RNA–Protein interactions for RNA: ENST00000547517.5

RAB5C-204, Transcript of RAB5C, member RAS oncogene family, humanhuman

TSL 1 (best) BASIC

Gene RAB5C, Length 1,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-204ENST00000547517 NISCHQ9Y2I1 1504 aa28.86■■■□□ 2.21
RAB5C-204ENST00000547517 CCDC180Q9P1Z9 1646 aa25.71■■□□□ 1.71
RAB5C-204ENST00000547517 ABCC9O60706 1549 aa25.22■■□□□ 1.63
RAB5C-204ENST00000547517 RB1CC1Q8TDY2 1594 aa24.22■■□□□ 1.47
RAB5C-204ENST00000547517 NACADO15069 1562 aa24.16■■□□□ 1.46
RAB5C-204ENST00000547517 DCAF8L2P0C7V8 631 aa24.13■■□□□ 1.45
RAB5C-204ENST00000547517 ZCCHC6Q5VYS8 1495 aaKnown RBP24.06■■□□□ 1.44
RAB5C-204ENST00000547517 MYO15BQ96JP2 1530 aa23.97■■□□□ 1.43
RAB5C-204ENST00000547517 DCAF1Q9Y4B6 1507 aa23.85■■□□□ 1.41
RAB5C-204ENST00000547517 UNC13AQ9UPW8 1703 aa23.68■■□□□ 1.38
RAB5C-204ENST00000547517 PABPN1Q86U42 306 aaKnown RBP eCLIP23.53■■□□□ 1.36
RAB5C-204ENST00000547517 SCRIBQ14160 1630 aa23.5■■□□□ 1.35
RAB5C-204ENST00000547517 BICRAQ9NZM4 1560 aa23.48■■□□□ 1.35
RAB5C-204ENST00000547517 SHROOM4Q9ULL8 1493 aa23.22■■□□□ 1.31
RAB5C-204ENST00000547517 DNAJC5BQ9UF47 199 aa23.13■■□□□ 1.29
RAB5C-204ENST00000547517 EIF4G1Q04637 1599 aaKnown RBP22.89■■□□□ 1.25
RAB5C-204ENST00000547517 CC2D2AQ9P2K1 1620 aa22.81■■□□□ 1.24
RAB5C-204ENST00000547517 CECR2Q9BXF3 1484 aa22.66■■□□□ 1.22
RAB5C-204ENST00000547517 SMARCA4P51532 1647 aa22.44■■□□□ 1.18
RAB5C-204ENST00000547517 BAZ1AQ9NRL2 1556 aaPredicted RBP22.38■■□□□ 1.17
RAB5C-204ENST00000547517 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
RAB5C-204ENST00000547517 SMARCA2P51531 1590 aa22.28■■□□□ 1.16
RAB5C-204ENST00000547517 NCAPD3P42695 1498 aa22.27■■□□□ 1.16
RAB5C-204ENST00000547517 MROH2BQ7Z745 1585 aa22.26■■□□□ 1.15
RAB5C-204ENST00000547517 HMGXB3Q12766 1538 aa22.2■■□□□ 1.14
RAB5C-204ENST00000547517 PEG3Q9GZU2 1588 aa22.19■■□□□ 1.14
RAB5C-204ENST00000547517 BAZ1BQ9UIG0 1483 aaKnown RBP22.15■■□□□ 1.14
RAB5C-204ENST00000547517 WIZO95785 1651 aa22.03■■□□□ 1.12
RAB5C-204ENST00000547517 RSF1Q96T23 1441 aaPredicted RBP21.97■■□□□ 1.11
RAB5C-204ENST00000547517 DNAJC5Q9H3Z4 198 aa21.93■■□□□ 1.1
RAB5C-204ENST00000547517 NESP48681 1621 aa21.8■■□□□ 1.08
RAB5C-204ENST00000547517 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
RAB5C-204ENST00000547517 ERCC6Q03468 1493 aa21.76■■□□□ 1.07
RAB5C-204ENST00000547517 LAMC3Q9Y6N6 1575 aa21.73■■□□□ 1.07
RAB5C-204ENST00000547517 CADPSQ9ULU8 1353 aa21.62■■□□□ 1.05
RAB5C-204ENST00000547517 KIF21AQ7Z4S6 1674 aa21.56■■□□□ 1.04
RAB5C-204ENST00000547517 PDS5BQ9NTI5 1447 aa21.56■■□□□ 1.04
RAB5C-204ENST00000547517 CUX2O14529 1486 aa21.52■■□□□ 1.03
RAB5C-204ENST00000547517 THOC2Q8NI27 1593 aaKnown RBP21.51■■□□□ 1.03
RAB5C-204ENST00000547517 CCDC88BA6NC98 1476 aa21.51■■□□□ 1.03
RAB5C-204ENST00000547517 CFTRP13569 1480 aa21.5■■□□□ 1.03
RAB5C-204ENST00000547517 FANCD2Q9BXW9 1451 aa21.42■■□□□ 1.02
RAB5C-204ENST00000547517 CEP164Q9UPV0 1460 aa21.4■■□□□ 1.02
RAB5C-204ENST00000547517 MRC2Q9UBG0 1479 aa21.39■■□□□ 1.01
RAB5C-204ENST00000547517 PRDM2Q13029 1718 aa21.38■■□□□ 1.01
RAB5C-204ENST00000547517 SUPT5HO00267 1087 aaKnown RBP21.37■■□□□ 1.01
RAB5C-204ENST00000547517 WDR62O43379 1518 aa21.32■■□□□ 1
RAB5C-204ENST00000547517 URB2Q14146 1524 aaKnown RBP21.21■□□□□ 0.99
RAB5C-204ENST00000547517 TOPBP1Q92547 1522 aa21.07■□□□□ 0.96
RAB5C-204ENST00000547517 DNMBPQ6XZF7 1577 aa21.05■□□□□ 0.96
RAB5C-204ENST00000547517 ABCC8Q09428 1581 aa21.02■□□□□ 0.95
RAB5C-204ENST00000547517 IFT140Q96RY7 1462 aa20.94■□□□□ 0.94
RAB5C-204ENST00000547517 CUX1P39880 1505 aa20.89■□□□□ 0.94
RAB5C-204ENST00000547517 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
RAB5C-204ENST00000547517 ZNF608Q9ULD9 1512 aaPredicted RBP20.87■□□□□ 0.93
RAB5C-204ENST00000547517 FGD5Q6ZNL6 1462 aa20.84■□□□□ 0.93
RAB5C-204ENST00000547517 TARBP1Q13395 1621 aaKnown RBP20.84■□□□□ 0.93
RAB5C-204ENST00000547517 EIF4G3O43432 1585 aaKnown RBP20.81■□□□□ 0.92
RAB5C-204ENST00000547517 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
RAB5C-204ENST00000547517 SOGA1O94964 1423 aa20.77■□□□□ 0.91
RAB5C-204ENST00000547517 WRNQ14191 1432 aaPredicted RBP eCLIP20.73■□□□□ 0.91
RAB5C-204ENST00000547517 AQRO60306 1485 aaKnown RBP eCLIP20.72■□□□□ 0.914e-6■■■■■ 31
RAB5C-204ENST00000547517 SYNJ1O43426 1573 aa20.71■□□□□ 0.91
RAB5C-204ENST00000547517 BIVM-ERCC5R4GMW8 1640 aa20.7■□□□□ 0.9
RAB5C-204ENST00000547517 TOP2BQ02880 1626 aa20.69■□□□□ 0.9
RAB5C-204ENST00000547517 WDR97A6NE52 1622 aa20.68■□□□□ 0.9
RAB5C-204ENST00000547517 TDRD9Q8NDG6 1382 aaKnown RBP20.67■□□□□ 0.9
RAB5C-204ENST00000547517 ABCA10Q8WWZ4 1543 aa20.61■□□□□ 0.89
RAB5C-204ENST00000547517 SNAPC4Q5SXM2 1469 aa20.57■□□□□ 0.88
RAB5C-204ENST00000547517 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
RAB5C-204ENST00000547517 PBRM1Q86U86 1689 aa20.55■□□□□ 0.88
RAB5C-204ENST00000547517 OSCARQ8IYS5 282 aa20.55■□□□□ 0.88
RAB5C-204ENST00000547517 CHD1O14646 1710 aa20.55■□□□□ 0.88
RAB5C-204ENST00000547517 GRIN2BQ13224 1484 aa20.55■□□□□ 0.88
RAB5C-204ENST00000547517 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
RAB5C-204ENST00000547517 MAGI1Q96QZ7 1491 aaPredicted RBP20.51■□□□□ 0.87
RAB5C-204ENST00000547517 TRIM41Q8WV44 630 aa20.51■□□□□ 0.87
RAB5C-204ENST00000547517 FBLN2P98095 1184 aa20.48■□□□□ 0.87
RAB5C-204ENST00000547517 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
RAB5C-204ENST00000547517 ADAMTS12P58397 1594 aa20.39■□□□□ 0.85
RAB5C-204ENST00000547517 CHMP7Q8WUX9 453 aaPredicted RBP20.39■□□□□ 0.85
RAB5C-204ENST00000547517 ERICH3Q5RHP9 1530 aa20.36■□□□□ 0.85
RAB5C-204ENST00000547517 CLASP1Q7Z460 1538 aa20.32■□□□□ 0.84
RAB5C-204ENST00000547517 RIMBP3CA6NJZ7 1639 aa20.31■□□□□ 0.84
RAB5C-204ENST00000547517 RIMBP3BA6NNM3 1639 aa20.31■□□□□ 0.84
RAB5C-204ENST00000547517 RIMBP3Q9UFD9 1639 aa20.31■□□□□ 0.84
RAB5C-204ENST00000547517 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
RAB5C-204ENST00000547517 FHAD1B1AJZ9 1412 aa20.3■□□□□ 0.84
RAB5C-204ENST00000547517 ARHGEF11O15085 1522 aa20.3■□□□□ 0.84
RAB5C-204ENST00000547517 KIF27Q86VH2 1401 aa20.29■□□□□ 0.84
RAB5C-204ENST00000547517 CEP170Q5SW79 1584 aa20.22■□□□□ 0.83
RAB5C-204ENST00000547517 NUP160Q12769 1436 aa20.2■□□□□ 0.82
RAB5C-204ENST00000547517 CUL7Q14999 1698 aa20.19■□□□□ 0.82
RAB5C-204ENST00000547517 IGF1RP08069 1367 aa20.18■□□□□ 0.82
RAB5C-204ENST00000547517 ARAP1Q96P48 1450 aa20.14■□□□□ 0.81
RAB5C-204ENST00000547517 RUSC2Q8N2Y8 1516 aa20.1■□□□□ 0.81
RAB5C-204ENST00000547517 CARMIL1Q5VZK9 1371 aa20.08■□□□□ 0.8
RAB5C-204ENST00000547517 CYB5RLQ6IPT4 315 aa20.07■□□□□ 0.8
RAB5C-204ENST00000547517 SHROOM2Q13796 1616 aa20.06■□□□□ 0.8
RAB5C-204ENST00000547517 ERCC6L2Q5T890 1561 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms