RNA–Protein interactions for RNA: ENST00000544891.6

NECAP1-207, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 4,899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-207ENST00000544891 NISCHQ9Y2I1 1504 aa17.51■□□□□ 0.39
NECAP1-207ENST00000544891 CCDC180Q9P1Z9 1646 aa15.41■□□□□ 0.06
NECAP1-207ENST00000544891 DCAF8L2P0C7V8 631 aa15.34■□□□□ 0.05
NECAP1-207ENST00000544891 ZCCHC6Q5VYS8 1495 aaKnown RBP14.8□□□□□ -0.04
NECAP1-207ENST00000544891 DCAF1Q9Y4B6 1507 aa14.66□□□□□ -0.06
NECAP1-207ENST00000544891 SUPT5HO00267 1087 aaKnown RBP14.57□□□□□ -0.08
NECAP1-207ENST00000544891 MYO15BQ96JP2 1530 aa14.43□□□□□ -0.1
NECAP1-207ENST00000544891 MYT1Q01538 1121 aa14.28□□□□□ -0.12
NECAP1-207ENST00000544891 SHROOM4Q9ULL8 1493 aa14.21□□□□□ -0.13
NECAP1-207ENST00000544891 NACADO15069 1562 aa14.21□□□□□ -0.13
NECAP1-207ENST00000544891 PELP1Q8IZL8 1130 aaKnown RBP14.2□□□□□ -0.14
NECAP1-207ENST00000544891 APLP2Q06481 763 aa14.16□□□□□ -0.14
NECAP1-207ENST00000544891 FAM9AQ8IZU1 332 aaPredicted RBP14.13□□□□□ -0.15
NECAP1-207ENST00000544891 RB1CC1Q8TDY2 1594 aa14.03□□□□□ -0.16
NECAP1-207ENST00000544891 ABCC9O60706 1549 aa13.96□□□□□ -0.18
NECAP1-207ENST00000544891 SCRIBQ14160 1630 aa13.94□□□□□ -0.18
NECAP1-207ENST00000544891 ZEB1P37275 1124 aaPredicted RBP13.8□□□□□ -0.2
NECAP1-207ENST00000544891 EHMT2Q96KQ7 1210 aa13.77□□□□□ -0.21
NECAP1-207ENST00000544891 TTBK1Q5TCY1 1321 aaPredicted RBP13.74□□□□□ -0.21
NECAP1-207ENST00000544891 TRIM41Q8WV44 630 aa13.69□□□□□ -0.22
NECAP1-207ENST00000544891 UNC13AQ9UPW8 1703 aa13.64□□□□□ -0.23
NECAP1-207ENST00000544891 CENPBP07199 599 aaPredicted RBP13.61□□□□□ -0.23
NECAP1-207ENST00000544891 BAZ1AQ9NRL2 1556 aaPredicted RBP13.58□□□□□ -0.23
NECAP1-207ENST00000544891 RSF1Q96T23 1441 aaPredicted RBP13.58□□□□□ -0.24
NECAP1-207ENST00000544891 CCER1Q8TC90 406 aaPredicted RBP13.56□□□□□ -0.24
NECAP1-207ENST00000544891 PCGF6Q9BYE7 350 aa13.56□□□□□ -0.24
NECAP1-207ENST00000544891 UBTFP17480 764 aaKnown RBP13.5□□□□□ -0.25
NECAP1-207ENST00000544891 SMARCA4P51532 1647 aa13.47□□□□□ -0.25
NECAP1-207ENST00000544891 MROH2BQ7Z745 1585 aa13.43□□□□□ -0.26
NECAP1-207ENST00000544891 TOP2AP11388 1531 aaKnown RBP13.41□□□□□ -0.26
NECAP1-207ENST00000544891 BICRAQ9NZM4 1560 aa13.4□□□□□ -0.26
NECAP1-207ENST00000544891 CECR2Q9BXF3 1484 aa13.38□□□□□ -0.27
NECAP1-207ENST00000544891 ATP1B4Q9UN42 357 aaPredicted RBP13.38□□□□□ -0.27
NECAP1-207ENST00000544891 WIZO95785 1651 aa13.38□□□□□ -0.27
NECAP1-207ENST00000544891 SLC24A1O60721 1099 aa13.36□□□□□ -0.27
NECAP1-207ENST00000544891 PEG3Q9GZU2 1588 aa13.35□□□□□ -0.27
NECAP1-207ENST00000544891 CHIC1Q5VXU3 224 aa13.35□□□□□ -0.27
NECAP1-207ENST00000544891 ERICH6Q7L0X2 663 aa13.34□□□□□ -0.27
NECAP1-207ENST00000544891 NEFLP07196 543 aa13.32□□□□□ -0.28
NECAP1-207ENST00000544891 RANGAP1P46060 587 aaPredicted RBP13.32□□□□□ -0.28
NECAP1-207ENST00000544891 SMARCA2P51531 1590 aa13.27□□□□□ -0.29
NECAP1-207ENST00000544891 TRIM26Q12899 539 aaPredicted RBP13.25□□□□□ -0.29
NECAP1-207ENST00000544891 EIF4G1Q04637 1599 aaKnown RBP13.22□□□□□ -0.29
NECAP1-207ENST00000544891 CCDC88BA6NC98 1476 aa13.12□□□□□ -0.31
NECAP1-207ENST00000544891 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
NECAP1-207ENST00000544891 BAZ1BQ9UIG0 1483 aaKnown RBP13.1□□□□□ -0.31
NECAP1-207ENST00000544891 ATAD2BQ9ULI0 1458 aa13.09□□□□□ -0.31
NECAP1-207ENST00000544891 PABPN1Q86U42 306 aaKnown RBP eCLIP13.07□□□□□ -0.32
NECAP1-207ENST00000544891 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.01□□□□□ -0.33
NECAP1-207ENST00000544891 HNRNPUL2Q1KMD3 747 aaKnown RBP13.01□□□□□ -0.33
NECAP1-207ENST00000544891 NCAPD3P42695 1498 aa12.99□□□□□ -0.33
NECAP1-207ENST00000544891 HRCP23327 699 aa12.98□□□□□ -0.33
NECAP1-207ENST00000544891 PRDM2Q13029 1718 aa12.97□□□□□ -0.33
NECAP1-207ENST00000544891 EEA1Q15075 1411 aa12.96□□□□□ -0.33
NECAP1-207ENST00000544891 MYT1LQ9UL68 1186 aa12.95□□□□□ -0.34
NECAP1-207ENST00000544891 YTHDC1Q96MU7 727 aaKnown RBP12.91□□□□□ -0.34
NECAP1-207ENST00000544891 DAXXQ9UER7 740 aaPredicted RBP12.9□□□□□ -0.34
NECAP1-207ENST00000544891 ITGAEP38570 1179 aa12.88□□□□□ -0.35
NECAP1-207ENST00000544891 PPARGC1BQ86YN6 1023 aaKnown RBP12.86□□□□□ -0.35
NECAP1-207ENST00000544891 BIVM-ERCC5R4GMW8 1640 aa12.85□□□□□ -0.35
NECAP1-207ENST00000544891 ABCC8Q09428 1581 aa12.85□□□□□ -0.35
NECAP1-207ENST00000544891 WRNQ14191 1432 aaPredicted RBP eCLIP12.84□□□□□ -0.35
NECAP1-207ENST00000544891 LOC105371045A0A1W2PR82 267 aa12.82□□□□□ -0.36
NECAP1-207ENST00000544891 TOP2BQ02880 1626 aa12.81□□□□□ -0.36
NECAP1-207ENST00000544891 CC2D2AQ9P2K1 1620 aa12.78□□□□□ -0.36
NECAP1-207ENST00000544891 POLR3GLQ9BT43 218 aa12.77□□□□□ -0.36
NECAP1-207ENST00000544891 KIF21BO75037 1637 aa12.77□□□□□ -0.37
NECAP1-207ENST00000544891 SYNJ1O43426 1573 aa12.75□□□□□ -0.37
NECAP1-207ENST00000544891 CFTRP13569 1480 aa12.75□□□□□ -0.37
NECAP1-207ENST00000544891 GOLGA3Q08378 1498 aa12.71□□□□□ -0.37
NECAP1-207ENST00000544891 CEP164Q9UPV0 1460 aa12.69□□□□□ -0.38
NECAP1-207ENST00000544891 FAM50AQ14320 339 aaKnown RBP12.69□□□□□ -0.38
NECAP1-207ENST00000544891 TNIKQ9UKE5 1360 aa12.67□□□□□ -0.38
NECAP1-207ENST00000544891 DIEXFQ68CQ4 756 aaKnown RBP12.67□□□□□ -0.38
NECAP1-207ENST00000544891 TRIM52Q96A61 297 aa12.65□□□□□ -0.38
NECAP1-207ENST00000544891 ERICH3Q5RHP9 1530 aa12.64□□□□□ -0.39
NECAP1-207ENST00000544891 CADPSQ9ULU8 1353 aa12.62□□□□□ -0.39
NECAP1-207ENST00000544891 LAMC3Q9Y6N6 1575 aa12.62□□□□□ -0.39
NECAP1-207ENST00000544891 CSRNP3Q8WYN3 585 aa12.61□□□□□ -0.39
NECAP1-207ENST00000544891 SOGA1O94964 1423 aa12.61□□□□□ -0.39
NECAP1-207ENST00000544891 CUX1P39880 1505 aa12.6□□□□□ -0.39
NECAP1-207ENST00000544891 SLC4A1APQ9BWU0 796 aaKnown RBP12.59□□□□□ -0.39
NECAP1-207ENST00000544891 CDK11AQ9UQ88 783 aaPredicted RBP12.59□□□□□ -0.39
NECAP1-207ENST00000544891 ANP32CO43423 234 aa12.57□□□□□ -0.4
NECAP1-207ENST00000544891 CLSPNQ9HAW4 1339 aa12.57□□□□□ -0.4
NECAP1-207ENST00000544891 RTL5Q5HYW3 569 aaPredicted RBP12.56□□□□□ -0.4
NECAP1-207ENST00000544891 CEP162Q5TB80 1403 aa12.55□□□□□ -0.4
NECAP1-207ENST00000544891 DNMBPQ6XZF7 1577 aa12.55□□□□□ -0.4
NECAP1-207ENST00000544891 KIF27Q86VH2 1401 aa12.55□□□□□ -0.4
NECAP1-207ENST00000544891 ZNF316A6NFI3 1004 aaPredicted RBP12.55□□□□□ -0.4
NECAP1-207ENST00000544891 FANCD2Q9BXW9 1451 aa12.5□□□□□ -0.41
NECAP1-207ENST00000544891 ZBTB47Q9UFB7 747 aaPredicted RBP12.49□□□□□ -0.41
NECAP1-207ENST00000544891 RUSC2Q8N2Y8 1516 aa12.48□□□□□ -0.41
NECAP1-207ENST00000544891 NEUROD1Q13562 356 aa12.48□□□□□ -0.41
NECAP1-207ENST00000544891 NEFMP07197 916 aa12.48□□□□□ -0.41
NECAP1-207ENST00000544891 CUL7Q14999 1698 aa12.46□□□□□ -0.41
NECAP1-207ENST00000544891 PRXQ9BXM0 1461 aa12.46□□□□□ -0.41
NECAP1-207ENST00000544891 CNGB1Q14028 1251 aaPredicted RBP12.45□□□□□ -0.42
NECAP1-207ENST00000544891 PDS5BQ9NTI5 1447 aa12.45□□□□□ -0.42
NECAP1-207ENST00000544891 FBLN2P98095 1184 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms