RNA–Protein interactions for RNA: ENST00000548516.5

LETMD1-217, Transcript of LETM1 domain containing 1, humanhuman

TSL 5

Gene LETMD1, Length 850 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-217ENST00000548516 NISCHQ9Y2I1 1504 aa23.43■■□□□ 1.34
LETMD1-217ENST00000548516 ABCC9O60706 1549 aa21.42■■□□□ 1.02
LETMD1-217ENST00000548516 CCDC180Q9P1Z9 1646 aa20.97■□□□□ 0.95
LETMD1-217ENST00000548516 DNAJC5BQ9UF47 199 aa20.33■□□□□ 0.85
LETMD1-217ENST00000548516 DCAF8L2P0C7V8 631 aa20.18■□□□□ 0.82
LETMD1-217ENST00000548516 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
LETMD1-217ENST00000548516 PABPN1Q86U42 306 aaKnown RBP eCLIP20.02■□□□□ 0.8
LETMD1-217ENST00000548516 NACADO15069 1562 aa19.97■□□□□ 0.79
LETMD1-217ENST00000548516 UNC13AQ9UPW8 1703 aa19.61■□□□□ 0.73
LETMD1-217ENST00000548516 BICRAQ9NZM4 1560 aa19.57■□□□□ 0.72
LETMD1-217ENST00000548516 MYO15BQ96JP2 1530 aa19.56■□□□□ 0.72
LETMD1-217ENST00000548516 ZCCHC6Q5VYS8 1495 aaKnown RBP19.34■□□□□ 0.69
LETMD1-217ENST00000548516 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
LETMD1-217ENST00000548516 DCAF1Q9Y4B6 1507 aa19.25■□□□□ 0.67
LETMD1-217ENST00000548516 SCRIBQ14160 1630 aa19.25■□□□□ 0.67
LETMD1-217ENST00000548516 CC2D2AQ9P2K1 1620 aa19.24■□□□□ 0.67
LETMD1-217ENST00000548516 SHROOM4Q9ULL8 1493 aa19.22■□□□□ 0.67
LETMD1-217ENST00000548516 EIF4G1Q04637 1599 aaKnown RBP19.14■□□□□ 0.65
LETMD1-217ENST00000548516 DNAJC5Q9H3Z4 198 aa18.79■□□□□ 0.6
LETMD1-217ENST00000548516 ERCC6Q03468 1493 aa18.52■□□□□ 0.55
LETMD1-217ENST00000548516 NCAPD3P42695 1498 aa18.48■□□□□ 0.55
LETMD1-217ENST00000548516 CUX2O14529 1486 aa18.44■□□□□ 0.54
LETMD1-217ENST00000548516 ATAD2BQ9ULI0 1458 aa18.42■□□□□ 0.54
LETMD1-217ENST00000548516 NESP48681 1621 aa18.32■□□□□ 0.52
LETMD1-217ENST00000548516 SMARCA2P51531 1590 aa18.31■□□□□ 0.52
LETMD1-217ENST00000548516 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
LETMD1-217ENST00000548516 HMGXB3Q12766 1538 aa18.25■□□□□ 0.51
LETMD1-217ENST00000548516 BAZ1BQ9UIG0 1483 aaKnown RBP18.24■□□□□ 0.51
LETMD1-217ENST00000548516 BAZ1AQ9NRL2 1556 aaPredicted RBP18.18■□□□□ 0.5
LETMD1-217ENST00000548516 MROH2BQ7Z745 1585 aa18.08■□□□□ 0.49
LETMD1-217ENST00000548516 PDS5BQ9NTI5 1447 aa18.06■□□□□ 0.48
LETMD1-217ENST00000548516 PEG3Q9GZU2 1588 aa18.04■□□□□ 0.48
LETMD1-217ENST00000548516 LAMC3Q9Y6N6 1575 aa18.04■□□□□ 0.48
LETMD1-217ENST00000548516 THOC2Q8NI27 1593 aaKnown RBP18.04■□□□□ 0.48
LETMD1-217ENST00000548516 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
LETMD1-217ENST00000548516 CADPSQ9ULU8 1353 aa17.97■□□□□ 0.47
LETMD1-217ENST00000548516 KIF21AQ7Z4S6 1674 aa17.96■□□□□ 0.47
LETMD1-217ENST00000548516 MRC2Q9UBG0 1479 aa17.88■□□□□ 0.45
LETMD1-217ENST00000548516 WIZO95785 1651 aa17.83■□□□□ 0.44
LETMD1-217ENST00000548516 WDR62O43379 1518 aa17.78■□□□□ 0.44
LETMD1-217ENST00000548516 CEP164Q9UPV0 1460 aa17.77■□□□□ 0.44
LETMD1-217ENST00000548516 FANCD2Q9BXW9 1451 aa17.75■□□□□ 0.43
LETMD1-217ENST00000548516 OSCARQ8IYS5 282 aa17.72■□□□□ 0.43
LETMD1-217ENST00000548516 CFTRP13569 1480 aa17.67■□□□□ 0.42
LETMD1-217ENST00000548516 RSF1Q96T23 1441 aaPredicted RBP17.65■□□□□ 0.42
LETMD1-217ENST00000548516 URB2Q14146 1524 aaKnown RBP17.59■□□□□ 0.41
LETMD1-217ENST00000548516 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
LETMD1-217ENST00000548516 ZNF608Q9ULD9 1512 aaPredicted RBP17.45■□□□□ 0.38
LETMD1-217ENST00000548516 CCDC88BA6NC98 1476 aa17.44■□□□□ 0.38
LETMD1-217ENST00000548516 IFT140Q96RY7 1462 aa17.43■□□□□ 0.38
LETMD1-217ENST00000548516 CYB5RLQ6IPT4 315 aa17.38■□□□□ 0.37
LETMD1-217ENST00000548516 FBLN2P98095 1184 aa17.37■□□□□ 0.37
LETMD1-217ENST00000548516 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
LETMD1-217ENST00000548516 RIMBP3CA6NJZ7 1639 aa17.36■□□□□ 0.37
LETMD1-217ENST00000548516 RIMBP3BA6NNM3 1639 aa17.36■□□□□ 0.37
LETMD1-217ENST00000548516 RIMBP3Q9UFD9 1639 aa17.36■□□□□ 0.37
LETMD1-217ENST00000548516 ARHGEF11O15085 1522 aa17.31■□□□□ 0.36
LETMD1-217ENST00000548516 AQRO60306 1485 aaKnown RBP eCLIP17.31■□□□□ 0.361e-6■■□□□ 12.7
LETMD1-217ENST00000548516 PRDM2Q13029 1718 aa17.3■□□□□ 0.36
LETMD1-217ENST00000548516 ABCC8Q09428 1581 aa17.29■□□□□ 0.36
LETMD1-217ENST00000548516 TRHP20396 242 aaPredicted RBP17.29■□□□□ 0.36
LETMD1-217ENST00000548516 EIF4G3O43432 1585 aaKnown RBP17.24■□□□□ 0.35
LETMD1-217ENST00000548516 DNMBPQ6XZF7 1577 aa17.24■□□□□ 0.35
LETMD1-217ENST00000548516 TDRD9Q8NDG6 1382 aaKnown RBP17.2■□□□□ 0.34
LETMD1-217ENST00000548516 RAD54L2Q9Y4B4 1467 aa17.19■□□□□ 0.34
LETMD1-217ENST00000548516 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
LETMD1-217ENST00000548516 SOGA1O94964 1423 aa17.17■□□□□ 0.34
LETMD1-217ENST00000548516 TARBP1Q13395 1621 aaKnown RBP17.16■□□□□ 0.34
LETMD1-217ENST00000548516 CHMP7Q8WUX9 453 aaPredicted RBP17.15■□□□□ 0.34
LETMD1-217ENST00000548516 ARAP1Q96P48 1450 aa17.14■□□□□ 0.33
LETMD1-217ENST00000548516 CHD1O14646 1710 aa17.14■□□□□ 0.33
LETMD1-217ENST00000548516 SNAPC4Q5SXM2 1469 aa17.07■□□□□ 0.32
LETMD1-217ENST00000548516 FGD5Q6ZNL6 1462 aa17.05■□□□□ 0.32
LETMD1-217ENST00000548516 CUX1P39880 1505 aa16.99■□□□□ 0.31
LETMD1-217ENST00000548516 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
LETMD1-217ENST00000548516 MAGI1Q96QZ7 1491 aaPredicted RBP16.97■□□□□ 0.31
LETMD1-217ENST00000548516 SYNJ1O43426 1573 aa16.96■□□□□ 0.31
LETMD1-217ENST00000548516 CLASP1Q7Z460 1538 aa16.95■□□□□ 0.3
LETMD1-217ENST00000548516 SYNJ2O15056 1496 aa16.94■□□□□ 0.3
LETMD1-217ENST00000548516 AEBP2Q6ZN18 517 aaPredicted RBP16.94■□□□□ 0.3
LETMD1-217ENST00000548516 SUPT5HO00267 1087 aaKnown RBP16.93■□□□□ 0.3
LETMD1-217ENST00000548516 GAPVD1Q14C86 1478 aa16.92■□□□□ 0.3
LETMD1-217ENST00000548516 WDR97A6NE52 1622 aa16.91■□□□□ 0.3
LETMD1-217ENST00000548516 ABCA10Q8WWZ4 1543 aa16.81■□□□□ 0.28
LETMD1-217ENST00000548516 PBRM1Q86U86 1689 aa16.79■□□□□ 0.28
LETMD1-217ENST00000548516 WRNQ14191 1432 aaPredicted RBP eCLIP16.77■□□□□ 0.27
LETMD1-217ENST00000548516 GRIN2AQ12879 1464 aa16.75■□□□□ 0.27
LETMD1-217ENST00000548516 ABCA5Q8WWZ7 1642 aa16.74■□□□□ 0.27
LETMD1-217ENST00000548516 ERCC6L2Q5T890 1561 aa16.74■□□□□ 0.27
LETMD1-217ENST00000548516 FHAD1B1AJZ9 1412 aa16.69■□□□□ 0.26
LETMD1-217ENST00000548516 NUP160Q12769 1436 aa16.69■□□□□ 0.26
LETMD1-217ENST00000548516 CEP170Q5SW79 1584 aa16.68■□□□□ 0.26
LETMD1-217ENST00000548516 ADAMTS12P58397 1594 aa16.66■□□□□ 0.26
LETMD1-217ENST00000548516 JPH4Q96JJ6 628 aa16.65■□□□□ 0.26
LETMD1-217ENST00000548516 PRG4Q92954 1404 aaPredicted RBP16.63■□□□□ 0.25
LETMD1-217ENST00000548516 TOP2BQ02880 1626 aa16.61■□□□□ 0.25
LETMD1-217ENST00000548516 NPM1P06748 294 aaKnown RBP eCLIP16.61■□□□□ 0.25
LETMD1-217ENST00000548516 FAM69CQ0P6D2 419 aa16.58■□□□□ 0.24
LETMD1-217ENST00000548516 BIVM-ERCC5R4GMW8 1640 aa16.57■□□□□ 0.24
LETMD1-217ENST00000548516 ERICH3Q5RHP9 1530 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms