524 aaKnown RBP31.12■■■□□ 2.57
CHMP1A-208ENST00000550102 SUPT5HO00267 1087 aaKnown RBP31.08■■■□□ 2.57
CHMP1A-208ENST00000550102 DNAJC5Q9H3Z4 198 aa30.96■■■□□ 2.55
CHMP1A-208ENST00000550102 DNMBPQ6XZF7 1577 aa30.91■■■□□ 2.54
CHMP1A-208ENST00000550102 TOPBP1Q92547 1522 aa30.9■■■□□ 2.54
CHMP1A-208ENST00000550102 ABCC8Q09428 1581 aa30.89■■■□□ 2.54
CHMP1A-208ENST00000550102 IFT140Q96RY7 1462 aa30.75■■■□□ 2.51
CHMP1A-208ENST00000550102 TARBP1Q13395 1621 aaKnown RBP30.63■■■□□ 2.49
CHMP1A-208ENST00000550102 POLA1P09884 1462 aaPredicted RBP30.62■■■□□ 2.49
CHMP1A-208ENST00000550102 CUX1P39880 1505 aa30.62■■■□□ 2.49
CHMP1A-208ENST00000550102 EIF4G3O43432 1585 aaKnown RBP30.59■■■□□ 2.49
CHMP1A-208ENST00000550102 ZNF608Q9ULD9 1512 aaPredicted RBP30.59■■■□□ 2.49
CHMP1A-208ENST00000550102 FGD5Q6ZNL6 1462 aa30.53■■■□□ 2.48
CHMP1A-208ENST00000550102 RAD54L2Q9Y4B4 1467 aa30.44■■■□□ 2.46
CHMP1A-208ENST00000550102 WDR97A6NE52 1622 aa30.44■■■□□ 2.46
CHMP1A-208ENST00000550102 SOGA1O94964 1423 aa30.43■■■□□ 2.46
CHMP1A-208ENST00000550102 BIVM-ERCC5R4GMW8 1640 aa30.39■■■□□ 2.46
CHMP1A-208ENST00000550102 AQRO60306 1485 aaKnown RBP eCLIP30.36■■■□□ 2.457e-7■■■■■ 29
CHMP1A-208ENST00000550102 TOP2BQ02880 1626 aa30.35■■■□□ 2.45
CHMP1A-208ENST00000550102 SYNJ1O43426 1573 aa30.32■■■□□ 2.45
CHMP1A-208ENST00000550102 WRNQ14191 1432 aaPredicted RBP eCLIP30.31■■■□□ 2.44
CHMP1A-208ENST00000550102 CHD1O14646 1710 aa30.27■■■□□ 2.44
CHMP1A-208ENST00000550102 TDRD9Q8NDG6 1382 aaKnown RBP30.26■■■□□ 2.43
CHMP1A-208ENST00000550102 PBRM1Q86U86 1689 aa30.23■■■□□ 2.43
CHMP1A-208ENST00000550102 ABCA10Q8WWZ4 1543 aa30.22■■■□□ 2.43
CHMP1A-208ENST00000550102 OSCARQ8IYS5 282 aa30.21■■■□□ 2.43
CHMP1A-208ENST00000550102 ABCA5Q8WWZ7 1642 aa30.2■■■□□ 2.43
CHMP1A-208ENST00000550102 GRIN2BQ13224 1484 aa30.16■■■□□ 2.42
CHMP1A-208ENST00000550102 SNAPC4Q5SXM2 1469 aa30.15■■■□□ 2.42
CHMP1A-208ENST00000550102 MAGI1Q96QZ7 1491 aaPredicted RBP30.13■■■□□ 2.41
CHMP1A-208ENST00000550102 GAPVD1Q14C86 1478 aa30.12■■■□□ 2.41
CHMP1A-208ENST00000550102 SYNJ2O15056 1496 aa29.99■■■□□ 2.39
CHMP1A-208ENST00000550102 FBLN2P98095 1184 aa29.98■■■□□ 2.39
CHMP1A-208ENST00000550102 ADAMTS12P58397 1594 aa29.93■■■□□ 2.38
CHMP1A-208ENST00000550102 RIMBP3CA6NJZ7 1639 aa29.93■■■□□ 2.38
CHMP1A-208ENST00000550102 RIMBP3BA6NNM3 1639 aa29.93■■■□□ 2.38
CHMP1A-208ENST00000550102 RIMBP3Q9UFD9 1639 aa29.93■■■□□ 2.38
CHMP1A-208ENST00000550102 ERICH3Q5RHP9 1530 aa29.9■■■□□ 2.38
CHMP1A-208ENST00000550102 CHMP7Q8WUX9 453 aaPredicted RBP29.88■■■□□ 2.37
CHMP1A-208ENST00000550102 CLASP1Q7Z460 1538 aa29.87■■■□□ 2.37
CHMP1A-208ENST00000550102 ARHGEF11O15085 1522 aa29.86■■■□□ 2.37
CHMP1A-208ENST00000550102 GRIN2AQ12879 1464 aa29.79■■■□□ 2.36
CHMP1A-208ENST00000550102 FHAD1B1AJZ9 1412 aa29.77■■■□□ 2.36
CHMP1A-208ENST00000550102 TRIM41Q8WV44 630 aa29.76■■■□□ 2.35
CHMP1A-208ENST00000550102 KIF27Q86VH2 1401 aa29.7■■■□□ 2.34
CHMP1A-208ENST00000550102 CEP170Q5SW79 1584 aa29.68■■■□□ 2.34
CHMP1A-208ENST00000550102 CUL7Q14999 1698 aa29.67■■■□□ 2.34
CHMP1A-208ENST00000550102 NUP160Q12769 1436 aa29.64■■■□□ 2.34
CHMP1A-208ENST00000550102 ARAP1Q96P48 1450 aa29.6■■■□□ 2.33
CHMP1A-208ENST00000550102 SHROOM2Q13796 1616 aa29.53■■■□□ 2.32
CHMP1A-208ENST00000550102 IGF1RP08069 1367 aa29.52■■■□□ 2.32
CHMP1A-208ENST00000550102 RUSC2Q8N2Y8 1516 aa29.5■■■□□ 2.31
CHMP1A-208ENST00000550102 CYB5RLQ6IPT4 315 aa29.44■■■□□ 2.3
CHMP1A-208ENST00000550102 ERCC6L2Q5T890 1561 aa29.39■■■□□ 2.3
CHMP1A-208ENST00000550102 CARMIL1Q5VZK9 1371 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms