RNA–Protein interactions for RNA: ENST00000545934.5

CPSF7-225, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 565 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-225ENST00000545934 NISCHQ9Y2I1 1504 aa42.54■■■■■ 4.4
CPSF7-225ENST00000545934 CCDC180Q9P1Z9 1646 aa38.41■■■■□ 3.74
CPSF7-225ENST00000545934 ABCC9O60706 1549 aa38.4■■■■□ 3.74
CPSF7-225ENST00000545934 RB1CC1Q8TDY2 1594 aa36.55■■■■□ 3.44
CPSF7-225ENST00000545934 NACADO15069 1562 aa36.26■■■■□ 3.39
CPSF7-225ENST00000545934 DNAJC5BQ9UF47 199 aa36.22■■■■□ 3.39
CPSF7-225ENST00000545934 UNC13AQ9UPW8 1703 aa35.92■■■■□ 3.34
CPSF7-225ENST00000545934 MYO15BQ96JP2 1530 aa35.73■■■■□ 3.31
CPSF7-225ENST00000545934 DCAF8L2P0C7V8 631 aa35.71■■■■□ 3.31
CPSF7-225ENST00000545934 PABPN1Q86U42 306 aaKnown RBP eCLIP35.63■■■■□ 3.29
CPSF7-225ENST00000545934 BICRAQ9NZM4 1560 aa35.57■■■■□ 3.28
CPSF7-225ENST00000545934 ZCCHC6Q5VYS8 1495 aaKnown RBP35.22■■■■□ 3.23
CPSF7-225ENST00000545934 DCAF1Q9Y4B6 1507 aa35.19■■■■□ 3.22
CPSF7-225ENST00000545934 SHROOM4Q9ULL8 1493 aa35.04■■■■□ 3.2
CPSF7-225ENST00000545934 SCRIBQ14160 1630 aa34.84■■■■□ 3.17
CPSF7-225ENST00000545934 CC2D2AQ9P2K1 1620 aa34.79■■■■□ 3.16
CPSF7-225ENST00000545934 EIF4G1Q04637 1599 aaKnown RBP34.66■■■■□ 3.14
CPSF7-225ENST00000545934 CECR2Q9BXF3 1484 aa34.64■■■■□ 3.14
CPSF7-225ENST00000545934 NCAPD3P42695 1498 aa33.44■■■□□ 2.94
CPSF7-225ENST00000545934 DNAJC5Q9H3Z4 198 aa33.42■■■□□ 2.94
CPSF7-225ENST00000545934 ATAD2BQ9ULI0 1458 aa33.29■■■□□ 2.92
CPSF7-225ENST00000545934 SMARCA4P51532 1647 aa33.28■■■□□ 2.92
CPSF7-225ENST00000545934 CUX2O14529 1486 aa33.25■■■□□ 2.91
CPSF7-225ENST00000545934 HMGXB3Q12766 1538 aa33.23■■■□□ 2.91
CPSF7-225ENST00000545934 SMARCA2P51531 1590 aa33.21■■■□□ 2.91
CPSF7-225ENST00000545934 ERCC6Q03468 1493 aa33.13■■■□□ 2.89
CPSF7-225ENST00000545934 BAZ1AQ9NRL2 1556 aaPredicted RBP33.04■■■□□ 2.88
CPSF7-225ENST00000545934 PEG3Q9GZU2 1588 aa33■■■□□ 2.87
CPSF7-225ENST00000545934 NESP48681 1621 aa32.96■■■□□ 2.87
CPSF7-225ENST00000545934 BAZ1BQ9UIG0 1483 aaKnown RBP32.93■■■□□ 2.86
CPSF7-225ENST00000545934 THOC2Q8NI27 1593 aaKnown RBP32.79■■■□□ 2.84
CPSF7-225ENST00000545934 LAMC3Q9Y6N6 1575 aa32.77■■■□□ 2.84
CPSF7-225ENST00000545934 MROH2BQ7Z745 1585 aa32.76■■■□□ 2.84
CPSF7-225ENST00000545934 KIF21AQ7Z4S6 1674 aa32.66■■■□□ 2.82
CPSF7-225ENST00000545934 PDS5BQ9NTI5 1447 aa32.48■■■□□ 2.79
CPSF7-225ENST00000545934 WIZO95785 1651 aa32.4■■■□□ 2.78
CPSF7-225ENST00000545934 CADPSQ9ULU8 1353 aa32.35■■■□□ 2.77
CPSF7-225ENST00000545934 MRC2Q9UBG0 1479 aa32.25■■■□□ 2.75
CPSF7-225ENST00000545934 WDR62O43379 1518 aa32.25■■■□□ 2.75
CPSF7-225ENST00000545934 CEP164Q9UPV0 1460 aa32.06■■■□□ 2.72
CPSF7-225ENST00000545934 FANCD2Q9BXW9 1451 aa32■■■□□ 2.71
CPSF7-225ENST00000545934 CFTRP13569 1480 aa31.99■■■□□ 2.71
CPSF7-225ENST00000545934 RSF1Q96T23 1441 aaPredicted RBP31.96■■■□□ 2.71
CPSF7-225ENST00000545934 TOP2AP11388 1531 aaKnown RBP31.95■■■□□ 2.71
CPSF7-225ENST00000545934 PRDM2Q13029 1718 aa31.87■■■□□ 2.69
CPSF7-225ENST00000545934 URB2Q14146 1524 aaKnown RBP31.8■■■□□ 2.68
CPSF7-225ENST00000545934 TRIM41Q8WV44 630 aa31.73■■■□□ 2.67
CPSF7-225ENST00000545934 OSCARQ8IYS5 282 aa31.57■■■□□ 2.64
CPSF7-225ENST00000545934 CCDC88BA6NC98 1476 aa31.54■■■□□ 2.64
CPSF7-225ENST00000545934 IFT140Q96RY7 1462 aa31.44■■■□□ 2.62
CPSF7-225ENST00000545934 ZNF608Q9ULD9 1512 aaPredicted RBP31.42■■■□□ 2.62
CPSF7-225ENST00000545934 TOPBP1Q92547 1522 aa31.41■■■□□ 2.62
CPSF7-225ENST00000545934 RIMBP3CA6NJZ7 1639 aa31.36■■■□□ 2.61
CPSF7-225ENST00000545934 RIMBP3BA6NNM3 1639 aa31.36■■■□□ 2.61
CPSF7-225ENST00000545934 RIMBP3Q9UFD9 1639 aa31.36■■■□□ 2.61
CPSF7-225ENST00000545934 ABCC8Q09428 1581 aa31.32■■■□□ 2.6
CPSF7-225ENST00000545934 EIF4G3O43432 1585 aaKnown RBP31.31■■■□□ 2.6
CPSF7-225ENST00000545934 DNMBPQ6XZF7 1577 aa31.3■■■□□ 2.6
CPSF7-225ENST00000545934 TARBP1Q13395 1621 aaKnown RBP31.24■■■□□ 2.59
CPSF7-225ENST00000545934 ARHGEF11O15085 1522 aa31.19■■■□□ 2.58
CPSF7-225ENST00000545934 CHD1O14646 1710 aa31.18■■■□□ 2.58
CPSF7-225ENST00000545934 POLA1P09884 1462 aaPredicted RBP31.07■■■□□ 2.56
CPSF7-225ENST00000545934 AQRO60306 1485 aaKnown RBP eCLIP31.06■■■□□ 2.564e-7■■■■■ 40.5
CPSF7-225ENST00000545934 WDR97A6NE52 1622 aa30.92■■■□□ 2.54
CPSF7-225ENST00000545934 RAD54L2Q9Y4B4 1467 aa30.91■■■□□ 2.54
CPSF7-225ENST00000545934 ARAP1Q96P48 1450 aa30.86■■■□□ 2.53
CPSF7-225ENST00000545934 SOGA1O94964 1423 aa30.85■■■□□ 2.53
CPSF7-225ENST00000545934 FGD5Q6ZNL6 1462 aa30.82■■■□□ 2.53
CPSF7-225ENST00000545934 CYB5RLQ6IPT4 315 aa30.82■■■□□ 2.52
CPSF7-225ENST00000545934 CUX1P39880 1505 aa30.8■■■□□ 2.52
CPSF7-225ENST00000545934 TDRD9Q8NDG6 1382 aaKnown RBP30.79■■■□□ 2.52
CPSF7-225ENST00000545934 CLASP1Q7Z460 1538 aa30.77■■■□□ 2.52
CPSF7-225ENST00000545934 SNAPC4Q5SXM2 1469 aa30.76■■■□□ 2.52
CPSF7-225ENST00000545934 FBLN2P98095 1184 aa30.76■■■□□ 2.51
CPSF7-225ENST00000545934 MAGI1Q96QZ7 1491 aaPredicted RBP30.7■■■□□ 2.51
CPSF7-225ENST00000545934 SYNJ1O43426 1573 aa30.67■■■□□ 2.5
CPSF7-225ENST00000545934 PBRM1Q86U86 1689 aa30.67■■■□□ 2.5
CPSF7-225ENST00000545934 GRIN2BQ13224 1484 aa30.65■■■□□ 2.5
CPSF7-225ENST00000545934 SYNJ2O15056 1496 aa30.59■■■□□ 2.49
CPSF7-225ENST00000545934 CHMP7Q8WUX9 453 aaPredicted RBP30.55■■■□□ 2.48
CPSF7-225ENST00000545934 ABCA5Q8WWZ7 1642 aa30.55■■■□□ 2.48
CPSF7-225ENST00000545934 GAPVD1Q14C86 1478 aa30.5■■■□□ 2.47
CPSF7-225ENST00000545934 TRHP20396 242 aaPredicted RBP30.5■■■□□ 2.47
CPSF7-225ENST00000545934 ABCA10Q8WWZ4 1543 aa30.49■■■□□ 2.47
CPSF7-225ENST00000545934 BIVM-ERCC5R4GMW8 1640 aa30.34■■■□□ 2.45
CPSF7-225ENST00000545934 ADAMTS12P58397 1594 aa30.29■■■□□ 2.44
CPSF7-225ENST00000545934 TOP2BQ02880 1626 aa30.29■■■□□ 2.44
CPSF7-225ENST00000545934 GRIN2AQ12879 1464 aa30.28■■■□□ 2.44
CPSF7-225ENST00000545934 WRNQ14191 1432 aaPredicted RBP eCLIP30.24■■■□□ 2.43
CPSF7-225ENST00000545934 CEP170Q5SW79 1584 aa30.24■■■□□ 2.43
CPSF7-225ENST00000545934 ERCC6L2Q5T890 1561 aa30.24■■■□□ 2.43
CPSF7-225ENST00000545934 NUP160Q12769 1436 aa30.21■■■□□ 2.43
CPSF7-225ENST00000545934 SHROOM2Q13796 1616 aa30.2■■■□□ 2.43
CPSF7-225ENST00000545934 SUPT5HO00267 1087 aaKnown RBP30.18■■■□□ 2.42
CPSF7-225ENST00000545934 ERICH3Q5RHP9 1530 aa30.12■■■□□ 2.41
CPSF7-225ENST00000545934 FHAD1B1AJZ9 1412 aa30.11■■■□□ 2.41
CPSF7-225ENST00000545934 KIF13AQ9H1H9 1805 aa29.96■■■□□ 2.39
CPSF7-225ENST00000545934 RUSC2Q8N2Y8 1516 aa29.9■■■□□ 2.38
CPSF7-225ENST00000545934 PRG4Q92954 1404 aaPredicted RBP29.85■■■□□ 2.37
CPSF7-225ENST00000545934 JPH4Q96JJ6 628 aa29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms