RNA–Protein interactions for RNA: ENST00000548786.1

DDX54-205, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 498 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-205ENST00000548786 NISCHQ9Y2I1 1504 aa38.51■■■■□ 3.76
DDX54-205ENST00000548786 CCDC180Q9P1Z9 1646 aa34.27■■■■□ 3.08
DDX54-205ENST00000548786 ABCC9O60706 1549 aa33.83■■■■□ 3.01
DDX54-205ENST00000548786 DCAF8L2P0C7V8 631 aa32.41■■■□□ 2.78
DDX54-205ENST00000548786 RB1CC1Q8TDY2 1594 aa32.36■■■□□ 2.77
DDX54-205ENST00000548786 NACADO15069 1562 aa32.24■■■□□ 2.75
DDX54-205ENST00000548786 ZCCHC6Q5VYS8 1495 aaKnown RBP32.05■■■□□ 2.72
DDX54-205ENST00000548786 MYO15BQ96JP2 1530 aa31.91■■■□□ 2.7
DDX54-205ENST00000548786 DCAF1Q9Y4B6 1507 aa31.75■■■□□ 2.67
DDX54-205ENST00000548786 UNC13AQ9UPW8 1703 aa31.69■■■□□ 2.66
DDX54-205ENST00000548786 PABPN1Q86U42 306 aaKnown RBP eCLIP31.61■■■□□ 2.65
DDX54-205ENST00000548786 SCRIBQ14160 1630 aa31.42■■■□□ 2.62
DDX54-205ENST00000548786 BICRAQ9NZM4 1560 aa31.41■■■□□ 2.62
DDX54-205ENST00000548786 DNAJC5BQ9UF47 199 aa31.16■■■□□ 2.58
DDX54-205ENST00000548786 SHROOM4Q9ULL8 1493 aa30.92■■■□□ 2.54
DDX54-205ENST00000548786 EIF4G1Q04637 1599 aaKnown RBP30.6■■■□□ 2.49
DDX54-205ENST00000548786 CC2D2AQ9P2K1 1620 aa30.54■■■□□ 2.48
DDX54-205ENST00000548786 CECR2Q9BXF3 1484 aa30.36■■■□□ 2.45
DDX54-205ENST00000548786 SMARCA4P51532 1647 aa29.95■■■□□ 2.38
DDX54-205ENST00000548786 BAZ1AQ9NRL2 1556 aaPredicted RBP29.86■■■□□ 2.37
DDX54-205ENST00000548786 ATAD2BQ9ULI0 1458 aa29.8■■■□□ 2.36
DDX54-205ENST00000548786 NCAPD3P42695 1498 aa29.74■■■□□ 2.35
DDX54-205ENST00000548786 MROH2BQ7Z745 1585 aa29.74■■■□□ 2.35
DDX54-205ENST00000548786 SMARCA2P51531 1590 aa29.73■■■□□ 2.35
DDX54-205ENST00000548786 HMGXB3Q12766 1538 aa29.61■■■□□ 2.33
DDX54-205ENST00000548786 BAZ1BQ9UIG0 1483 aaKnown RBP29.58■■■□□ 2.33
DDX54-205ENST00000548786 PEG3Q9GZU2 1588 aa29.56■■■□□ 2.32
DDX54-205ENST00000548786 WIZO95785 1651 aa29.44■■■□□ 2.3
DDX54-205ENST00000548786 RSF1Q96T23 1441 aaPredicted RBP29.31■■■□□ 2.28
DDX54-205ENST00000548786 NESP48681 1621 aa29.23■■■□□ 2.27
DDX54-205ENST00000548786 ERCC6Q03468 1493 aa29.16■■■□□ 2.26
DDX54-205ENST00000548786 TOP2AP11388 1531 aaKnown RBP29.05■■■□□ 2.24
DDX54-205ENST00000548786 LAMC3Q9Y6N6 1575 aa29.01■■■□□ 2.24
DDX54-205ENST00000548786 CADPSQ9ULU8 1353 aa28.91■■■□□ 2.22
DDX54-205ENST00000548786 KIF21AQ7Z4S6 1674 aa28.86■■■□□ 2.21
DDX54-205ENST00000548786 PDS5BQ9NTI5 1447 aa28.83■■■□□ 2.21
DDX54-205ENST00000548786 CUX2O14529 1486 aa28.78■■■□□ 2.2
DDX54-205ENST00000548786 THOC2Q8NI27 1593 aaKnown RBP28.75■■■□□ 2.19
DDX54-205ENST00000548786 CCDC88BA6NC98 1476 aa28.73■■■□□ 2.19
DDX54-205ENST00000548786 CFTRP13569 1480 aa28.7■■■□□ 2.18
DDX54-205ENST00000548786 FANCD2Q9BXW9 1451 aa28.63■■■□□ 2.17
DDX54-205ENST00000548786 CEP164Q9UPV0 1460 aa28.6■■■□□ 2.17
DDX54-205ENST00000548786 SUPT5HO00267 1087 aaKnown RBP28.59■■■□□ 2.17
DDX54-205ENST00000548786 MRC2Q9UBG0 1479 aa28.59■■■□□ 2.17
DDX54-205ENST00000548786 PRDM2Q13029 1718 aa28.49■■■□□ 2.15
DDX54-205ENST00000548786 WDR62O43379 1518 aa28.48■■■□□ 2.15
DDX54-205ENST00000548786 URB2Q14146 1524 aaKnown RBP28.37■■■□□ 2.13
DDX54-205ENST00000548786 TOPBP1Q92547 1522 aa28.15■■■□□ 2.1
DDX54-205ENST00000548786 DNMBPQ6XZF7 1577 aa28.09■■■□□ 2.09
DDX54-205ENST00000548786 DNAJC5Q9H3Z4 198 aa28.09■■■□□ 2.09
DDX54-205ENST00000548786 ABCC8Q09428 1581 aa28.03■■■□□ 2.08
DDX54-205ENST00000548786 IFT140Q96RY7 1462 aa27.97■■■□□ 2.07
DDX54-205ENST00000548786 ZNF608Q9ULD9 1512 aaPredicted RBP27.94■■■□□ 2.06
DDX54-205ENST00000548786 CUX1P39880 1505 aa27.91■■■□□ 2.06
DDX54-205ENST00000548786 POLA1P09884 1462 aaPredicted RBP27.9■■■□□ 2.06
DDX54-205ENST00000548786 TARBP1Q13395 1621 aaKnown RBP27.85■■■□□ 2.05
DDX54-205ENST00000548786 FGD5Q6ZNL6 1462 aa27.83■■■□□ 2.05
DDX54-205ENST00000548786 RAD54L2Q9Y4B4 1467 aa27.83■■■□□ 2.05
DDX54-205ENST00000548786 EIF4G3O43432 1585 aaKnown RBP27.82■■■□□ 2.04
DDX54-205ENST00000548786 SOGA1O94964 1423 aa27.78■■■□□ 2.04
DDX54-205ENST00000548786 AQRO60306 1485 aaKnown RBP eCLIP27.76■■■□□ 2.046e-9■■■■■ 37.6
DDX54-205ENST00000548786 TDRD9Q8NDG6 1382 aaKnown RBP27.69■■■□□ 2.02
DDX54-205ENST00000548786 WRNQ14191 1432 aaPredicted RBP eCLIP27.65■■■□□ 2.02
DDX54-205ENST00000548786 SYNJ1O43426 1573 aa27.64■■■□□ 2.01
DDX54-205ENST00000548786 OSCARQ8IYS5 282 aa27.6■■■□□ 2.01
DDX54-205ENST00000548786 WDR97A6NE52 1622 aa27.59■■■□□ 2.01
DDX54-205ENST00000548786 TOP2BQ02880 1626 aa27.59■■■□□ 2.01
DDX54-205ENST00000548786 BIVM-ERCC5R4GMW8 1640 aa27.59■■■□□ 2.01
DDX54-205ENST00000548786 FBLN2P98095 1184 aa27.52■■■□□ 2
DDX54-205ENST00000548786 CHD1O14646 1710 aa27.51■■□□□ 1.99
DDX54-205ENST00000548786 SNAPC4Q5SXM2 1469 aa27.5■■□□□ 1.99
DDX54-205ENST00000548786 ABCA10Q8WWZ4 1543 aa27.49■■□□□ 1.99
DDX54-205ENST00000548786 GAPVD1Q14C86 1478 aa27.46■■□□□ 1.99
DDX54-205ENST00000548786 GRIN2BQ13224 1484 aa27.45■■□□□ 1.99
DDX54-205ENST00000548786 PBRM1Q86U86 1689 aa27.45■■□□□ 1.98
DDX54-205ENST00000548786 ABCA5Q8WWZ7 1642 aa27.43■■□□□ 1.98
DDX54-205ENST00000548786 MAGI1Q96QZ7 1491 aaPredicted RBP27.38■■□□□ 1.97
DDX54-205ENST00000548786 CHMP7Q8WUX9 453 aaPredicted RBP27.34■■□□□ 1.97
DDX54-205ENST00000548786 SYNJ2O15056 1496 aa27.3■■□□□ 1.96
DDX54-205ENST00000548786 TRIM41Q8WV44 630 aa27.28■■□□□ 1.96
DDX54-205ENST00000548786 RIMBP3CA6NJZ7 1639 aa27.23■■□□□ 1.95
DDX54-205ENST00000548786 RIMBP3BA6NNM3 1639 aa27.23■■□□□ 1.95
DDX54-205ENST00000548786 RIMBP3Q9UFD9 1639 aa27.23■■□□□ 1.95
DDX54-205ENST00000548786 ADAMTS12P58397 1594 aa27.2■■□□□ 1.94
DDX54-205ENST00000548786 ARHGEF11O15085 1522 aa27.19■■□□□ 1.94
DDX54-205ENST00000548786 ERICH3Q5RHP9 1530 aa27.16■■□□□ 1.94
DDX54-205ENST00000548786 CLASP1Q7Z460 1538 aa27.14■■□□□ 1.94
DDX54-205ENST00000548786 GRIN2AQ12879 1464 aa27.13■■□□□ 1.93
DDX54-205ENST00000548786 FHAD1B1AJZ9 1412 aa27.11■■□□□ 1.93
DDX54-205ENST00000548786 KIF27Q86VH2 1401 aa27.07■■□□□ 1.92
DDX54-205ENST00000548786 CEP170Q5SW79 1584 aa27.02■■□□□ 1.92
DDX54-205ENST00000548786 CYB5RLQ6IPT4 315 aa26.99■■□□□ 1.91
DDX54-205ENST00000548786 ARAP1Q96P48 1450 aa26.97■■□□□ 1.91
DDX54-205ENST00000548786 NUP160Q12769 1436 aa26.97■■□□□ 1.91
DDX54-205ENST00000548786 IGF1RP08069 1367 aa26.97■■□□□ 1.91
DDX54-205ENST00000548786 CUL7Q14999 1698 aa26.9■■□□□ 1.9
DDX54-205ENST00000548786 RUSC2Q8N2Y8 1516 aa26.86■■□□□ 1.89
DDX54-205ENST00000548786 ERCC6L2Q5T890 1561 aa26.84■■□□□ 1.89
DDX54-205ENST00000548786 CARMIL1Q5VZK9 1371 aa26.83■■□□□ 1.88
DDX54-205ENST00000548786 SHROOM2Q13796 1616 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms