RNA–Protein interactions for RNA: ENST00000548171.1

GATC-202, Transcript of glutamyl-tRNA amidotransferase subunit C, humanhuman

TSL 2

Gene GATC, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GATC-202ENST00000548171 NISCHQ9Y2I1 1504 aa50.72■■■■■ 5.71
GATC-202ENST00000548171 ABCC9O60706 1549 aa45.84■■■■■ 4.93
GATC-202ENST00000548171 CCDC180Q9P1Z9 1646 aa45.74■■■■■ 4.91
GATC-202ENST00000548171 RB1CC1Q8TDY2 1594 aa43.63■■■■■ 4.58
GATC-202ENST00000548171 NACADO15069 1562 aa43.27■■■■■ 4.52
GATC-202ENST00000548171 DNAJC5BQ9UF47 199 aa43.17■■■■■ 4.5
GATC-202ENST00000548171 DCAF8L2P0C7V8 631 aa42.81■■■■■ 4.44
GATC-202ENST00000548171 UNC13AQ9UPW8 1703 aa42.66■■■■■ 4.42
GATC-202ENST00000548171 MYO15BQ96JP2 1530 aa42.61■■■■■ 4.41
GATC-202ENST00000548171 PABPN1Q86U42 306 aaKnown RBP eCLIP42.57■■■■■ 4.41
GATC-202ENST00000548171 BICRAQ9NZM4 1560 aa42.31■■■■■ 4.36
GATC-202ENST00000548171 ZCCHC6Q5VYS8 1495 aaKnown RBP41.97■■■■■ 4.31
GATC-202ENST00000548171 DCAF1Q9Y4B6 1507 aa41.95■■■■■ 4.31
GATC-202ENST00000548171 SHROOM4Q9ULL8 1493 aa41.83■■■■■ 4.29
GATC-202ENST00000548171 SCRIBQ14160 1630 aa41.53■■■■■ 4.24
GATC-202ENST00000548171 CC2D2AQ9P2K1 1620 aa41.47■■■■■ 4.23
GATC-202ENST00000548171 CECR2Q9BXF3 1484 aa41.36■■■■■ 4.21
GATC-202ENST00000548171 EIF4G1Q04637 1599 aaKnown RBP41.32■■■■■ 4.2
GATC-202ENST00000548171 DNAJC5Q9H3Z4 198 aa39.95■■■■□ 3.99
GATC-202ENST00000548171 NCAPD3P42695 1498 aa39.91■■■■□ 3.98
GATC-202ENST00000548171 CUX2O14529 1486 aa39.72■■■■□ 3.95
GATC-202ENST00000548171 ATAD2BQ9ULI0 1458 aa39.71■■■■□ 3.95
GATC-202ENST00000548171 SMARCA2P51531 1590 aa39.66■■■■□ 3.94
GATC-202ENST00000548171 ERCC6Q03468 1493 aa39.64■■■■□ 3.94
GATC-202ENST00000548171 SMARCA4P51532 1647 aa39.64■■■■□ 3.94
GATC-202ENST00000548171 HMGXB3Q12766 1538 aa39.62■■■■□ 3.93
GATC-202ENST00000548171 BAZ1AQ9NRL2 1556 aaPredicted RBP39.42■■■■□ 3.9
GATC-202ENST00000548171 BAZ1BQ9UIG0 1483 aaKnown RBP39.34■■■■□ 3.89
GATC-202ENST00000548171 PEG3Q9GZU2 1588 aa39.29■■■■□ 3.88
GATC-202ENST00000548171 NESP48681 1621 aa39.29■■■■□ 3.88
GATC-202ENST00000548171 LAMC3Q9Y6N6 1575 aa39.09■■■■□ 3.85
GATC-202ENST00000548171 THOC2Q8NI27 1593 aaKnown RBP39.04■■■■□ 3.84
GATC-202ENST00000548171 MROH2BQ7Z745 1585 aa39.03■■■■□ 3.84
GATC-202ENST00000548171 KIF21AQ7Z4S6 1674 aa38.87■■■■□ 3.81
GATC-202ENST00000548171 PDS5BQ9NTI5 1447 aa38.84■■■■□ 3.81
GATC-202ENST00000548171 CADPSQ9ULU8 1353 aa38.65■■■■□ 3.78
GATC-202ENST00000548171 WIZO95785 1651 aa38.58■■■■□ 3.77
GATC-202ENST00000548171 MRC2Q9UBG0 1479 aa38.51■■■■□ 3.76
GATC-202ENST00000548171 WDR62O43379 1518 aa38.45■■■■□ 3.75
GATC-202ENST00000548171 CEP164Q9UPV0 1460 aa38.3■■■■□ 3.72
GATC-202ENST00000548171 FANCD2Q9BXW9 1451 aa38.22■■■■□ 3.71
GATC-202ENST00000548171 CFTRP13569 1480 aa38.17■■■■□ 3.7
GATC-202ENST00000548171 RSF1Q96T23 1441 aaPredicted RBP38.12■■■■□ 3.69
GATC-202ENST00000548171 TOP2AP11388 1531 aaKnown RBP38.1■■■■□ 3.69
GATC-202ENST00000548171 TRIM41Q8WV44 630 aa38.01■■■■□ 3.68
GATC-202ENST00000548171 PRDM2Q13029 1718 aa37.9■■■■□ 3.66
GATC-202ENST00000548171 URB2Q14146 1524 aaKnown RBP37.9■■■■□ 3.66
GATC-202ENST00000548171 OSCARQ8IYS5 282 aa37.81■■■■□ 3.64
GATC-202ENST00000548171 CCDC88BA6NC98 1476 aa37.61■■■■□ 3.61
GATC-202ENST00000548171 IFT140Q96RY7 1462 aa37.56■■■■□ 3.6
GATC-202ENST00000548171 TOPBP1Q92547 1522 aa37.46■■■■□ 3.59
GATC-202ENST00000548171 ZNF608Q9ULD9 1512 aaPredicted RBP37.46■■■■□ 3.59
GATC-202ENST00000548171 ABCC8Q09428 1581 aa37.45■■■■□ 3.59
GATC-202ENST00000548171 RIMBP3CA6NJZ7 1639 aa37.36■■■■□ 3.57
GATC-202ENST00000548171 RIMBP3BA6NNM3 1639 aa37.36■■■■□ 3.57
GATC-202ENST00000548171 RIMBP3Q9UFD9 1639 aa37.36■■■■□ 3.57
GATC-202ENST00000548171 DNMBPQ6XZF7 1577 aa37.34■■■■□ 3.57
GATC-202ENST00000548171 EIF4G3O43432 1585 aaKnown RBP37.31■■■■□ 3.56
GATC-202ENST00000548171 ARHGEF11O15085 1522 aa37.21■■■■□ 3.55
GATC-202ENST00000548171 TARBP1Q13395 1621 aaKnown RBP37.19■■■■□ 3.54
GATC-202ENST00000548171 CHD1O14646 1710 aa37.12■■■■□ 3.53
GATC-202ENST00000548171 AQRO60306 1485 aaKnown RBP eCLIP37.07■■■■□ 3.53
GATC-202ENST00000548171 POLA1P09884 1462 aaPredicted RBP37.05■■■■□ 3.52
GATC-202ENST00000548171 CYB5RLQ6IPT4 315 aa36.89■■■■□ 3.5
GATC-202ENST00000548171 WDR97A6NE52 1622 aa36.88■■■■□ 3.49
GATC-202ENST00000548171 RAD54L2Q9Y4B4 1467 aa36.88■■■■□ 3.49
GATC-202ENST00000548171 SOGA1O94964 1423 aa36.87■■■■□ 3.49
GATC-202ENST00000548171 FBLN2P98095 1184 aa36.87■■■■□ 3.49
GATC-202ENST00000548171 ARAP1Q96P48 1450 aa36.8■■■■□ 3.48
GATC-202ENST00000548171 TDRD9Q8NDG6 1382 aaKnown RBP36.79■■■■□ 3.48
GATC-202ENST00000548171 FGD5Q6ZNL6 1462 aa36.78■■■■□ 3.48
GATC-202ENST00000548171 SNAPC4Q5SXM2 1469 aa36.71■■■■□ 3.47
GATC-202ENST00000548171 CUX1P39880 1505 aa36.7■■■■□ 3.47
GATC-202ENST00000548171 MAGI1Q96QZ7 1491 aaPredicted RBP36.67■■■■□ 3.46
GATC-202ENST00000548171 CLASP1Q7Z460 1538 aa36.64■■■■□ 3.46
GATC-202ENST00000548171 SYNJ1O43426 1573 aa36.63■■■■□ 3.45
GATC-202ENST00000548171 GRIN2BQ13224 1484 aa36.62■■■■□ 3.45
GATC-202ENST00000548171 CHMP7Q8WUX9 453 aaPredicted RBP36.59■■■■□ 3.45
GATC-202ENST00000548171 TRHP20396 242 aaPredicted RBP36.57■■■■□ 3.44
GATC-202ENST00000548171 SYNJ2O15056 1496 aa36.54■■■■□ 3.44
GATC-202ENST00000548171 PBRM1Q86U86 1689 aa36.51■■■■□ 3.43
GATC-202ENST00000548171 GAPVD1Q14C86 1478 aa36.44■■■■□ 3.42
GATC-202ENST00000548171 ABCA10Q8WWZ4 1543 aa36.38■■■■□ 3.41
GATC-202ENST00000548171 ABCA5Q8WWZ7 1642 aa36.37■■■■□ 3.41
GATC-202ENST00000548171 WRNQ14191 1432 aaPredicted RBP eCLIP36.17■■■■□ 3.38
GATC-202ENST00000548171 GRIN2AQ12879 1464 aa36.14■■■■□ 3.38
GATC-202ENST00000548171 SUPT5HO00267 1087 aaKnown RBP36.14■■■■□ 3.38
GATC-202ENST00000548171 BIVM-ERCC5R4GMW8 1640 aa36.12■■■■□ 3.37
GATC-202ENST00000548171 ADAMTS12P58397 1594 aa36.1■■■■□ 3.37
GATC-202ENST00000548171 TOP2BQ02880 1626 aa36.09■■■■□ 3.37
GATC-202ENST00000548171 NUP160Q12769 1436 aa36.03■■■■□ 3.36
GATC-202ENST00000548171 CEP170Q5SW79 1584 aa36.01■■■■□ 3.35
GATC-202ENST00000548171 ERCC6L2Q5T890 1561 aa35.98■■■■□ 3.35
GATC-202ENST00000548171 FHAD1B1AJZ9 1412 aa35.98■■■■□ 3.35
GATC-202ENST00000548171 SHROOM2Q13796 1616 aa35.95■■■■□ 3.35
GATC-202ENST00000548171 ERICH3Q5RHP9 1530 aa35.94■■■■□ 3.34
GATC-202ENST00000548171 AEBP2Q6ZN18 517 aaPredicted RBP35.74■■■■□ 3.31
GATC-202ENST00000548171 PRG4Q92954 1404 aaPredicted RBP35.68■■■■□ 3.3
GATC-202ENST00000548171 KIF13AQ9H1H9 1805 aa35.64■■■■□ 3.3
GATC-202ENST00000548171 JPH4Q96JJ6 628 aa35.62■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms