RNA–Protein interactions for RNA: ENST00000548232.1

NR4A1-209, Transcript of nuclear receptor subfamily 4 group A member 1, humanhuman

TSL 1 (best) BASIC

Gene NR4A1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1-209ENST00000548232 NISCHQ9Y2I1 1504 aa32.57■■■□□ 2.8
NR4A1-209ENST00000548232 ABCC9O60706 1549 aa29.47■■■□□ 2.31
NR4A1-209ENST00000548232 CCDC180Q9P1Z9 1646 aa29.14■■■□□ 2.26
NR4A1-209ENST00000548232 RB1CC1Q8TDY2 1594 aa27.9■■■□□ 2.06
NR4A1-209ENST00000548232 DCAF8L2P0C7V8 631 aa27.87■■■□□ 2.05
NR4A1-209ENST00000548232 DNAJC5BQ9UF47 199 aa27.81■■■□□ 2.04
NR4A1-209ENST00000548232 NACADO15069 1562 aa27.66■■■□□ 2.02
NR4A1-209ENST00000548232 PABPN1Q86U42 306 aaKnown RBP eCLIP27.54■■■□□ 2
NR4A1-209ENST00000548232 MYO15BQ96JP2 1530 aa27.18■■□□□ 1.94
NR4A1-209ENST00000548232 UNC13AQ9UPW8 1703 aa27.16■■□□□ 1.94
NR4A1-209ENST00000548232 BICRAQ9NZM4 1560 aa27.05■■□□□ 1.92
NR4A1-209ENST00000548232 ZCCHC6Q5VYS8 1495 aaKnown RBP26.93■■□□□ 1.9
NR4A1-209ENST00000548232 DCAF1Q9Y4B6 1507 aa26.81■■□□□ 1.88
NR4A1-209ENST00000548232 SCRIBQ14160 1630 aa26.69■■□□□ 1.86
NR4A1-209ENST00000548232 SHROOM4Q9ULL8 1493 aa26.62■■□□□ 1.85
NR4A1-209ENST00000548232 CECR2Q9BXF3 1484 aa26.53■■□□□ 1.84
NR4A1-209ENST00000548232 CC2D2AQ9P2K1 1620 aa26.52■■□□□ 1.84
NR4A1-209ENST00000548232 EIF4G1Q04637 1599 aaKnown RBP26.43■■□□□ 1.82
NR4A1-209ENST00000548232 DNAJC5Q9H3Z4 198 aa25.59■■□□□ 1.69
NR4A1-209ENST00000548232 NCAPD3P42695 1498 aa25.59■■□□□ 1.69
NR4A1-209ENST00000548232 ATAD2BQ9ULI0 1458 aa25.5■■□□□ 1.67
NR4A1-209ENST00000548232 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
NR4A1-209ENST00000548232 SMARCA4P51532 1647 aa25.39■■□□□ 1.66
NR4A1-209ENST00000548232 SMARCA2P51531 1590 aa25.39■■□□□ 1.65
NR4A1-209ENST00000548232 CUX2O14529 1486 aa25.34■■□□□ 1.65
NR4A1-209ENST00000548232 HMGXB3Q12766 1538 aa25.3■■□□□ 1.64
NR4A1-209ENST00000548232 BAZ1AQ9NRL2 1556 aaPredicted RBP25.28■■□□□ 1.64
NR4A1-209ENST00000548232 NESP48681 1621 aa25.27■■□□□ 1.64
NR4A1-209ENST00000548232 BAZ1BQ9UIG0 1483 aaKnown RBP25.27■■□□□ 1.64
NR4A1-209ENST00000548232 MROH2BQ7Z745 1585 aa25.13■■□□□ 1.61
NR4A1-209ENST00000548232 PEG3Q9GZU2 1588 aa25.09■■□□□ 1.61
NR4A1-209ENST00000548232 LAMC3Q9Y6N6 1575 aa24.97■■□□□ 1.59
NR4A1-209ENST00000548232 PDS5BQ9NTI5 1447 aa24.94■■□□□ 1.58
NR4A1-209ENST00000548232 THOC2Q8NI27 1593 aaKnown RBP24.88■■□□□ 1.57
NR4A1-209ENST00000548232 CADPSQ9ULU8 1353 aa24.86■■□□□ 1.57
NR4A1-209ENST00000548232 KIF21AQ7Z4S6 1674 aa24.82■■□□□ 1.56
NR4A1-209ENST00000548232 WIZO95785 1651 aa24.8■■□□□ 1.56
NR4A1-209ENST00000548232 MRC2Q9UBG0 1479 aa24.69■■□□□ 1.54
NR4A1-209ENST00000548232 RSF1Q96T23 1441 aaPredicted RBP24.6■■□□□ 1.53
NR4A1-209ENST00000548232 CEP164Q9UPV0 1460 aa24.58■■□□□ 1.52
NR4A1-209ENST00000548232 WDR62O43379 1518 aa24.56■■□□□ 1.52
NR4A1-209ENST00000548232 FANCD2Q9BXW9 1451 aa24.56■■□□□ 1.52
NR4A1-209ENST00000548232 TRIM41Q8WV44 630 aa24.54■■□□□ 1.52
NR4A1-209ENST00000548232 CFTRP13569 1480 aa24.49■■□□□ 1.51
NR4A1-209ENST00000548232 TOP2AP11388 1531 aaKnown RBP24.45■■□□□ 1.5
NR4A1-209ENST00000548232 OSCARQ8IYS5 282 aa24.35■■□□□ 1.49
NR4A1-209ENST00000548232 URB2Q14146 1524 aaKnown RBP24.34■■□□□ 1.49
NR4A1-209ENST00000548232 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
NR4A1-209ENST00000548232 ZNF608Q9ULD9 1512 aaPredicted RBP24.09■■□□□ 1.45
NR4A1-209ENST00000548232 IFT140Q96RY7 1462 aa24.08■■□□□ 1.45
NR4A1-209ENST00000548232 PRDM2Q13029 1718 aa24.07■■□□□ 1.44
NR4A1-209ENST00000548232 TOPBP1Q92547 1522 aa24.05■■□□□ 1.44
NR4A1-209ENST00000548232 ABCC8Q09428 1581 aa23.99■■□□□ 1.43
NR4A1-209ENST00000548232 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
NR4A1-209ENST00000548232 FBLN2P98095 1184 aa23.91■■□□□ 1.42
NR4A1-209ENST00000548232 AQRO60306 1485 aaKnown RBP eCLIP23.91■■□□□ 1.42
NR4A1-209ENST00000548232 RIMBP3CA6NJZ7 1639 aa23.88■■□□□ 1.41
NR4A1-209ENST00000548232 RIMBP3BA6NNM3 1639 aa23.88■■□□□ 1.41
NR4A1-209ENST00000548232 RIMBP3Q9UFD9 1639 aa23.88■■□□□ 1.41
NR4A1-209ENST00000548232 EIF4G3O43432 1585 aaKnown RBP23.86■■□□□ 1.41
NR4A1-209ENST00000548232 CYB5RLQ6IPT4 315 aa23.83■■□□□ 1.41
NR4A1-209ENST00000548232 ARHGEF11O15085 1522 aa23.8■■□□□ 1.4
NR4A1-209ENST00000548232 POLA1P09884 1462 aaPredicted RBP23.8■■□□□ 1.4
NR4A1-209ENST00000548232 TARBP1Q13395 1621 aaKnown RBP23.79■■□□□ 1.4
NR4A1-209ENST00000548232 RAD54L2Q9Y4B4 1467 aa23.79■■□□□ 1.4
NR4A1-209ENST00000548232 SOGA1O94964 1423 aa23.78■■□□□ 1.4
NR4A1-209ENST00000548232 TDRD9Q8NDG6 1382 aaKnown RBP23.78■■□□□ 1.4
NR4A1-209ENST00000548232 CHD1O14646 1710 aa23.69■■□□□ 1.38
NR4A1-209ENST00000548232 CHMP7Q8WUX9 453 aaPredicted RBP23.67■■□□□ 1.38
NR4A1-209ENST00000548232 FGD5Q6ZNL6 1462 aa23.66■■□□□ 1.38
NR4A1-209ENST00000548232 SUPT5HO00267 1087 aaKnown RBP23.65■■□□□ 1.38
NR4A1-209ENST00000548232 TRHP20396 242 aaPredicted RBP23.65■■□□□ 1.38
NR4A1-209ENST00000548232 SNAPC4Q5SXM2 1469 aa23.6■■□□□ 1.37
NR4A1-209ENST00000548232 CUX1P39880 1505 aa23.59■■□□□ 1.37
NR4A1-209ENST00000548232 ARAP1Q96P48 1450 aa23.57■■□□□ 1.36
NR4A1-209ENST00000548232 GRIN2BQ13224 1484 aa23.52■■□□□ 1.36
NR4A1-209ENST00000548232 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
NR4A1-209ENST00000548232 WDR97A6NE52 1622 aa23.48■■□□□ 1.35
NR4A1-209ENST00000548232 SYNJ2O15056 1496 aa23.44■■□□□ 1.34
NR4A1-209ENST00000548232 GAPVD1Q14C86 1478 aa23.44■■□□□ 1.34
NR4A1-209ENST00000548232 SYNJ1O43426 1573 aa23.44■■□□□ 1.34
NR4A1-209ENST00000548232 CLASP1Q7Z460 1538 aa23.42■■□□□ 1.34
NR4A1-209ENST00000548232 ABCA10Q8WWZ4 1543 aa23.34■■□□□ 1.33
NR4A1-209ENST00000548232 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
NR4A1-209ENST00000548232 PBRM1Q86U86 1689 aa23.31■■□□□ 1.32
NR4A1-209ENST00000548232 ABCA5Q8WWZ7 1642 aa23.26■■□□□ 1.31
NR4A1-209ENST00000548232 GRIN2AQ12879 1464 aa23.2■■□□□ 1.3
NR4A1-209ENST00000548232 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
NR4A1-209ENST00000548232 FHAD1B1AJZ9 1412 aa23.13■■□□□ 1.29
NR4A1-209ENST00000548232 ERCC6L2Q5T890 1561 aa23.12■■□□□ 1.29
NR4A1-209ENST00000548232 ADAMTS12P58397 1594 aa23.11■■□□□ 1.29
NR4A1-209ENST00000548232 BIVM-ERCC5R4GMW8 1640 aa23.11■■□□□ 1.29
NR4A1-209ENST00000548232 NUP160Q12769 1436 aa23.1■■□□□ 1.29
NR4A1-209ENST00000548232 CEP170Q5SW79 1584 aa23.09■■□□□ 1.29
NR4A1-209ENST00000548232 ERICH3Q5RHP9 1530 aa23.03■■□□□ 1.28
NR4A1-209ENST00000548232 AEBP2Q6ZN18 517 aaPredicted RBP23.03■■□□□ 1.28
NR4A1-209ENST00000548232 JPH4Q96JJ6 628 aa23.02■■□□□ 1.28
NR4A1-209ENST00000548232 PRG4Q92954 1404 aaPredicted RBP22.99■■□□□ 1.27
NR4A1-209ENST00000548232 SHROOM2Q13796 1616 aa22.94■■□□□ 1.26
NR4A1-209ENST00000548232 NPM1P06748 294 aaKnown RBP eCLIP22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms