RNA–Protein interactions for RNA: ENST00000547259.1

HDAC7-226, Transcript of histone deacetylase 7, humanhuman

TSL 3

Gene HDAC7, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-226ENST00000547259 NISCHQ9Y2I1 1504 aa29.34■■■□□ 2.29
HDAC7-226ENST00000547259 CCDC180Q9P1Z9 1646 aa26.43■■□□□ 1.82
HDAC7-226ENST00000547259 ABCC9O60706 1549 aa26.43■■□□□ 1.82
HDAC7-226ENST00000547259 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
HDAC7-226ENST00000547259 NACADO15069 1562 aa25.04■■□□□ 1.6
HDAC7-226ENST00000547259 DCAF8L2P0C7V8 631 aa24.83■■□□□ 1.57
HDAC7-226ENST00000547259 DNAJC5BQ9UF47 199 aa24.83■■□□□ 1.57
HDAC7-226ENST00000547259 MYO15BQ96JP2 1530 aa24.69■■□□□ 1.54
HDAC7-226ENST00000547259 PABPN1Q86U42 306 aaKnown RBP eCLIP24.58■■□□□ 1.53
HDAC7-226ENST00000547259 UNC13AQ9UPW8 1703 aa24.56■■□□□ 1.52
HDAC7-226ENST00000547259 BICRAQ9NZM4 1560 aa24.37■■□□□ 1.49
HDAC7-226ENST00000547259 DCAF1Q9Y4B6 1507 aa24.3■■□□□ 1.48
HDAC7-226ENST00000547259 ZCCHC6Q5VYS8 1495 aaKnown RBP24.26■■□□□ 1.47
HDAC7-226ENST00000547259 SHROOM4Q9ULL8 1493 aa24.22■■□□□ 1.47
HDAC7-226ENST00000547259 SCRIBQ14160 1630 aa23.96■■□□□ 1.43
HDAC7-226ENST00000547259 CC2D2AQ9P2K1 1620 aa23.9■■□□□ 1.42
HDAC7-226ENST00000547259 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
HDAC7-226ENST00000547259 EIF4G1Q04637 1599 aaKnown RBP23.83■■□□□ 1.41
HDAC7-226ENST00000547259 NCAPD3P42695 1498 aa23.09■■□□□ 1.29
HDAC7-226ENST00000547259 DNAJC5Q9H3Z4 198 aa23.03■■□□□ 1.28
HDAC7-226ENST00000547259 SMARCA2P51531 1590 aa22.96■■□□□ 1.27
HDAC7-226ENST00000547259 ATAD2BQ9ULI0 1458 aa22.95■■□□□ 1.26
HDAC7-226ENST00000547259 CUX2O14529 1486 aa22.93■■□□□ 1.26
HDAC7-226ENST00000547259 ERCC6Q03468 1493 aa22.92■■□□□ 1.26
HDAC7-226ENST00000547259 SMARCA4P51532 1647 aa22.9■■□□□ 1.26
HDAC7-226ENST00000547259 HMGXB3Q12766 1538 aa22.9■■□□□ 1.26
HDAC7-226ENST00000547259 BAZ1AQ9NRL2 1556 aaPredicted RBP22.83■■□□□ 1.25
HDAC7-226ENST00000547259 BAZ1BQ9UIG0 1483 aaKnown RBP22.75■■□□□ 1.23
HDAC7-226ENST00000547259 PEG3Q9GZU2 1588 aa22.72■■□□□ 1.23
HDAC7-226ENST00000547259 NESP48681 1621 aa22.63■■□□□ 1.21
HDAC7-226ENST00000547259 LAMC3Q9Y6N6 1575 aa22.6■■□□□ 1.21
HDAC7-226ENST00000547259 MROH2BQ7Z745 1585 aa22.55■■□□□ 1.2
HDAC7-226ENST00000547259 PDS5BQ9NTI5 1447 aa22.51■■□□□ 1.19
HDAC7-226ENST00000547259 THOC2Q8NI27 1593 aaKnown RBP22.46■■□□□ 1.19
HDAC7-226ENST00000547259 KIF21AQ7Z4S6 1674 aa22.39■■□□□ 1.17
HDAC7-226ENST00000547259 CADPSQ9ULU8 1353 aa22.38■■□□□ 1.17
HDAC7-226ENST00000547259 WIZO95785 1651 aa22.27■■□□□ 1.16
HDAC7-226ENST00000547259 MRC2Q9UBG0 1479 aa22.24■■□□□ 1.15
HDAC7-226ENST00000547259 WDR62O43379 1518 aa22.18■■□□□ 1.14
HDAC7-226ENST00000547259 CEP164Q9UPV0 1460 aa22.15■■□□□ 1.14
HDAC7-226ENST00000547259 FANCD2Q9BXW9 1451 aa22.09■■□□□ 1.13
HDAC7-226ENST00000547259 CFTRP13569 1480 aa22.09■■□□□ 1.13
HDAC7-226ENST00000547259 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
HDAC7-226ENST00000547259 TOP2AP11388 1531 aaKnown RBP22.04■■□□□ 1.12
HDAC7-226ENST00000547259 TRIM41Q8WV44 630 aa21.91■■□□□ 1.1
HDAC7-226ENST00000547259 OSCARQ8IYS5 282 aa21.9■■□□□ 1.1
HDAC7-226ENST00000547259 PRDM2Q13029 1718 aa21.89■■□□□ 1.1
HDAC7-226ENST00000547259 URB2Q14146 1524 aaKnown RBP21.86■■□□□ 1.09
HDAC7-226ENST00000547259 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.07
HDAC7-226ENST00000547259 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
HDAC7-226ENST00000547259 IFT140Q96RY7 1462 aa21.73■■□□□ 1.07
HDAC7-226ENST00000547259 TOPBP1Q92547 1522 aa21.65■■□□□ 1.06
HDAC7-226ENST00000547259 ZNF608Q9ULD9 1512 aaPredicted RBP21.59■■□□□ 1.05
HDAC7-226ENST00000547259 DNMBPQ6XZF7 1577 aa21.58■■□□□ 1.05
HDAC7-226ENST00000547259 SUPT5HO00267 1087 aaKnown RBP21.53■■□□□ 1.04
HDAC7-226ENST00000547259 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
HDAC7-226ENST00000547259 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
HDAC7-226ENST00000547259 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
HDAC7-226ENST00000547259 EIF4G3O43432 1585 aaKnown RBP21.51■■□□□ 1.03
HDAC7-226ENST00000547259 TARBP1Q13395 1621 aaKnown RBP21.45■■□□□ 1.02
HDAC7-226ENST00000547259 ARHGEF11O15085 1522 aa21.45■■□□□ 1.02
HDAC7-226ENST00000547259 AQRO60306 1485 aaKnown RBP eCLIP21.42■■□□□ 1.021e-6■■■■□ 25.4
HDAC7-226ENST00000547259 POLA1P09884 1462 aaPredicted RBP21.41■■□□□ 1.02
HDAC7-226ENST00000547259 CHD1O14646 1710 aa21.38■■□□□ 1.01
HDAC7-226ENST00000547259 FBLN2P98095 1184 aa21.36■■□□□ 1.01
HDAC7-226ENST00000547259 SOGA1O94964 1423 aa21.36■■□□□ 1.01
HDAC7-226ENST00000547259 WDR97A6NE52 1622 aa21.36■■□□□ 1.01
HDAC7-226ENST00000547259 CYB5RLQ6IPT4 315 aa21.33■■□□□ 1.01
HDAC7-226ENST00000547259 RAD54L2Q9Y4B4 1467 aa21.29■■□□□ 1
HDAC7-226ENST00000547259 TDRD9Q8NDG6 1382 aaKnown RBP21.27■■□□□ 1
HDAC7-226ENST00000547259 FGD5Q6ZNL6 1462 aa21.26■□□□□ 0.99
HDAC7-226ENST00000547259 CHMP7Q8WUX9 453 aaPredicted RBP21.24■□□□□ 0.99
HDAC7-226ENST00000547259 MAGI1Q96QZ7 1491 aaPredicted RBP21.23■□□□□ 0.99
HDAC7-226ENST00000547259 SNAPC4Q5SXM2 1469 aa21.2■□□□□ 0.98
HDAC7-226ENST00000547259 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
HDAC7-226ENST00000547259 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
HDAC7-226ENST00000547259 CUX1P39880 1505 aa21.19■□□□□ 0.98
HDAC7-226ENST00000547259 SYNJ1O43426 1573 aa21.19■□□□□ 0.98
HDAC7-226ENST00000547259 TRHP20396 242 aaPredicted RBP21.16■□□□□ 0.98
HDAC7-226ENST00000547259 SYNJ2O15056 1496 aa21.13■□□□□ 0.97
HDAC7-226ENST00000547259 CLASP1Q7Z460 1538 aa21.13■□□□□ 0.97
HDAC7-226ENST00000547259 GAPVD1Q14C86 1478 aa21.09■□□□□ 0.97
HDAC7-226ENST00000547259 PBRM1Q86U86 1689 aa21.06■□□□□ 0.96
HDAC7-226ENST00000547259 ABCA10Q8WWZ4 1543 aa21.05■□□□□ 0.96
HDAC7-226ENST00000547259 ABCA5Q8WWZ7 1642 aa21■□□□□ 0.95
HDAC7-226ENST00000547259 WRNQ14191 1432 aaPredicted RBP eCLIP20.99■□□□□ 0.95
HDAC7-226ENST00000547259 GRIN2AQ12879 1464 aa20.89■□□□□ 0.94
HDAC7-226ENST00000547259 TOP2BQ02880 1626 aa20.89■□□□□ 0.93
HDAC7-226ENST00000547259 BIVM-ERCC5R4GMW8 1640 aa20.89■□□□□ 0.93
HDAC7-226ENST00000547259 FHAD1B1AJZ9 1412 aa20.84■□□□□ 0.93
HDAC7-226ENST00000547259 ADAMTS12P58397 1594 aa20.84■□□□□ 0.93
HDAC7-226ENST00000547259 NUP160Q12769 1436 aa20.83■□□□□ 0.93
HDAC7-226ENST00000547259 ERICH3Q5RHP9 1530 aa20.82■□□□□ 0.92
HDAC7-226ENST00000547259 CEP170Q5SW79 1584 aa20.77■□□□□ 0.92
HDAC7-226ENST00000547259 SHROOM2Q13796 1616 aa20.75■□□□□ 0.91
HDAC7-226ENST00000547259 ERCC6L2Q5T890 1561 aa20.7■□□□□ 0.9
HDAC7-226ENST00000547259 AEBP2Q6ZN18 517 aaPredicted RBP20.69■□□□□ 0.9
HDAC7-226ENST00000547259 JPH4Q96JJ6 628 aa20.67■□□□□ 0.9
HDAC7-226ENST00000547259 PRG4Q92954 1404 aaPredicted RBP20.64■□□□□ 0.89
HDAC7-226ENST00000547259 NPM1P06748 294 aaKnown RBP eCLIP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms