RNA–Protein interactions for RNA: ENST00000547555.5

LETMD1-210, Transcript of LETM1 domain containing 1, humanhuman

TSL 5

Gene LETMD1, Length 1,658 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-210ENST00000547555 NISCHQ9Y2I1 1504 aa38.13■■■■□ 3.69
LETMD1-210ENST00000547555 CCDC180Q9P1Z9 1646 aa33.76■■■□□ 2.99
LETMD1-210ENST00000547555 ABCC9O60706 1549 aa32.43■■■□□ 2.78
LETMD1-210ENST00000547555 ZCCHC6Q5VYS8 1495 aaKnown RBP31.89■■■□□ 2.7
LETMD1-210ENST00000547555 DCAF1Q9Y4B6 1507 aa31.62■■■□□ 2.65
LETMD1-210ENST00000547555 MYO15BQ96JP2 1530 aa31.58■■■□□ 2.65
LETMD1-210ENST00000547555 NACADO15069 1562 aa31.57■■■□□ 2.64
LETMD1-210ENST00000547555 RB1CC1Q8TDY2 1594 aa31.47■■■□□ 2.63
LETMD1-210ENST00000547555 DCAF8L2P0C7V8 631 aa31.44■■■□□ 2.62
LETMD1-210ENST00000547555 UNC13AQ9UPW8 1703 aa30.85■■■□□ 2.53
LETMD1-210ENST00000547555 SCRIBQ14160 1630 aa30.76■■■□□ 2.51
LETMD1-210ENST00000547555 BICRAQ9NZM4 1560 aa30.54■■■□□ 2.48
LETMD1-210ENST00000547555 PABPN1Q86U42 306 aaKnown RBP eCLIP30.32■■■□□ 2.44
LETMD1-210ENST00000547555 SHROOM4Q9ULL8 1493 aa30.29■■■□□ 2.44
LETMD1-210ENST00000547555 EIF4G1Q04637 1599 aaKnown RBP29.66■■■□□ 2.34
LETMD1-210ENST00000547555 CECR2Q9BXF3 1484 aa29.62■■■□□ 2.33
LETMD1-210ENST00000547555 BAZ1AQ9NRL2 1556 aaPredicted RBP29.53■■■□□ 2.32
LETMD1-210ENST00000547555 SMARCA4P51532 1647 aa29.5■■■□□ 2.31
LETMD1-210ENST00000547555 CC2D2AQ9P2K1 1620 aa29.41■■■□□ 2.3
LETMD1-210ENST00000547555 MROH2BQ7Z745 1585 aa29.39■■■□□ 2.29
LETMD1-210ENST00000547555 DNAJC5BQ9UF47 199 aa29.28■■■□□ 2.28
LETMD1-210ENST00000547555 PEG3Q9GZU2 1588 aa29.25■■■□□ 2.27
LETMD1-210ENST00000547555 RSF1Q96T23 1441 aaPredicted RBP29.21■■■□□ 2.27
LETMD1-210ENST00000547555 SMARCA2P51531 1590 aa29.2■■■□□ 2.26
LETMD1-210ENST00000547555 ATAD2BQ9ULI0 1458 aa29.18■■■□□ 2.26
LETMD1-210ENST00000547555 WIZO95785 1651 aa29.1■■■□□ 2.25
LETMD1-210ENST00000547555 NCAPD3P42695 1498 aa29.1■■■□□ 2.25
LETMD1-210ENST00000547555 HMGXB3Q12766 1538 aa29.05■■■□□ 2.24
LETMD1-210ENST00000547555 BAZ1BQ9UIG0 1483 aaKnown RBP28.96■■■□□ 2.23
LETMD1-210ENST00000547555 TOP2AP11388 1531 aaKnown RBP28.84■■■□□ 2.21
LETMD1-210ENST00000547555 SUPT5HO00267 1087 aaKnown RBP28.7■■■□□ 2.19
LETMD1-210ENST00000547555 CCDC88BA6NC98 1476 aa28.45■■■□□ 2.15
LETMD1-210ENST00000547555 LAMC3Q9Y6N6 1575 aa28.28■■■□□ 2.12
LETMD1-210ENST00000547555 CADPSQ9ULU8 1353 aa28.25■■■□□ 2.11
LETMD1-210ENST00000547555 NESP48681 1621 aa28.23■■■□□ 2.11
LETMD1-210ENST00000547555 CFTRP13569 1480 aa28.22■■■□□ 2.11
LETMD1-210ENST00000547555 HRCP23327 699 aa28.17■■■□□ 2.1
LETMD1-210ENST00000547555 PRDM2Q13029 1718 aa28.15■■■□□ 2.1
LETMD1-210ENST00000547555 PDS5BQ9NTI5 1447 aa28.01■■■□□ 2.07
LETMD1-210ENST00000547555 KIF21AQ7Z4S6 1674 aa27.97■■■□□ 2.07
LETMD1-210ENST00000547555 FANCD2Q9BXW9 1451 aa27.94■■■□□ 2.06
LETMD1-210ENST00000547555 ERCC6Q03468 1493 aa27.89■■■□□ 2.06
LETMD1-210ENST00000547555 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
LETMD1-210ENST00000547555 CEP164Q9UPV0 1460 aa27.87■■■□□ 2.05
LETMD1-210ENST00000547555 THOC2Q8NI27 1593 aaKnown RBP27.77■■■□□ 2.04
LETMD1-210ENST00000547555 MRC2Q9UBG0 1479 aa27.73■■■□□ 2.03
LETMD1-210ENST00000547555 WDR62O43379 1518 aa27.66■■■□□ 2.02
LETMD1-210ENST00000547555 URB2Q14146 1524 aaKnown RBP27.65■■■□□ 2.02
LETMD1-210ENST00000547555 DNMBPQ6XZF7 1577 aa27.59■■■□□ 2.01
LETMD1-210ENST00000547555 ABCC8Q09428 1581 aa27.58■■■□□ 2.01
LETMD1-210ENST00000547555 TOPBP1Q92547 1522 aa27.56■■■□□ 2
LETMD1-210ENST00000547555 CUX1P39880 1505 aa27.55■■■□□ 2
LETMD1-210ENST00000547555 WRNQ14191 1432 aaPredicted RBP eCLIP27.52■■■□□ 2
LETMD1-210ENST00000547555 CUX2O14529 1486 aa27.49■■□□□ 1.99
LETMD1-210ENST00000547555 BIVM-ERCC5R4GMW8 1640 aa27.48■■□□□ 1.99
LETMD1-210ENST00000547555 SYNJ1O43426 1573 aa27.46■■□□□ 1.99
LETMD1-210ENST00000547555 TOP2BQ02880 1626 aa27.46■■□□□ 1.99
LETMD1-210ENST00000547555 PCGF6Q9BYE7 350 aa27.38■■□□□ 1.97
LETMD1-210ENST00000547555 POLA1P09884 1462 aaPredicted RBP27.36■■□□□ 1.97
LETMD1-210ENST00000547555 FGD5Q6ZNL6 1462 aa27.35■■□□□ 1.97
LETMD1-210ENST00000547555 TARBP1Q13395 1621 aaKnown RBP27.26■■□□□ 1.96
LETMD1-210ENST00000547555 IFT140Q96RY7 1462 aa27.25■■□□□ 1.95
LETMD1-210ENST00000547555 SOGA1O94964 1423 aa27.21■■□□□ 1.95
LETMD1-210ENST00000547555 WDR97A6NE52 1622 aa27.2■■□□□ 1.94
LETMD1-210ENST00000547555 RAD54L2Q9Y4B4 1467 aa27.19■■□□□ 1.94
LETMD1-210ENST00000547555 ZEB1P37275 1124 aaPredicted RBP27.17■■□□□ 1.94
LETMD1-210ENST00000547555 TRIM26Q12899 539 aaPredicted RBP27.16■■□□□ 1.94
LETMD1-210ENST00000547555 PELP1Q8IZL8 1130 aaKnown RBP27.14■■□□□ 1.94
LETMD1-210ENST00000547555 ABCA10Q8WWZ4 1543 aa27.14■■□□□ 1.93
LETMD1-210ENST00000547555 TRIM41Q8WV44 630 aa27.11■■□□□ 1.93
LETMD1-210ENST00000547555 ZNF608Q9ULD9 1512 aaPredicted RBP27.08■■□□□ 1.93
LETMD1-210ENST00000547555 EIF4G3O43432 1585 aaKnown RBP27.05■■□□□ 1.92
LETMD1-210ENST00000547555 ABCA5Q8WWZ7 1642 aa27.03■■□□□ 1.92
LETMD1-210ENST00000547555 TDRD9Q8NDG6 1382 aaKnown RBP26.97■■□□□ 1.91
LETMD1-210ENST00000547555 AQRO60306 1485 aaKnown RBP eCLIP26.96■■□□□ 1.911e-6■■□□□ 12.7
LETMD1-210ENST00000547555 GAPVD1Q14C86 1478 aa26.93■■□□□ 1.9
LETMD1-210ENST00000547555 PBRM1Q86U86 1689 aa26.91■■□□□ 1.9
LETMD1-210ENST00000547555 KIF27Q86VH2 1401 aa26.9■■□□□ 1.9
LETMD1-210ENST00000547555 GRIN2BQ13224 1484 aa26.87■■□□□ 1.89
LETMD1-210ENST00000547555 PPARGC1BQ86YN6 1023 aaKnown RBP26.86■■□□□ 1.89
LETMD1-210ENST00000547555 ERICH3Q5RHP9 1530 aa26.83■■□□□ 1.89
LETMD1-210ENST00000547555 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
LETMD1-210ENST00000547555 MAGI1Q96QZ7 1491 aaPredicted RBP26.77■■□□□ 1.88
LETMD1-210ENST00000547555 SNAPC4Q5SXM2 1469 aa26.76■■□□□ 1.87
LETMD1-210ENST00000547555 EEA1Q15075 1411 aa26.74■■□□□ 1.87
LETMD1-210ENST00000547555 ADAMTS12P58397 1594 aa26.72■■□□□ 1.87
LETMD1-210ENST00000547555 IGF1RP08069 1367 aa26.72■■□□□ 1.87
LETMD1-210ENST00000547555 CUL7Q14999 1698 aa26.71■■□□□ 1.87
LETMD1-210ENST00000547555 LOC105371045A0A1W2PR82 267 aa26.7■■□□□ 1.87
LETMD1-210ENST00000547555 FHAD1B1AJZ9 1412 aa26.64■■□□□ 1.86
LETMD1-210ENST00000547555 SYNJ2O15056 1496 aa26.64■■□□□ 1.86
LETMD1-210ENST00000547555 CHD1O14646 1710 aa26.63■■□□□ 1.85
LETMD1-210ENST00000547555 CARMIL1Q5VZK9 1371 aa26.56■■□□□ 1.84
LETMD1-210ENST00000547555 PRXQ9BXM0 1461 aa26.54■■□□□ 1.84
LETMD1-210ENST00000547555 CSRNP3Q8WYN3 585 aa26.54■■□□□ 1.84
LETMD1-210ENST00000547555 GRIN2AQ12879 1464 aa26.54■■□□□ 1.84
LETMD1-210ENST00000547555 FAM9AQ8IZU1 332 aaPredicted RBP26.5■■□□□ 1.83
LETMD1-210ENST00000547555 CHMP7Q8WUX9 453 aaPredicted RBP26.49■■□□□ 1.83
LETMD1-210ENST00000547555 RAPGEF2Q9Y4G8 1499 aa26.48■■□□□ 1.83
LETMD1-210ENST00000547555 KIF21BO75037 1637 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms