RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 NISCHQ9Y2I1 1504 aa35.78■■■■□ 3.32
COL2A1-209ENST00000546974 CCDC180Q9P1Z9 1646 aa32.04■■■□□ 2.72
COL2A1-209ENST00000546974 ABCC9O60706 1549 aa31.8■■■□□ 2.68
COL2A1-209ENST00000546974 RB1CC1Q8TDY2 1594 aa30.4■■■□□ 2.46
COL2A1-209ENST00000546974 NACADO15069 1562 aa30.25■■■□□ 2.43
COL2A1-209ENST00000546974 DCAF8L2P0C7V8 631 aa30.09■■■□□ 2.41
COL2A1-209ENST00000546974 MYO15BQ96JP2 1530 aa29.92■■■□□ 2.38
COL2A1-209ENST00000546974 UNC13AQ9UPW8 1703 aa29.73■■■□□ 2.35
COL2A1-209ENST00000546974 ZCCHC6Q5VYS8 1495 aaKnown RBP29.68■■■□□ 2.34
COL2A1-209ENST00000546974 DNAJC5BQ9UF47 199 aa29.68■■■□□ 2.34
COL2A1-209ENST00000546974 PABPN1Q86U42 306 aaKnown RBP eCLIP29.65■■■□□ 2.346e-7■□□□□ 10.3
COL2A1-209ENST00000546974 DCAF1Q9Y4B6 1507 aa29.6■■■□□ 2.33
COL2A1-209ENST00000546974 BICRAQ9NZM4 1560 aa29.49■■■□□ 2.31
COL2A1-209ENST00000546974 SHROOM4Q9ULL8 1493 aa29.16■■■□□ 2.26
COL2A1-209ENST00000546974 SCRIBQ14160 1630 aa29.16■■■□□ 2.26
COL2A1-209ENST00000546974 CC2D2AQ9P2K1 1620 aa28.76■■■□□ 2.2
COL2A1-209ENST00000546974 EIF4G1Q04637 1599 aaKnown RBP28.75■■■□□ 2.19
COL2A1-209ENST00000546974 CECR2Q9BXF3 1484 aa28.66■■■□□ 2.18
COL2A1-209ENST00000546974 NCAPD3P42695 1498 aa27.92■■■□□ 2.06
COL2A1-209ENST00000546974 SMARCA4P51532 1647 aa27.87■■■□□ 2.05
COL2A1-209ENST00000546974 ATAD2BQ9ULI0 1458 aa27.85■■■□□ 2.05
COL2A1-209ENST00000546974 SMARCA2P51531 1590 aa27.79■■■□□ 2.04
COL2A1-209ENST00000546974 BAZ1AQ9NRL2 1556 aaPredicted RBP27.77■■■□□ 2.04
COL2A1-209ENST00000546974 HMGXB3Q12766 1538 aa27.72■■■□□ 2.03
COL2A1-209ENST00000546974 PEG3Q9GZU2 1588 aa27.62■■■□□ 2.01
COL2A1-209ENST00000546974 BAZ1BQ9UIG0 1483 aaKnown RBP27.58■■■□□ 2.01
COL2A1-209ENST00000546974 MROH2BQ7Z745 1585 aa27.55■■■□□ 2
COL2A1-209ENST00000546974 ERCC6Q03468 1493 aa27.46■■□□□ 1.99
COL2A1-209ENST00000546974 CUX2O14529 1486 aa27.38■■□□□ 1.97
COL2A1-209ENST00000546974 NESP48681 1621 aa27.38■■□□□ 1.97
COL2A1-209ENST00000546974 LAMC3Q9Y6N6 1575 aa27.26■■□□□ 1.96
COL2A1-209ENST00000546974 WIZO95785 1651 aa27.24■■□□□ 1.95
COL2A1-209ENST00000546974 DNAJC5Q9H3Z4 198 aa27.15■■□□□ 1.94
COL2A1-209ENST00000546974 PDS5BQ9NTI5 1447 aa27.1■■□□□ 1.93
COL2A1-209ENST00000546974 CADPSQ9ULU8 1353 aa27.09■■□□□ 1.93
COL2A1-209ENST00000546974 THOC2Q8NI27 1593 aaKnown RBP27.08■■□□□ 1.93
COL2A1-209ENST00000546974 RSF1Q96T23 1441 aaPredicted RBP27.06■■□□□ 1.92
COL2A1-209ENST00000546974 KIF21AQ7Z4S6 1674 aa27.05■■□□□ 1.92
COL2A1-209ENST00000546974 TOP2AP11388 1531 aaKnown RBP26.91■■□□□ 1.9
COL2A1-209ENST00000546974 MRC2Q9UBG0 1479 aa26.83■■□□□ 1.89
COL2A1-209ENST00000546974 CFTRP13569 1480 aa26.81■■□□□ 1.88
COL2A1-209ENST00000546974 WDR62O43379 1518 aa26.76■■□□□ 1.87
COL2A1-209ENST00000546974 CEP164Q9UPV0 1460 aa26.76■■□□□ 1.87
COL2A1-209ENST00000546974 FANCD2Q9BXW9 1451 aa26.75■■□□□ 1.87
COL2A1-209ENST00000546974 CCDC88BA6NC98 1476 aa26.61■■□□□ 1.85
COL2A1-209ENST00000546974 PRDM2Q13029 1718 aa26.58■■□□□ 1.85
COL2A1-209ENST00000546974 URB2Q14146 1524 aaKnown RBP26.51■■□□□ 1.83
COL2A1-209ENST00000546974 TOPBP1Q92547 1522 aa26.27■■□□□ 1.8
COL2A1-209ENST00000546974 ABCC8Q09428 1581 aa26.27■■□□□ 1.8
COL2A1-209ENST00000546974 IFT140Q96RY7 1462 aa26.23■■□□□ 1.79
COL2A1-209ENST00000546974 DNMBPQ6XZF7 1577 aa26.2■■□□□ 1.78
COL2A1-209ENST00000546974 OSCARQ8IYS5 282 aa26.17■■□□□ 1.78
COL2A1-209ENST00000546974 ZNF608Q9ULD9 1512 aaPredicted RBP26.14■■□□□ 1.78
COL2A1-209ENST00000546974 TARBP1Q13395 1621 aaKnown RBP26.03■■□□□ 1.76
COL2A1-209ENST00000546974 EIF4G3O43432 1585 aaKnown RBP26.02■■□□□ 1.76
COL2A1-209ENST00000546974 POLA1P09884 1462 aaPredicted RBP26.01■■□□□ 1.75
COL2A1-209ENST00000546974 TRIM41Q8WV44 630 aa25.99■■□□□ 1.75
COL2A1-209ENST00000546974 SUPT5HO00267 1087 aaKnown RBP25.97■■□□□ 1.75
COL2A1-209ENST00000546974 AQRO60306 1485 aaKnown RBP eCLIP25.95■■□□□ 1.74
COL2A1-209ENST00000546974 SOGA1O94964 1423 aa25.91■■□□□ 1.74
COL2A1-209ENST00000546974 RAD54L2Q9Y4B4 1467 aa25.9■■□□□ 1.74
COL2A1-209ENST00000546974 CUX1P39880 1505 aa25.88■■□□□ 1.73
COL2A1-209ENST00000546974 FGD5Q6ZNL6 1462 aa25.86■■□□□ 1.73
COL2A1-209ENST00000546974 WDR97A6NE52 1622 aa25.81■■□□□ 1.72
COL2A1-209ENST00000546974 TDRD9Q8NDG6 1382 aaKnown RBP25.81■■□□□ 1.72
COL2A1-209ENST00000546974 CHD1O14646 1710 aa25.8■■□□□ 1.72
COL2A1-209ENST00000546974 RIMBP3CA6NJZ7 1639 aa25.78■■□□□ 1.72
COL2A1-209ENST00000546974 RIMBP3BA6NNM3 1639 aa25.78■■□□□ 1.72
COL2A1-209ENST00000546974 RIMBP3Q9UFD9 1639 aa25.78■■□□□ 1.72
COL2A1-209ENST00000546974 FBLN2P98095 1184 aa25.73■■□□□ 1.71
COL2A1-209ENST00000546974 ARHGEF11O15085 1522 aa25.72■■□□□ 1.71
COL2A1-209ENST00000546974 SNAPC4Q5SXM2 1469 aa25.68■■□□□ 1.7
COL2A1-209ENST00000546974 GRIN2BQ13224 1484 aa25.66■■□□□ 1.7
COL2A1-209ENST00000546974 MAGI1Q96QZ7 1491 aaPredicted RBP25.65■■□□□ 1.7
COL2A1-209ENST00000546974 ABCA10Q8WWZ4 1543 aa25.61■■□□□ 1.69
COL2A1-209ENST00000546974 CHMP7Q8WUX9 453 aaPredicted RBP25.6■■□□□ 1.69
COL2A1-209ENST00000546974 GAPVD1Q14C86 1478 aa25.6■■□□□ 1.69
COL2A1-209ENST00000546974 PBRM1Q86U86 1689 aa25.57■■□□□ 1.68
COL2A1-209ENST00000546974 SYNJ2O15056 1496 aa25.55■■□□□ 1.68
COL2A1-209ENST00000546974 ABCA5Q8WWZ7 1642 aa25.54■■□□□ 1.68
COL2A1-209ENST00000546974 WRNQ14191 1432 aaPredicted RBP eCLIP25.54■■□□□ 1.68
COL2A1-209ENST00000546974 TOP2BQ02880 1626 aa25.53■■□□□ 1.68
COL2A1-209ENST00000546974 BIVM-ERCC5R4GMW8 1640 aa25.53■■□□□ 1.68
COL2A1-209ENST00000546974 SYNJ1O43426 1573 aa25.52■■□□□ 1.68
COL2A1-209ENST00000546974 CYB5RLQ6IPT4 315 aa25.52■■□□□ 1.68
COL2A1-209ENST00000546974 CLASP1Q7Z460 1538 aa25.51■■□□□ 1.67
COL2A1-209ENST00000546974 ARAP1Q96P48 1450 aa25.47■■□□□ 1.67
COL2A1-209ENST00000546974 ADAMTS12P58397 1594 aa25.33■■□□□ 1.65
COL2A1-209ENST00000546974 GRIN2AQ12879 1464 aa25.33■■□□□ 1.65
COL2A1-209ENST00000546974 ERICH3Q5RHP9 1530 aa25.3■■□□□ 1.64
COL2A1-209ENST00000546974 FHAD1B1AJZ9 1412 aa25.29■■□□□ 1.64
COL2A1-209ENST00000546974 NUP160Q12769 1436 aa25.24■■□□□ 1.63
COL2A1-209ENST00000546974 CEP170Q5SW79 1584 aa25.22■■□□□ 1.63
COL2A1-209ENST00000546974 TRHP20396 242 aaPredicted RBP25.17■■□□□ 1.62
COL2A1-209ENST00000546974 SHROOM2Q13796 1616 aa25.11■■□□□ 1.61
COL2A1-209ENST00000546974 ERCC6L2Q5T890 1561 aa25.1■■□□□ 1.61
COL2A1-209ENST00000546974 KIF27Q86VH2 1401 aa25.04■■□□□ 1.6
COL2A1-209ENST00000546974 IGF1RP08069 1367 aa25.02■■□□□ 1.6
COL2A1-209ENST00000546974 JPH4Q96JJ6 628 aa25■■□□□ 1.59
COL2A1-209ENST00000546974 PRG4Q92954 1404 aaPredicted RBP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms