RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 NISCHQ9Y2I1 1504 aa28.06■■■□□ 2.08
HDAC7-228ENST00000548938 CCDC180Q9P1Z9 1646 aa24.21■■□□□ 1.47
HDAC7-228ENST00000548938 SHROOM4Q9ULL8 1493 aa23.68■■□□□ 1.38
HDAC7-228ENST00000548938 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
HDAC7-228ENST00000548938 SUPT5HO00267 1087 aaKnown RBP23.39■■□□□ 1.34
HDAC7-228ENST00000548938 DCAF8L2P0C7V8 631 aa23.25■■□□□ 1.31
HDAC7-228ENST00000548938 DCAF1Q9Y4B6 1507 aa23.12■■□□□ 1.29
HDAC7-228ENST00000548938 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
HDAC7-228ENST00000548938 HRCP23327 699 aa22.99■■□□□ 1.27
HDAC7-228ENST00000548938 CHIC1Q5VXU3 224 aa22.91■■□□□ 1.26
HDAC7-228ENST00000548938 ABCC9O60706 1549 aa22.87■■□□□ 1.25
HDAC7-228ENST00000548938 PCGF6Q9BYE7 350 aa22.71■■□□□ 1.23
HDAC7-228ENST00000548938 NACADO15069 1562 aa22.55■■□□□ 1.2
HDAC7-228ENST00000548938 PPARGC1BQ86YN6 1023 aaKnown RBP22.53■■□□□ 1.2
HDAC7-228ENST00000548938 SCRIBQ14160 1630 aa22.45■■□□□ 1.18
HDAC7-228ENST00000548938 LOC105371045A0A1W2PR82 267 aa22.31■■□□□ 1.16
HDAC7-228ENST00000548938 RB1CC1Q8TDY2 1594 aa22.3■■□□□ 1.16
HDAC7-228ENST00000548938 TRIM26Q12899 539 aaPredicted RBP22.1■■□□□ 1.13
HDAC7-228ENST00000548938 RSF1Q96T23 1441 aaPredicted RBP21.92■■□□□ 1.1
HDAC7-228ENST00000548938 UNC13AQ9UPW8 1703 aa21.87■■□□□ 1.09
HDAC7-228ENST00000548938 CECR2Q9BXF3 1484 aa21.86■■□□□ 1.09
HDAC7-228ENST00000548938 ZEB1P37275 1124 aaPredicted RBP21.76■■□□□ 1.07
HDAC7-228ENST00000548938 MROH2BQ7Z745 1585 aa21.73■■□□□ 1.07
HDAC7-228ENST00000548938 PABPN1Q86U42 306 aaKnown RBP eCLIP21.7■■□□□ 1.06
HDAC7-228ENST00000548938 BICRAQ9NZM4 1560 aa21.69■■□□□ 1.06
HDAC7-228ENST00000548938 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
HDAC7-228ENST00000548938 FAM9AQ8IZU1 332 aaPredicted RBP21.63■■□□□ 1.05
HDAC7-228ENST00000548938 BAZ1AQ9NRL2 1556 aaPredicted RBP21.6■■□□□ 1.05
HDAC7-228ENST00000548938 WIZO95785 1651 aa21.54■■□□□ 1.04
HDAC7-228ENST00000548938 SCAF1Q9H7N4 1312 aaKnown RBP21.52■■□□□ 1.04
HDAC7-228ENST00000548938 EHMT2Q96KQ7 1210 aa21.5■■□□□ 1.03
HDAC7-228ENST00000548938 PELP1Q8IZL8 1130 aaKnown RBP21.49■■□□□ 1.03
HDAC7-228ENST00000548938 SMARCA4P51532 1647 aa21.49■■□□□ 1.03
HDAC7-228ENST00000548938 TOP2AP11388 1531 aaKnown RBP21.27■■□□□ 1
HDAC7-228ENST00000548938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.99
HDAC7-228ENST00000548938 PEG3Q9GZU2 1588 aa21.18■□□□□ 0.98
HDAC7-228ENST00000548938 CCER1Q8TC90 406 aaPredicted RBP21.14■□□□□ 0.97
HDAC7-228ENST00000548938 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
HDAC7-228ENST00000548938 ATAD2BQ9ULI0 1458 aa21.12■□□□□ 0.97
HDAC7-228ENST00000548938 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
HDAC7-228ENST00000548938 ACIN1Q9UKV3 1341 aaKnown RBP21.11■□□□□ 0.97
HDAC7-228ENST00000548938 NEUROD1Q13562 356 aa21.08■□□□□ 0.96
HDAC7-228ENST00000548938 EIF4G1Q04637 1599 aaKnown RBP21.04■□□□□ 0.96
HDAC7-228ENST00000548938 BAZ1BQ9UIG0 1483 aaKnown RBP20.99■□□□□ 0.95
HDAC7-228ENST00000548938 DIEXFQ68CQ4 756 aaKnown RBP20.97■□□□□ 0.95
HDAC7-228ENST00000548938 TTBK1Q5TCY1 1321 aaPredicted RBP20.93■□□□□ 0.94
HDAC7-228ENST00000548938 GTF3C3Q9Y5Q9 886 aa20.91■□□□□ 0.94
HDAC7-228ENST00000548938 WRNQ14191 1432 aaPredicted RBP eCLIP20.9■□□□□ 0.94
HDAC7-228ENST00000548938 CENPBP07199 599 aaPredicted RBP20.88■□□□□ 0.93
HDAC7-228ENST00000548938 ABCC8Q09428 1581 aa20.87■□□□□ 0.93
HDAC7-228ENST00000548938 NCAPD3P42695 1498 aa20.87■□□□□ 0.93
HDAC7-228ENST00000548938 CEP162Q5TB80 1403 aa20.85■□□□□ 0.93
HDAC7-228ENST00000548938 HMGXB3Q12766 1538 aa20.81■□□□□ 0.92
HDAC7-228ENST00000548938 SOGA1O94964 1423 aa20.75■□□□□ 0.91
HDAC7-228ENST00000548938 TNIKQ9UKE5 1360 aa20.73■□□□□ 0.91
HDAC7-228ENST00000548938 ZNF316A6NFI3 1004 aaPredicted RBP20.68■□□□□ 0.9
HDAC7-228ENST00000548938 CC2D2AQ9P2K1 1620 aa20.64■□□□□ 0.89
HDAC7-228ENST00000548938 RUSC2Q8N2Y8 1516 aa20.64■□□□□ 0.89
HDAC7-228ENST00000548938 UBTFP17480 764 aaKnown RBP20.62■□□□□ 0.89
HDAC7-228ENST00000548938 CSRNP3Q8WYN3 585 aa20.61■□□□□ 0.89
HDAC7-228ENST00000548938 EEA1Q15075 1411 aa20.6■□□□□ 0.89
HDAC7-228ENST00000548938 YTHDC1Q96MU7 727 aaKnown RBP20.58■□□□□ 0.88
HDAC7-228ENST00000548938 GOLGA3Q08378 1498 aa20.55■□□□□ 0.88
HDAC7-228ENST00000548938 MYT1Q01538 1121 aa20.53■□□□□ 0.88
HDAC7-228ENST00000548938 SYNJ1O43426 1573 aa20.5■□□□□ 0.87
HDAC7-228ENST00000548938 CFTRP13569 1480 aa20.49■□□□□ 0.87
HDAC7-228ENST00000548938 MIER1Q8N108 512 aa20.48■□□□□ 0.87
HDAC7-228ENST00000548938 HNRNPUL2Q1KMD3 747 aaKnown RBP20.47■□□□□ 0.87
HDAC7-228ENST00000548938 CADPSQ9ULU8 1353 aa20.38■□□□□ 0.85
HDAC7-228ENST00000548938 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
HDAC7-228ENST00000548938 CLIP1P30622 1438 aa20.35■□□□□ 0.85
HDAC7-228ENST00000548938 TOP2BQ02880 1626 aa20.35■□□□□ 0.85
HDAC7-228ENST00000548938 KIF21BO75037 1637 aa20.34■□□□□ 0.85
HDAC7-228ENST00000548938 VPS8Q8N3P4 1428 aa20.31■□□□□ 0.84
HDAC7-228ENST00000548938 CUX1P39880 1505 aa20.29■□□□□ 0.84
HDAC7-228ENST00000548938 BIVM-ERCC5R4GMW8 1640 aa20.29■□□□□ 0.84
HDAC7-228ENST00000548938 PRDM2Q13029 1718 aa20.26■□□□□ 0.83
HDAC7-228ENST00000548938 DNAJC5BQ9UF47 199 aa20.24■□□□□ 0.83
HDAC7-228ENST00000548938 APLP2Q06481 763 aa20.21■□□□□ 0.83
HDAC7-228ENST00000548938 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
HDAC7-228ENST00000548938 RANGAP1P46060 587 aaPredicted RBP20.18■□□□□ 0.82
HDAC7-228ENST00000548938 NESP48681 1621 aa20.17■□□□□ 0.82
HDAC7-228ENST00000548938 FANCD2Q9BXW9 1451 aa20.15■□□□□ 0.82
HDAC7-228ENST00000548938 DHX57Q6P158 1386 aaKnown RBP20.1■□□□□ 0.81
HDAC7-228ENST00000548938 LAMC3Q9Y6N6 1575 aa20.06■□□□□ 0.8
HDAC7-228ENST00000548938 CLSPNQ9HAW4 1339 aa20.06■□□□□ 0.8
HDAC7-228ENST00000548938 KIF27Q86VH2 1401 aa20.04■□□□□ 0.8
HDAC7-228ENST00000548938 SUPT16HQ9Y5B9 1047 aaKnown RBP20.02■□□□□ 0.8
HDAC7-228ENST00000548938 FGD5Q6ZNL6 1462 aa20.02■□□□□ 0.8
HDAC7-228ENST00000548938 ARAP1Q96P48 1450 aa19.99■□□□□ 0.79
HDAC7-228ENST00000548938 PRXQ9BXM0 1461 aa19.98■□□□□ 0.79
HDAC7-228ENST00000548938 DNMBPQ6XZF7 1577 aa19.96■□□□□ 0.79
HDAC7-228ENST00000548938 KANK4Q5T7N3 995 aaPredicted RBP19.96■□□□□ 0.79
HDAC7-228ENST00000548938 CUX2O14529 1486 aa19.96■□□□□ 0.79
HDAC7-228ENST00000548938 TOPBP1Q92547 1522 aa19.95■□□□□ 0.78
HDAC7-228ENST00000548938 PDS5BQ9NTI5 1447 aa19.95■□□□□ 0.78
HDAC7-228ENST00000548938 ERICH3Q5RHP9 1530 aa19.92■□□□□ 0.78
HDAC7-228ENST00000548938 URB2Q14146 1524 aaKnown RBP19.9■□□□□ 0.78
HDAC7-228ENST00000548938 POLA1P09884 1462 aaPredicted RBP19.89■□□□□ 0.78
HDAC7-228ENST00000548938 RRBP1Q9P2E9 1410 aaKnown RBP19.89■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms