RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 NISCHQ9Y2I1 1504 aa27.9■■■□□ 2.06
SRP54-202ENST00000546080 SHROOM4Q9ULL8 1493 aa24.24■■□□□ 1.47
SRP54-202ENST00000546080 SUPT5HO00267 1087 aaKnown RBP24.01■■□□□ 1.43
SRP54-202ENST00000546080 HRCP23327 699 aa23.8■■□□□ 1.4
SRP54-202ENST00000546080 ZCCHC6Q5VYS8 1495 aaKnown RBP23.71■■□□□ 1.39
SRP54-202ENST00000546080 MYO15BQ96JP2 1530 aa23.65■■□□□ 1.38
SRP54-202ENST00000546080 CHIC1Q5VXU3 224 aa23.57■■□□□ 1.36
SRP54-202ENST00000546080 CCDC180Q9P1Z9 1646 aa23.47■■□□□ 1.35
SRP54-202ENST00000546080 PCGF6Q9BYE7 350 aa23.42■■□□□ 1.34
SRP54-202ENST00000546080 PPARGC1BQ86YN6 1023 aaKnown RBP23.21■■□□□ 1.31
SRP54-202ENST00000546080 DCAF1Q9Y4B6 1507 aa23.18■■□□□ 1.3
SRP54-202ENST00000546080 DCAF8L2P0C7V8 631 aa23.04■■□□□ 1.28
SRP54-202ENST00000546080 LOC105371045A0A1W2PR82 267 aa22.9■■□□□ 1.26
SRP54-202ENST00000546080 TRIM26Q12899 539 aaPredicted RBP22.85■■□□□ 1.25
SRP54-202ENST00000546080 ZEB1P37275 1124 aaPredicted RBP22.62■■□□□ 1.21
SRP54-202ENST00000546080 PELP1Q8IZL8 1130 aaKnown RBP22.53■■□□□ 1.2
SRP54-202ENST00000546080 ABCC9O60706 1549 aa22.51■■□□□ 1.19
SRP54-202ENST00000546080 TRIM41Q8WV44 630 aa22.31■■□□□ 1.16
SRP54-202ENST00000546080 RSF1Q96T23 1441 aaPredicted RBP22.29■■□□□ 1.16
SRP54-202ENST00000546080 SCAF1Q9H7N4 1312 aaKnown RBP22.26■■□□□ 1.15
SRP54-202ENST00000546080 FAM9AQ8IZU1 332 aaPredicted RBP22.18■■□□□ 1.14
SRP54-202ENST00000546080 RB1CC1Q8TDY2 1594 aa22.17■■□□□ 1.14
SRP54-202ENST00000546080 SCRIBQ14160 1630 aa22.14■■□□□ 1.14
SRP54-202ENST00000546080 EHMT2Q96KQ7 1210 aa22■■□□□ 1.11
SRP54-202ENST00000546080 ACIN1Q9UKV3 1341 aaKnown RBP21.89■■□□□ 1.09
SRP54-202ENST00000546080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.83■■□□□ 1.09
SRP54-202ENST00000546080 CCER1Q8TC90 406 aaPredicted RBP21.83■■□□□ 1.09
SRP54-202ENST00000546080 NEUROD1Q13562 356 aa21.79■■□□□ 1.08
SRP54-202ENST00000546080 CECR2Q9BXF3 1484 aa21.73■■□□□ 1.07
SRP54-202ENST00000546080 MROH2BQ7Z745 1585 aa21.72■■□□□ 1.07
SRP54-202ENST00000546080 CENPBP07199 599 aaPredicted RBP21.71■■□□□ 1.07
SRP54-202ENST00000546080 DIEXFQ68CQ4 756 aaKnown RBP21.7■■□□□ 1.06
SRP54-202ENST00000546080 WIZO95785 1651 aa21.66■■□□□ 1.06
SRP54-202ENST00000546080 GTF3C3Q9Y5Q9 886 aa21.65■■□□□ 1.06
SRP54-202ENST00000546080 EIF4G1Q04637 1599 aaKnown RBP21.59■■□□□ 1.05
SRP54-202ENST00000546080 MYT1Q01538 1121 aa21.58■■□□□ 1.04
SRP54-202ENST00000546080 NACADO15069 1562 aa21.57■■□□□ 1.04
SRP54-202ENST00000546080 BAZ1AQ9NRL2 1556 aaPredicted RBP21.57■■□□□ 1.04
SRP54-202ENST00000546080 WRNQ14191 1432 aaPredicted RBP eCLIP21.55■■□□□ 1.04
SRP54-202ENST00000546080 CEP162Q5TB80 1403 aa21.45■■□□□ 1.02
SRP54-202ENST00000546080 TTBK1Q5TCY1 1321 aaPredicted RBP21.45■■□□□ 1.02
SRP54-202ENST00000546080 ZNF316A6NFI3 1004 aaPredicted RBP21.39■■□□□ 1.01
SRP54-202ENST00000546080 ABCC8Q09428 1581 aa21.38■■□□□ 1.01
SRP54-202ENST00000546080 CCDC88BA6NC98 1476 aa21.37■■□□□ 1.01
SRP54-202ENST00000546080 TNIKQ9UKE5 1360 aa21.35■■□□□ 1.01
SRP54-202ENST00000546080 TOP2AP11388 1531 aaKnown RBP21.31■■□□□ 1
SRP54-202ENST00000546080 SOGA1O94964 1423 aa21.26■□□□□ 0.99
SRP54-202ENST00000546080 EEA1Q15075 1411 aa21.26■□□□□ 0.99
SRP54-202ENST00000546080 YTHDC1Q96MU7 727 aaKnown RBP21.24■□□□□ 0.99
SRP54-202ENST00000546080 SMARCA2P51531 1590 aa21.21■□□□□ 0.99
SRP54-202ENST00000546080 UBTFP17480 764 aaKnown RBP21.2■□□□□ 0.98
SRP54-202ENST00000546080 CSRNP3Q8WYN3 585 aa21.19■□□□□ 0.98
SRP54-202ENST00000546080 GOLGA3Q08378 1498 aa21.16■□□□□ 0.98
SRP54-202ENST00000546080 SMARCA4P51532 1647 aa21.15■□□□□ 0.98
SRP54-202ENST00000546080 MIER1Q8N108 512 aa21.14■□□□□ 0.97
SRP54-202ENST00000546080 RUSC2Q8N2Y8 1516 aa21.13■□□□□ 0.97
SRP54-202ENST00000546080 HNRNPUL2Q1KMD3 747 aaKnown RBP21.05■□□□□ 0.96
SRP54-202ENST00000546080 CEP164Q9UPV0 1460 aa20.98■□□□□ 0.95
SRP54-202ENST00000546080 UNC13AQ9UPW8 1703 aa20.95■□□□□ 0.94
SRP54-202ENST00000546080 KIF21BO75037 1637 aa20.95■□□□□ 0.94
SRP54-202ENST00000546080 CLIP1P30622 1438 aa20.93■□□□□ 0.94
SRP54-202ENST00000546080 VPS8Q8N3P4 1428 aa20.91■□□□□ 0.94
SRP54-202ENST00000546080 APLP2Q06481 763 aa20.87■□□□□ 0.93
SRP54-202ENST00000546080 CLSPNQ9HAW4 1339 aa20.84■□□□□ 0.93
SRP54-202ENST00000546080 BAZ1BQ9UIG0 1483 aaKnown RBP20.83■□□□□ 0.92
SRP54-202ENST00000546080 SYNJ1O43426 1573 aa20.82■□□□□ 0.92
SRP54-202ENST00000546080 PABPN1Q86U42 306 aaKnown RBP eCLIP20.78■□□□□ 0.92
SRP54-202ENST00000546080 BICRAQ9NZM4 1560 aa20.76■□□□□ 0.91
SRP54-202ENST00000546080 RAPGEF2Q9Y4G8 1499 aa20.73■□□□□ 0.91
SRP54-202ENST00000546080 SUPT16HQ9Y5B9 1047 aaKnown RBP20.72■□□□□ 0.91
SRP54-202ENST00000546080 DHX57Q6P158 1386 aaKnown RBP20.7■□□□□ 0.9
SRP54-202ENST00000546080 PEG3Q9GZU2 1588 aa20.69■□□□□ 0.9
SRP54-202ENST00000546080 RANGAP1P46060 587 aaPredicted RBP20.65■□□□□ 0.9
SRP54-202ENST00000546080 ARAP1Q96P48 1450 aa20.53■□□□□ 0.88
SRP54-202ENST00000546080 TSHZ2Q9NRE2 1034 aa20.52■□□□□ 0.88
SRP54-202ENST00000546080 TOP2BQ02880 1626 aa20.51■□□□□ 0.87
SRP54-202ENST00000546080 ERICH3Q5RHP9 1530 aa20.51■□□□□ 0.87
SRP54-202ENST00000546080 RRBP1Q9P2E9 1410 aaKnown RBP20.49■□□□□ 0.87
SRP54-202ENST00000546080 KANK4Q5T7N3 995 aaPredicted RBP20.47■□□□□ 0.87
SRP54-202ENST00000546080 ATAD2BQ9ULI0 1458 aa20.47■□□□□ 0.87
SRP54-202ENST00000546080 CUX2O14529 1486 aa20.46■□□□□ 0.87
SRP54-202ENST00000546080 PRXQ9BXM0 1461 aa20.44■□□□□ 0.86
SRP54-202ENST00000546080 BIVM-ERCC5R4GMW8 1640 aa20.43■□□□□ 0.86
SRP54-202ENST00000546080 ANP32EQ9BTT0 268 aa20.43■□□□□ 0.86
SRP54-202ENST00000546080 CCNB3Q8WWL7 1395 aa20.39■□□□□ 0.85
SRP54-202ENST00000546080 KCNH8Q96L42 1107 aa20.32■□□□□ 0.84
SRP54-202ENST00000546080 ITGAEP38570 1179 aa20.29■□□□□ 0.84
SRP54-202ENST00000546080 RAB3GAP2Q9H2M9 1393 aa20.28■□□□□ 0.84
SRP54-202ENST00000546080 MAPKBP1O60336 1514 aa20.28■□□□□ 0.84
SRP54-202ENST00000546080 BCANQ96GW7 911 aa20.27■□□□□ 0.84
SRP54-202ENST00000546080 ARHGAP35Q9NRY4 1499 aa20.25■□□□□ 0.83
SRP54-202ENST00000546080 KIF27Q86VH2 1401 aa20.25■□□□□ 0.83
SRP54-202ENST00000546080 FKBP8Q14318 412 aa20.24■□□□□ 0.83
SRP54-202ENST00000546080 CUX1P39880 1505 aa20.19■□□□□ 0.82
SRP54-202ENST00000546080 DDX10Q13206 875 aaKnown RBP20.18■□□□□ 0.82
SRP54-202ENST00000546080 SETD5Q9C0A6 1442 aa20.17■□□□□ 0.82
SRP54-202ENST00000546080 WDR97A6NE52 1622 aa20.17■□□□□ 0.82
SRP54-202ENST00000546080 NEFLP07196 543 aa20.17■□□□□ 0.82
SRP54-202ENST00000546080 TIAM1Q13009 1591 aa20.14■□□□□ 0.82
SRP54-202ENST00000546080 MAP3K1Q13233 1512 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms