RNA–Protein interactions for RNA: ENST00000545738.6

LIMS2-217, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 5 BASIC

Gene LIMS2, Length 1,730 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-217ENST00000545738 NISCHQ9Y2I1 1504 aa39.02■■■■□ 3.84
LIMS2-217ENST00000545738 CCDC180Q9P1Z9 1646 aa34.43■■■■□ 3.1
LIMS2-217ENST00000545738 ABCC9O60706 1549 aa33.35■■■□□ 2.93
LIMS2-217ENST00000545738 ZCCHC6Q5VYS8 1495 aaKnown RBP32.62■■■□□ 2.81
LIMS2-217ENST00000545738 DCAF8L2P0C7V8 631 aa32.36■■■□□ 2.77
LIMS2-217ENST00000545738 DCAF1Q9Y4B6 1507 aa32.24■■■□□ 2.75
LIMS2-217ENST00000545738 NACADO15069 1562 aa32.24■■■□□ 2.75
LIMS2-217ENST00000545738 MYO15BQ96JP2 1530 aa32.18■■■□□ 2.74
LIMS2-217ENST00000545738 RB1CC1Q8TDY2 1594 aa32.17■■■□□ 2.74
LIMS2-217ENST00000545738 UNC13AQ9UPW8 1703 aa31.62■■■□□ 2.65
LIMS2-217ENST00000545738 SCRIBQ14160 1630 aa31.55■■■□□ 2.64
LIMS2-217ENST00000545738 BICRAQ9NZM4 1560 aa31.34■■■□□ 2.61
LIMS2-217ENST00000545738 PABPN1Q86U42 306 aaKnown RBP eCLIP31.24■■■□□ 2.59
LIMS2-217ENST00000545738 SHROOM4Q9ULL8 1493 aa31.17■■■□□ 2.58
LIMS2-217ENST00000545738 CECR2Q9BXF3 1484 aa30.43■■■□□ 2.46
LIMS2-217ENST00000545738 EIF4G1Q04637 1599 aaKnown RBP30.41■■■□□ 2.46
LIMS2-217ENST00000545738 DNAJC5BQ9UF47 199 aa30.29■■■□□ 2.44
LIMS2-217ENST00000545738 SMARCA4P51532 1647 aa30.19■■■□□ 2.42
LIMS2-217ENST00000545738 CC2D2AQ9P2K1 1620 aa30.18■■■□□ 2.42
LIMS2-217ENST00000545738 BAZ1AQ9NRL2 1556 aaPredicted RBP30.16■■■□□ 2.42
LIMS2-217ENST00000545738 MROH2BQ7Z745 1585 aa30.14■■■□□ 2.42
LIMS2-217ENST00000545738 RSF1Q96T23 1441 aaPredicted RBP29.93■■■□□ 2.38
LIMS2-217ENST00000545738 ATAD2BQ9ULI0 1458 aa29.9■■■□□ 2.38
LIMS2-217ENST00000545738 PEG3Q9GZU2 1588 aa29.87■■■□□ 2.37
LIMS2-217ENST00000545738 WIZO95785 1651 aa29.85■■■□□ 2.37
LIMS2-217ENST00000545738 SMARCA2P51531 1590 aa29.81■■■□□ 2.36
LIMS2-217ENST00000545738 NCAPD3P42695 1498 aa29.78■■■□□ 2.36
LIMS2-217ENST00000545738 HMGXB3Q12766 1538 aa29.67■■■□□ 2.34
LIMS2-217ENST00000545738 BAZ1BQ9UIG0 1483 aaKnown RBP29.64■■■□□ 2.34
LIMS2-217ENST00000545738 SUPT5HO00267 1087 aaKnown RBP29.48■■■□□ 2.31
LIMS2-217ENST00000545738 TOP2AP11388 1531 aaKnown RBP29.48■■■□□ 2.31
LIMS2-217ENST00000545738 CCDC88BA6NC98 1476 aa29.16■■■□□ 2.26
LIMS2-217ENST00000545738 NESP48681 1621 aa29.05■■■□□ 2.24
LIMS2-217ENST00000545738 CADPSQ9ULU8 1353 aa28.93■■■□□ 2.22
LIMS2-217ENST00000545738 LAMC3Q9Y6N6 1575 aa28.9■■■□□ 2.22
LIMS2-217ENST00000545738 CFTRP13569 1480 aa28.89■■■□□ 2.21
LIMS2-217ENST00000545738 PRDM2Q13029 1718 aa28.7■■■□□ 2.18
LIMS2-217ENST00000545738 KIF21AQ7Z4S6 1674 aa28.69■■■□□ 2.18
LIMS2-217ENST00000545738 PDS5BQ9NTI5 1447 aa28.64■■■□□ 2.18
LIMS2-217ENST00000545738 FANCD2Q9BXW9 1451 aa28.62■■■□□ 2.17
LIMS2-217ENST00000545738 ERCC6Q03468 1493 aa28.6■■■□□ 2.17
LIMS2-217ENST00000545738 CEP164Q9UPV0 1460 aa28.51■■■□□ 2.15
LIMS2-217ENST00000545738 THOC2Q8NI27 1593 aaKnown RBP28.48■■■□□ 2.15
LIMS2-217ENST00000545738 MRC2Q9UBG0 1479 aa28.38■■■□□ 2.13
LIMS2-217ENST00000545738 URB2Q14146 1524 aaKnown RBP28.37■■■□□ 2.13
LIMS2-217ENST00000545738 WDR62O43379 1518 aa28.32■■■□□ 2.12
LIMS2-217ENST00000545738 ABCC8Q09428 1581 aa28.3■■■□□ 2.12
LIMS2-217ENST00000545738 CUX1P39880 1505 aa28.24■■■□□ 2.11
LIMS2-217ENST00000545738 TOPBP1Q92547 1522 aa28.23■■■□□ 2.11
LIMS2-217ENST00000545738 DNMBPQ6XZF7 1577 aa28.21■■■□□ 2.11
LIMS2-217ENST00000545738 SYNJ1O43426 1573 aa28.16■■■□□ 2.1
LIMS2-217ENST00000545738 WRNQ14191 1432 aaPredicted RBP eCLIP28.15■■■□□ 2.1
LIMS2-217ENST00000545738 CUX2O14529 1486 aa28.12■■■□□ 2.09
LIMS2-217ENST00000545738 TOP2BQ02880 1626 aa28.07■■■□□ 2.08
LIMS2-217ENST00000545738 BIVM-ERCC5R4GMW8 1640 aa28.06■■■□□ 2.08
LIMS2-217ENST00000545738 POLA1P09884 1462 aaPredicted RBP28.04■■■□□ 2.08
LIMS2-217ENST00000545738 FGD5Q6ZNL6 1462 aa28.03■■■□□ 2.08
LIMS2-217ENST00000545738 RAD54L2Q9Y4B4 1467 aa27.95■■■□□ 2.07
LIMS2-217ENST00000545738 TARBP1Q13395 1621 aaKnown RBP27.93■■■□□ 2.06
LIMS2-217ENST00000545738 IFT140Q96RY7 1462 aa27.88■■■□□ 2.05
LIMS2-217ENST00000545738 SOGA1O94964 1423 aa27.87■■■□□ 2.05
LIMS2-217ENST00000545738 ZNF608Q9ULD9 1512 aaPredicted RBP27.85■■■□□ 2.05
LIMS2-217ENST00000545738 WDR97A6NE52 1622 aa27.82■■■□□ 2.04
LIMS2-217ENST00000545738 CHIC1Q5VXU3 224 aa27.8■■■□□ 2.04
LIMS2-217ENST00000545738 ABCA10Q8WWZ4 1543 aa27.76■■■□□ 2.03
LIMS2-217ENST00000545738 TRIM41Q8WV44 630 aa27.74■■■□□ 2.03
LIMS2-217ENST00000545738 EIF4G3O43432 1585 aaKnown RBP27.72■■■□□ 2.03
LIMS2-217ENST00000545738 TDRD9Q8NDG6 1382 aaKnown RBP27.72■■■□□ 2.03
LIMS2-217ENST00000545738 AQRO60306 1485 aaKnown RBP eCLIP27.71■■■□□ 2.03
LIMS2-217ENST00000545738 ABCA5Q8WWZ7 1642 aa27.65■■■□□ 2.02
LIMS2-217ENST00000545738 GAPVD1Q14C86 1478 aa27.57■■■□□ 2
LIMS2-217ENST00000545738 RUSC2Q8N2Y8 1516 aa27.55■■■□□ 2
LIMS2-217ENST00000545738 PBRM1Q86U86 1689 aa27.53■■■□□ 2
LIMS2-217ENST00000545738 GRIN2BQ13224 1484 aa27.48■■□□□ 1.99
LIMS2-217ENST00000545738 KIF27Q86VH2 1401 aa27.47■■□□□ 1.99
LIMS2-217ENST00000545738 SNAPC4Q5SXM2 1469 aa27.45■■□□□ 1.98
LIMS2-217ENST00000545738 ERICH3Q5RHP9 1530 aa27.4■■□□□ 1.98
LIMS2-217ENST00000545738 IGF1RP08069 1367 aa27.38■■□□□ 1.97
LIMS2-217ENST00000545738 MAGI1Q96QZ7 1491 aaPredicted RBP27.35■■□□□ 1.97
LIMS2-217ENST00000545738 ADAMTS12P58397 1594 aa27.34■■□□□ 1.97
LIMS2-217ENST00000545738 CHD1O14646 1710 aa27.29■■□□□ 1.96
LIMS2-217ENST00000545738 SYNJ2O15056 1496 aa27.26■■□□□ 1.95
LIMS2-217ENST00000545738 FAM9AQ8IZU1 332 aaPredicted RBP27.26■■□□□ 1.95
LIMS2-217ENST00000545738 FHAD1B1AJZ9 1412 aa27.24■■□□□ 1.95
LIMS2-217ENST00000545738 CUL7Q14999 1698 aa27.23■■□□□ 1.95
LIMS2-217ENST00000545738 FBLN2P98095 1184 aa27.2■■□□□ 1.94
LIMS2-217ENST00000545738 EEA1Q15075 1411 aa27.19■■□□□ 1.94
LIMS2-217ENST00000545738 CARMIL1Q5VZK9 1371 aa27.18■■□□□ 1.94
LIMS2-217ENST00000545738 GRIN2AQ12879 1464 aa27.17■■□□□ 1.94
LIMS2-217ENST00000545738 CHMP7Q8WUX9 453 aaPredicted RBP27.16■■□□□ 1.94
LIMS2-217ENST00000545738 CSRNP3Q8WYN3 585 aa27.16■■□□□ 1.94
LIMS2-217ENST00000545738 PRXQ9BXM0 1461 aa27.15■■□□□ 1.94
LIMS2-217ENST00000545738 CEP170Q5SW79 1584 aa27.08■■□□□ 1.93
LIMS2-217ENST00000545738 RAPGEF2Q9Y4G8 1499 aa27.07■■□□□ 1.92
LIMS2-217ENST00000545738 NUP160Q12769 1436 aa27.04■■□□□ 1.92
LIMS2-217ENST00000545738 OSCARQ8IYS5 282 aa27.02■■□□□ 1.92
LIMS2-217ENST00000545738 KIF21BO75037 1637 aa26.99■■□□□ 1.91
LIMS2-217ENST00000545738 CLASP1Q7Z460 1538 aa26.99■■□□□ 1.91
LIMS2-217ENST00000545738 EHMT2Q96KQ7 1210 aa26.92■■□□□ 1.9
LIMS2-217ENST00000545738 KIAA0586Q9BVV6 1533 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 158.8 ms