RNA–Protein interactions for RNA: ENST00000544093.5

CHFR-222, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 942 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-222ENST00000544093 NISCHQ9Y2I1 1504 aa57.05■■■■■ 6.72
CHFR-222ENST00000544093 CCDC180Q9P1Z9 1646 aa50.97■■■■■ 5.75
CHFR-222ENST00000544093 ABCC9O60706 1549 aa50.03■■■■■ 5.6
CHFR-222ENST00000544093 RB1CC1Q8TDY2 1594 aa48.12■■■■■ 5.29
CHFR-222ENST00000544093 NACADO15069 1562 aa47.99■■■■■ 5.27
CHFR-222ENST00000544093 DCAF8L2P0C7V8 631 aa47.71■■■■■ 5.23
CHFR-222ENST00000544093 MYO15BQ96JP2 1530 aa47.63■■■■■ 5.22
CHFR-222ENST00000544093 ZCCHC6Q5VYS8 1495 aaKnown RBP47.46■■■■■ 5.19
CHFR-222ENST00000544093 DCAF1Q9Y4B6 1507 aa47.28■■■■■ 5.16
CHFR-222ENST00000544093 UNC13AQ9UPW8 1703 aa46.96■■■■■ 5.11
CHFR-222ENST00000544093 PABPN1Q86U42 306 aaKnown RBP eCLIP46.64■■■■■ 5.06
CHFR-222ENST00000544093 BICRAQ9NZM4 1560 aa46.57■■■■■ 5.05
CHFR-222ENST00000544093 SCRIBQ14160 1630 aa46.35■■■■■ 5.01
CHFR-222ENST00000544093 SHROOM4Q9ULL8 1493 aa46.25■■■■■ 4.99
CHFR-222ENST00000544093 DNAJC5BQ9UF47 199 aa46.14■■■■■ 4.98
CHFR-222ENST00000544093 EIF4G1Q04637 1599 aaKnown RBP45.42■■■■■ 4.86
CHFR-222ENST00000544093 CC2D2AQ9P2K1 1620 aa45.3■■■■■ 4.84
CHFR-222ENST00000544093 CECR2Q9BXF3 1484 aa45.05■■■■■ 4.8
CHFR-222ENST00000544093 SMARCA4P51532 1647 aa44.35■■■■■ 4.69
CHFR-222ENST00000544093 BAZ1AQ9NRL2 1556 aaPredicted RBP44.3■■■■■ 4.68
CHFR-222ENST00000544093 NCAPD3P42695 1498 aa44.24■■■■■ 4.67
CHFR-222ENST00000544093 SMARCA2P51531 1590 aa44.18■■■■■ 4.66
CHFR-222ENST00000544093 ATAD2BQ9ULI0 1458 aa44.17■■■■■ 4.66
CHFR-222ENST00000544093 HMGXB3Q12766 1538 aa44.03■■■■■ 4.64
CHFR-222ENST00000544093 PEG3Q9GZU2 1588 aa43.97■■■■■ 4.63
CHFR-222ENST00000544093 MROH2BQ7Z745 1585 aa43.89■■■■■ 4.62
CHFR-222ENST00000544093 BAZ1BQ9UIG0 1483 aaKnown RBP43.83■■■■■ 4.61
CHFR-222ENST00000544093 WIZO95785 1651 aa43.42■■■■■ 4.54
CHFR-222ENST00000544093 RSF1Q96T23 1441 aaPredicted RBP43.3■■■■■ 4.52
CHFR-222ENST00000544093 ERCC6Q03468 1493 aa43.24■■■■■ 4.51
CHFR-222ENST00000544093 LAMC3Q9Y6N6 1575 aa43.17■■■■■ 4.5
CHFR-222ENST00000544093 NESP48681 1621 aa43.17■■■■■ 4.5
CHFR-222ENST00000544093 TOP2AP11388 1531 aaKnown RBP43■■■■■ 4.47
CHFR-222ENST00000544093 CUX2O14529 1486 aa42.95■■■■■ 4.47
CHFR-222ENST00000544093 CADPSQ9ULU8 1353 aa42.91■■■■■ 4.46
CHFR-222ENST00000544093 PDS5BQ9NTI5 1447 aa42.88■■■■■ 4.46
CHFR-222ENST00000544093 KIF21AQ7Z4S6 1674 aa42.73■■■■■ 4.43
CHFR-222ENST00000544093 THOC2Q8NI27 1593 aaKnown RBP42.68■■■■■ 4.42
CHFR-222ENST00000544093 CFTRP13569 1480 aa42.6■■■■■ 4.41
CHFR-222ENST00000544093 CCDC88BA6NC98 1476 aa42.44■■■■■ 4.38
CHFR-222ENST00000544093 MRC2Q9UBG0 1479 aa42.43■■■■■ 4.38
CHFR-222ENST00000544093 CEP164Q9UPV0 1460 aa42.43■■■■■ 4.38
CHFR-222ENST00000544093 FANCD2Q9BXW9 1451 aa42.42■■■■■ 4.38
CHFR-222ENST00000544093 PRDM2Q13029 1718 aa42.32■■■■■ 4.37
CHFR-222ENST00000544093 WDR62O43379 1518 aa42.31■■■■■ 4.36
CHFR-222ENST00000544093 URB2Q14146 1524 aaKnown RBP41.97■■■■■ 4.31
CHFR-222ENST00000544093 DNAJC5Q9H3Z4 198 aa41.96■■■■■ 4.31
CHFR-222ENST00000544093 SUPT5HO00267 1087 aaKnown RBP41.86■■■■■ 4.29
CHFR-222ENST00000544093 ABCC8Q09428 1581 aa41.79■■■■■ 4.28
CHFR-222ENST00000544093 TOPBP1Q92547 1522 aa41.69■■■■■ 4.27
CHFR-222ENST00000544093 DNMBPQ6XZF7 1577 aa41.65■■■■■ 4.26
CHFR-222ENST00000544093 IFT140Q96RY7 1462 aa41.56■■■■■ 4.24
CHFR-222ENST00000544093 POLA1P09884 1462 aaPredicted RBP41.31■■■■■ 4.2
CHFR-222ENST00000544093 ZNF608Q9ULD9 1512 aaPredicted RBP41.3■■■■■ 4.2
CHFR-222ENST00000544093 TARBP1Q13395 1621 aaKnown RBP41.27■■■■■ 4.2
CHFR-222ENST00000544093 CUX1P39880 1505 aa41.22■■■■■ 4.19
CHFR-222ENST00000544093 EIF4G3O43432 1585 aaKnown RBP41.2■■■■■ 4.19
CHFR-222ENST00000544093 FGD5Q6ZNL6 1462 aa41.15■■■■■ 4.18
CHFR-222ENST00000544093 SOGA1O94964 1423 aa41.14■■■■■ 4.18
CHFR-222ENST00000544093 RAD54L2Q9Y4B4 1467 aa41.08■■■■■ 4.17
CHFR-222ENST00000544093 OSCARQ8IYS5 282 aa41.07■■■■■ 4.17
CHFR-222ENST00000544093 WDR97A6NE52 1622 aa41.06■■■■■ 4.16
CHFR-222ENST00000544093 AQRO60306 1485 aaKnown RBP eCLIP41.02■■■■■ 4.16
CHFR-222ENST00000544093 TDRD9Q8NDG6 1382 aaKnown RBP40.89■■■■■ 4.14
CHFR-222ENST00000544093 WRNQ14191 1432 aaPredicted RBP eCLIP40.87■■■■■ 4.13
CHFR-222ENST00000544093 BIVM-ERCC5R4GMW8 1640 aa40.85■■■■■ 4.13
CHFR-222ENST00000544093 TOP2BQ02880 1626 aa40.84■■■■■ 4.13
CHFR-222ENST00000544093 ABCA10Q8WWZ4 1543 aa40.78■■■■■ 4.12
CHFR-222ENST00000544093 SYNJ1O43426 1573 aa40.74■■■■■ 4.11
CHFR-222ENST00000544093 GRIN2BQ13224 1484 aa40.74■■■■■ 4.11
CHFR-222ENST00000544093 CHD1O14646 1710 aa40.73■■■■■ 4.11
CHFR-222ENST00000544093 MAGI1Q96QZ7 1491 aaPredicted RBP40.7■■■■■ 4.11
CHFR-222ENST00000544093 GAPVD1Q14C86 1478 aa40.68■■■■■ 4.1
CHFR-222ENST00000544093 SNAPC4Q5SXM2 1469 aa40.68■■■■■ 4.1
CHFR-222ENST00000544093 ABCA5Q8WWZ7 1642 aa40.64■■■■■ 4.1
CHFR-222ENST00000544093 PBRM1Q86U86 1689 aa40.62■■■■■ 4.09
CHFR-222ENST00000544093 FBLN2P98095 1184 aa40.61■■■■■ 4.09
CHFR-222ENST00000544093 SYNJ2O15056 1496 aa40.51■■■■■ 4.08
CHFR-222ENST00000544093 CHMP7Q8WUX9 453 aaPredicted RBP40.51■■■■■ 4.08
CHFR-222ENST00000544093 RIMBP3CA6NJZ7 1639 aa40.42■■■■■ 4.06
CHFR-222ENST00000544093 RIMBP3BA6NNM3 1639 aa40.42■■■■■ 4.06
CHFR-222ENST00000544093 RIMBP3Q9UFD9 1639 aa40.42■■■■■ 4.06
CHFR-222ENST00000544093 ARHGEF11O15085 1522 aa40.38■■■■■ 4.06
CHFR-222ENST00000544093 TRIM41Q8WV44 630 aa40.36■■■■■ 4.05
CHFR-222ENST00000544093 ERICH3Q5RHP9 1530 aa40.32■■■■■ 4.05
CHFR-222ENST00000544093 CLASP1Q7Z460 1538 aa40.3■■■■■ 4.04
CHFR-222ENST00000544093 ADAMTS12P58397 1594 aa40.27■■■■■ 4.04
CHFR-222ENST00000544093 FHAD1B1AJZ9 1412 aa40.21■■■■■ 4.03
CHFR-222ENST00000544093 GRIN2AQ12879 1464 aa40.19■■■■■ 4.03
CHFR-222ENST00000544093 KIF27Q86VH2 1401 aa40.08■■■■■ 4.01
CHFR-222ENST00000544093 NUP160Q12769 1436 aa40.03■■■■■ 4
CHFR-222ENST00000544093 ARAP1Q96P48 1450 aa40■■■■□ 3.99
CHFR-222ENST00000544093 CYB5RLQ6IPT4 315 aa39.98■■■■□ 3.99
CHFR-222ENST00000544093 CEP170Q5SW79 1584 aa39.97■■■■□ 3.99
CHFR-222ENST00000544093 CUL7Q14999 1698 aa39.91■■■■□ 3.98
CHFR-222ENST00000544093 IGF1RP08069 1367 aa39.88■■■■□ 3.97
CHFR-222ENST00000544093 SHROOM2Q13796 1616 aa39.8■■■■□ 3.96
CHFR-222ENST00000544093 RUSC2Q8N2Y8 1516 aa39.69■■■■□ 3.94
CHFR-222ENST00000544093 CARMIL1Q5VZK9 1371 aa39.67■■■■□ 3.94
CHFR-222ENST00000544093 ERCC6L2Q5T890 1561 aa39.61■■■■□ 3.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms