RNA–Protein interactions for RNA: ENST00000550013.1

RAB5C-205, Transcript of RAB5C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB5C, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-205ENST00000550013 NISCHQ9Y2I1 1504 aa38.9■■■■□ 3.82
RAB5C-205ENST00000550013 ABCC9O60706 1549 aa35.08■■■■□ 3.21
RAB5C-205ENST00000550013 CCDC180Q9P1Z9 1646 aa34.95■■■■□ 3.19
RAB5C-205ENST00000550013 RB1CC1Q8TDY2 1594 aa33.31■■■□□ 2.92
RAB5C-205ENST00000550013 NACADO15069 1562 aa33.04■■■□□ 2.88
RAB5C-205ENST00000550013 DNAJC5BQ9UF47 199 aa33.01■■■□□ 2.87
RAB5C-205ENST00000550013 DCAF8L2P0C7V8 631 aa32.88■■■□□ 2.85
RAB5C-205ENST00000550013 PABPN1Q86U42 306 aaKnown RBP eCLIP32.65■■■□□ 2.82
RAB5C-205ENST00000550013 UNC13AQ9UPW8 1703 aa32.64■■■□□ 2.82
RAB5C-205ENST00000550013 MYO15BQ96JP2 1530 aa32.52■■■□□ 2.8
RAB5C-205ENST00000550013 BICRAQ9NZM4 1560 aa32.39■■■□□ 2.78
RAB5C-205ENST00000550013 ZCCHC6Q5VYS8 1495 aaKnown RBP32.22■■■□□ 2.75
RAB5C-205ENST00000550013 DCAF1Q9Y4B6 1507 aa32.09■■■□□ 2.73
RAB5C-205ENST00000550013 SCRIBQ14160 1630 aa31.89■■■□□ 2.7
RAB5C-205ENST00000550013 SHROOM4Q9ULL8 1493 aa31.86■■■□□ 2.69
RAB5C-205ENST00000550013 CC2D2AQ9P2K1 1620 aa31.69■■■□□ 2.66
RAB5C-205ENST00000550013 CECR2Q9BXF3 1484 aa31.59■■■□□ 2.65
RAB5C-205ENST00000550013 EIF4G1Q04637 1599 aaKnown RBP31.58■■■□□ 2.65
RAB5C-205ENST00000550013 NCAPD3P42695 1498 aa30.5■■■□□ 2.47
RAB5C-205ENST00000550013 ATAD2BQ9ULI0 1458 aa30.43■■■□□ 2.46
RAB5C-205ENST00000550013 SMARCA4P51532 1647 aa30.39■■■□□ 2.46
RAB5C-205ENST00000550013 DNAJC5Q9H3Z4 198 aa30.34■■■□□ 2.45
RAB5C-205ENST00000550013 SMARCA2P51531 1590 aa30.32■■■□□ 2.44
RAB5C-205ENST00000550013 HMGXB3Q12766 1538 aa30.28■■■□□ 2.44
RAB5C-205ENST00000550013 ERCC6Q03468 1493 aa30.27■■■□□ 2.44
RAB5C-205ENST00000550013 CUX2O14529 1486 aa30.24■■■□□ 2.43
RAB5C-205ENST00000550013 BAZ1AQ9NRL2 1556 aaPredicted RBP30.19■■■□□ 2.42
RAB5C-205ENST00000550013 NESP48681 1621 aa30.13■■■□□ 2.41
RAB5C-205ENST00000550013 BAZ1BQ9UIG0 1483 aaKnown RBP30.12■■■□□ 2.41
RAB5C-205ENST00000550013 PEG3Q9GZU2 1588 aa30.06■■■□□ 2.4
RAB5C-205ENST00000550013 MROH2BQ7Z745 1585 aa30■■■□□ 2.39
RAB5C-205ENST00000550013 LAMC3Q9Y6N6 1575 aa29.85■■■□□ 2.37
RAB5C-205ENST00000550013 THOC2Q8NI27 1593 aaKnown RBP29.83■■■□□ 2.37
RAB5C-205ENST00000550013 KIF21AQ7Z4S6 1674 aa29.75■■■□□ 2.35
RAB5C-205ENST00000550013 PDS5BQ9NTI5 1447 aa29.66■■■□□ 2.34
RAB5C-205ENST00000550013 WIZO95785 1651 aa29.65■■■□□ 2.34
RAB5C-205ENST00000550013 CADPSQ9ULU8 1353 aa29.58■■■□□ 2.33
RAB5C-205ENST00000550013 MRC2Q9UBG0 1479 aa29.44■■■□□ 2.3
RAB5C-205ENST00000550013 WDR62O43379 1518 aa29.37■■■□□ 2.29
RAB5C-205ENST00000550013 RSF1Q96T23 1441 aaPredicted RBP29.32■■■□□ 2.28
RAB5C-205ENST00000550013 CEP164Q9UPV0 1460 aa29.3■■■□□ 2.28
RAB5C-205ENST00000550013 FANCD2Q9BXW9 1451 aa29.27■■■□□ 2.28
RAB5C-205ENST00000550013 TOP2AP11388 1531 aaKnown RBP29.23■■■□□ 2.27
RAB5C-205ENST00000550013 CFTRP13569 1480 aa29.23■■■□□ 2.27
RAB5C-205ENST00000550013 URB2Q14146 1524 aaKnown RBP29.05■■■□□ 2.24
RAB5C-205ENST00000550013 TRIM41Q8WV44 630 aa29.01■■■□□ 2.23
RAB5C-205ENST00000550013 PRDM2Q13029 1718 aa28.97■■■□□ 2.23
RAB5C-205ENST00000550013 CCDC88BA6NC98 1476 aa28.91■■■□□ 2.22
RAB5C-205ENST00000550013 OSCARQ8IYS5 282 aa28.82■■■□□ 2.2
RAB5C-205ENST00000550013 ZNF608Q9ULD9 1512 aaPredicted RBP28.72■■■□□ 2.19
RAB5C-205ENST00000550013 TOPBP1Q92547 1522 aa28.71■■■□□ 2.19
RAB5C-205ENST00000550013 IFT140Q96RY7 1462 aa28.71■■■□□ 2.19
RAB5C-205ENST00000550013 DNMBPQ6XZF7 1577 aa28.59■■■□□ 2.17
RAB5C-205ENST00000550013 ABCC8Q09428 1581 aa28.58■■■□□ 2.17
RAB5C-205ENST00000550013 EIF4G3O43432 1585 aaKnown RBP28.55■■■□□ 2.16
RAB5C-205ENST00000550013 RIMBP3CA6NJZ7 1639 aa28.53■■■□□ 2.16
RAB5C-205ENST00000550013 RIMBP3BA6NNM3 1639 aa28.53■■■□□ 2.16
RAB5C-205ENST00000550013 RIMBP3Q9UFD9 1639 aa28.53■■■□□ 2.16
RAB5C-205ENST00000550013 TARBP1Q13395 1621 aaKnown RBP28.47■■■□□ 2.15
RAB5C-205ENST00000550013 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.144e-6■■■■■ 31
RAB5C-205ENST00000550013 ARHGEF11O15085 1522 aa28.41■■■□□ 2.14
RAB5C-205ENST00000550013 POLA1P09884 1462 aaPredicted RBP28.4■■■□□ 2.14
RAB5C-205ENST00000550013 CHD1O14646 1710 aa28.39■■■□□ 2.14
RAB5C-205ENST00000550013 RAD54L2Q9Y4B4 1467 aa28.33■■■□□ 2.13
RAB5C-205ENST00000550013 SOGA1O94964 1423 aa28.26■■■□□ 2.11
RAB5C-205ENST00000550013 FBLN2P98095 1184 aa28.25■■■□□ 2.11
RAB5C-205ENST00000550013 TDRD9Q8NDG6 1382 aaKnown RBP28.24■■■□□ 2.11
RAB5C-205ENST00000550013 FGD5Q6ZNL6 1462 aa28.21■■■□□ 2.11
RAB5C-205ENST00000550013 CUX1P39880 1505 aa28.19■■■□□ 2.1
RAB5C-205ENST00000550013 CYB5RLQ6IPT4 315 aa28.19■■■□□ 2.1
RAB5C-205ENST00000550013 SNAPC4Q5SXM2 1469 aa28.15■■■□□ 2.1
RAB5C-205ENST00000550013 ARAP1Q96P48 1450 aa28.14■■■□□ 2.09
RAB5C-205ENST00000550013 WDR97A6NE52 1622 aa28.12■■■□□ 2.09
RAB5C-205ENST00000550013 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
RAB5C-205ENST00000550013 GRIN2BQ13224 1484 aa28.02■■■□□ 2.08
RAB5C-205ENST00000550013 MAGI1Q96QZ7 1491 aaPredicted RBP28.02■■■□□ 2.08
RAB5C-205ENST00000550013 CHMP7Q8WUX9 453 aaPredicted RBP28■■■□□ 2.07
RAB5C-205ENST00000550013 SYNJ1O43426 1573 aa27.98■■■□□ 2.07
RAB5C-205ENST00000550013 PBRM1Q86U86 1689 aa27.96■■■□□ 2.07
RAB5C-205ENST00000550013 SUPT5HO00267 1087 aaKnown RBP27.95■■■□□ 2.06
RAB5C-205ENST00000550013 SYNJ2O15056 1496 aa27.94■■■□□ 2.06
RAB5C-205ENST00000550013 GAPVD1Q14C86 1478 aa27.92■■■□□ 2.06
RAB5C-205ENST00000550013 TRHP20396 242 aaPredicted RBP27.9■■■□□ 2.06
RAB5C-205ENST00000550013 ABCA10Q8WWZ4 1543 aa27.87■■■□□ 2.05
RAB5C-205ENST00000550013 ABCA5Q8WWZ7 1642 aa27.87■■■□□ 2.05
RAB5C-205ENST00000550013 WRNQ14191 1432 aaPredicted RBP eCLIP27.73■■■□□ 2.03
RAB5C-205ENST00000550013 BIVM-ERCC5R4GMW8 1640 aa27.7■■■□□ 2.03
RAB5C-205ENST00000550013 TOP2BQ02880 1626 aa27.69■■■□□ 2.02
RAB5C-205ENST00000550013 GRIN2AQ12879 1464 aa27.67■■■□□ 2.02
RAB5C-205ENST00000550013 ADAMTS12P58397 1594 aa27.67■■■□□ 2.02
RAB5C-205ENST00000550013 ERCC6L2Q5T890 1561 aa27.62■■■□□ 2.01
RAB5C-205ENST00000550013 CEP170Q5SW79 1584 aa27.6■■■□□ 2.01
RAB5C-205ENST00000550013 NUP160Q12769 1436 aa27.58■■■□□ 2
RAB5C-205ENST00000550013 FHAD1B1AJZ9 1412 aa27.55■■■□□ 2
RAB5C-205ENST00000550013 ERICH3Q5RHP9 1530 aa27.51■■■□□ 2
RAB5C-205ENST00000550013 SHROOM2Q13796 1616 aa27.49■■□□□ 1.99
RAB5C-205ENST00000550013 PRG4Q92954 1404 aaPredicted RBP27.33■■□□□ 1.96
RAB5C-205ENST00000550013 RUSC2Q8N2Y8 1516 aa27.28■■□□□ 1.96
RAB5C-205ENST00000550013 JPH4Q96JJ6 628 aa27.28■■□□□ 1.96
RAB5C-205ENST00000550013 KIF13AQ9H1H9 1805 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms