RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 NISCHQ9Y2I1 1504 aa46.07■■■■■ 4.97
CHMP1A-207ENST00000549328 CCDC180Q9P1Z9 1646 aa41.14■■■■■ 4.18
CHMP1A-207ENST00000549328 ABCC9O60706 1549 aa40.7■■■■■ 4.11
CHMP1A-207ENST00000549328 RB1CC1Q8TDY2 1594 aa38.97■■■■□ 3.83
CHMP1A-207ENST00000549328 NACADO15069 1562 aa38.83■■■■□ 3.81
CHMP1A-207ENST00000549328 DCAF8L2P0C7V8 631 aa38.68■■■■□ 3.78
CHMP1A-207ENST00000549328 MYO15BQ96JP2 1530 aa38.48■■■■□ 3.75
CHMP1A-207ENST00000549328 ZCCHC6Q5VYS8 1495 aaKnown RBP38.25■■■■□ 3.71
CHMP1A-207ENST00000549328 DCAF1Q9Y4B6 1507 aa38.12■■■■□ 3.69
CHMP1A-207ENST00000549328 UNC13AQ9UPW8 1703 aa38.01■■■■□ 3.68
CHMP1A-207ENST00000549328 PABPN1Q86U42 306 aaKnown RBP eCLIP37.97■■■■□ 3.67
CHMP1A-207ENST00000549328 DNAJC5BQ9UF47 199 aa37.84■■■■□ 3.65
CHMP1A-207ENST00000549328 BICRAQ9NZM4 1560 aa37.79■■■■□ 3.64
CHMP1A-207ENST00000549328 SCRIBQ14160 1630 aa37.44■■■■□ 3.58
CHMP1A-207ENST00000549328 SHROOM4Q9ULL8 1493 aa37.42■■■■□ 3.58
CHMP1A-207ENST00000549328 EIF4G1Q04637 1599 aaKnown RBP36.83■■■■□ 3.49
CHMP1A-207ENST00000549328 CC2D2AQ9P2K1 1620 aa36.8■■■■□ 3.48
CHMP1A-207ENST00000549328 CECR2Q9BXF3 1484 aa36.65■■■■□ 3.46
CHMP1A-207ENST00000549328 NCAPD3P42695 1498 aa35.86■■■■□ 3.33
CHMP1A-207ENST00000549328 SMARCA4P51532 1647 aa35.81■■■■□ 3.32
CHMP1A-207ENST00000549328 ATAD2BQ9ULI0 1458 aa35.78■■■■□ 3.32
CHMP1A-207ENST00000549328 BAZ1AQ9NRL2 1556 aaPredicted RBP35.74■■■■□ 3.31
CHMP1A-207ENST00000549328 SMARCA2P51531 1590 aa35.72■■■■□ 3.31
CHMP1A-207ENST00000549328 HMGXB3Q12766 1538 aa35.6■■■■□ 3.29
CHMP1A-207ENST00000549328 PEG3Q9GZU2 1588 aa35.51■■■■□ 3.28
CHMP1A-207ENST00000549328 MROH2BQ7Z745 1585 aa35.47■■■■□ 3.27
CHMP1A-207ENST00000549328 BAZ1BQ9UIG0 1483 aaKnown RBP35.44■■■■□ 3.26
CHMP1A-207ENST00000549328 ERCC6Q03468 1493 aa35.13■■■■□ 3.21
CHMP1A-207ENST00000549328 NESP48681 1621 aa35.07■■■■□ 3.21
CHMP1A-207ENST00000549328 WIZO95785 1651 aa35.03■■■■□ 3.2
CHMP1A-207ENST00000549328 CUX2O14529 1486 aa34.97■■■■□ 3.19
CHMP1A-207ENST00000549328 LAMC3Q9Y6N6 1575 aa34.96■■■■□ 3.19
CHMP1A-207ENST00000549328 RSF1Q96T23 1441 aaPredicted RBP34.92■■■■□ 3.18
CHMP1A-207ENST00000549328 CADPSQ9ULU8 1353 aa34.78■■■■□ 3.16
CHMP1A-207ENST00000549328 PDS5BQ9NTI5 1447 aa34.77■■■■□ 3.16
CHMP1A-207ENST00000549328 TOP2AP11388 1531 aaKnown RBP34.66■■■■□ 3.14
CHMP1A-207ENST00000549328 THOC2Q8NI27 1593 aaKnown RBP34.63■■■■□ 3.13
CHMP1A-207ENST00000549328 KIF21AQ7Z4S6 1674 aa34.61■■■■□ 3.13
CHMP1A-207ENST00000549328 DNAJC5Q9H3Z4 198 aa34.5■■■■□ 3.11
CHMP1A-207ENST00000549328 CFTRP13569 1480 aa34.47■■■■□ 3.11
CHMP1A-207ENST00000549328 MRC2Q9UBG0 1479 aa34.39■■■■□ 3.1
CHMP1A-207ENST00000549328 FANCD2Q9BXW9 1451 aa34.35■■■■□ 3.09
CHMP1A-207ENST00000549328 CEP164Q9UPV0 1460 aa34.35■■■■□ 3.09
CHMP1A-207ENST00000549328 WDR62O43379 1518 aa34.3■■■■□ 3.08
CHMP1A-207ENST00000549328 CCDC88BA6NC98 1476 aa34.27■■■■□ 3.08
CHMP1A-207ENST00000549328 PRDM2Q13029 1718 aa34.08■■■■□ 3.05
CHMP1A-207ENST00000549328 URB2Q14146 1524 aaKnown RBP34.03■■■■□ 3.04
CHMP1A-207ENST00000549328 ABCC8Q09428 1581 aa33.77■■■■□ 3
CHMP1A-207ENST00000549328 TOPBP1Q92547 1522 aa33.74■■■□□ 2.99
CHMP1A-207ENST00000549328 IFT140Q96RY7 1462 aa33.67■■■□□ 2.98
CHMP1A-207ENST00000549328 SUPT5HO00267 1087 aaKnown RBP33.66■■■□□ 2.98
CHMP1A-207ENST00000549328 DNMBPQ6XZF7 1577 aa33.65■■■□□ 2.98
CHMP1A-207ENST00000549328 ZNF608Q9ULD9 1512 aaPredicted RBP33.53■■■□□ 2.96
CHMP1A-207ENST00000549328 OSCARQ8IYS5 282 aa33.48■■■□□ 2.95
CHMP1A-207ENST00000549328 POLA1P09884 1462 aaPredicted RBP33.43■■■□□ 2.94
CHMP1A-207ENST00000549328 TARBP1Q13395 1621 aaKnown RBP33.4■■■□□ 2.94
CHMP1A-207ENST00000549328 EIF4G3O43432 1585 aaKnown RBP33.34■■■□□ 2.93
CHMP1A-207ENST00000549328 SOGA1O94964 1423 aa33.31■■■□□ 2.92
CHMP1A-207ENST00000549328 CUX1P39880 1505 aa33.3■■■□□ 2.92
CHMP1A-207ENST00000549328 AQRO60306 1485 aaKnown RBP eCLIP33.29■■■□□ 2.927e-7■■■■■ 29
CHMP1A-207ENST00000549328 RAD54L2Q9Y4B4 1467 aa33.27■■■□□ 2.92
CHMP1A-207ENST00000549328 FGD5Q6ZNL6 1462 aa33.26■■■□□ 2.92
CHMP1A-207ENST00000549328 TDRD9Q8NDG6 1382 aaKnown RBP33.17■■■□□ 2.9
CHMP1A-207ENST00000549328 WDR97A6NE52 1622 aa33.14■■■□□ 2.9
CHMP1A-207ENST00000549328 TRIM41Q8WV44 630 aa33.08■■■□□ 2.89
CHMP1A-207ENST00000549328 FBLN2P98095 1184 aa33■■■□□ 2.87
CHMP1A-207ENST00000549328 CHD1O14646 1710 aa32.99■■■□□ 2.87
CHMP1A-207ENST00000549328 GRIN2BQ13224 1484 aa32.97■■■□□ 2.87
CHMP1A-207ENST00000549328 SNAPC4Q5SXM2 1469 aa32.95■■■□□ 2.87
CHMP1A-207ENST00000549328 ABCA10Q8WWZ4 1543 aa32.95■■■□□ 2.87
CHMP1A-207ENST00000549328 WRNQ14191 1432 aaPredicted RBP eCLIP32.94■■■□□ 2.86
CHMP1A-207ENST00000549328 MAGI1Q96QZ7 1491 aaPredicted RBP32.93■■■□□ 2.86
CHMP1A-207ENST00000549328 GAPVD1Q14C86 1478 aa32.9■■■□□ 2.86
CHMP1A-207ENST00000549328 RIMBP3CA6NJZ7 1639 aa32.9■■■□□ 2.86
CHMP1A-207ENST00000549328 RIMBP3BA6NNM3 1639 aa32.9■■■□□ 2.86
CHMP1A-207ENST00000549328 RIMBP3Q9UFD9 1639 aa32.9■■■□□ 2.86
CHMP1A-207ENST00000549328 TOP2BQ02880 1626 aa32.89■■■□□ 2.86
CHMP1A-207ENST00000549328 BIVM-ERCC5R4GMW8 1640 aa32.88■■■□□ 2.85
CHMP1A-207ENST00000549328 ARHGEF11O15085 1522 aa32.87■■■□□ 2.85
CHMP1A-207ENST00000549328 CHMP7Q8WUX9 453 aaPredicted RBP32.86■■■□□ 2.85
CHMP1A-207ENST00000549328 SYNJ1O43426 1573 aa32.83■■■□□ 2.85
CHMP1A-207ENST00000549328 ABCA5Q8WWZ7 1642 aa32.82■■■□□ 2.84
CHMP1A-207ENST00000549328 SYNJ2O15056 1496 aa32.81■■■□□ 2.84
CHMP1A-207ENST00000549328 PBRM1Q86U86 1689 aa32.78■■■□□ 2.84
CHMP1A-207ENST00000549328 CLASP1Q7Z460 1538 aa32.68■■■□□ 2.82
CHMP1A-207ENST00000549328 CYB5RLQ6IPT4 315 aa32.63■■■□□ 2.81
CHMP1A-207ENST00000549328 ARAP1Q96P48 1450 aa32.56■■■□□ 2.8
CHMP1A-207ENST00000549328 ERICH3Q5RHP9 1530 aa32.55■■■□□ 2.8
CHMP1A-207ENST00000549328 GRIN2AQ12879 1464 aa32.53■■■□□ 2.8
CHMP1A-207ENST00000549328 ADAMTS12P58397 1594 aa32.53■■■□□ 2.8
CHMP1A-207ENST00000549328 FHAD1B1AJZ9 1412 aa32.51■■■□□ 2.8
CHMP1A-207ENST00000549328 NUP160Q12769 1436 aa32.43■■■□□ 2.78
CHMP1A-207ENST00000549328 CEP170Q5SW79 1584 aa32.36■■■□□ 2.77
CHMP1A-207ENST00000549328 KIF27Q86VH2 1401 aa32.3■■■□□ 2.76
CHMP1A-207ENST00000549328 IGF1RP08069 1367 aa32.25■■■□□ 2.75
CHMP1A-207ENST00000549328 SHROOM2Q13796 1616 aa32.2■■■□□ 2.75
CHMP1A-207ENST00000549328 ERCC6L2Q5T890 1561 aa32.15■■■□□ 2.74
CHMP1A-207ENST00000549328 JPH4Q96JJ6 628 aa32.13■■■□□ 2.73
CHMP1A-207ENST00000549328 CUL7Q14999 1698 aa32.12■■■□□ 2.73
CHMP1A-207ENST00000549328 TRHP20396 242 aaPredicted RBP32.11■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms