RNA–Protein interactions for RNA: ENST00000543872.6

SMG8-202, Transcript of SMG8, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMG8, Length 3,477 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG8-202ENST00000543872 NISCHQ9Y2I1 1504 aa23.16■■□□□ 1.3
SMG8-202ENST00000543872 HRCP23327 699 aa21.43■■□□□ 1.02
SMG8-202ENST00000543872 PPARGC1BQ86YN6 1023 aaKnown RBP21.19■□□□□ 0.98
SMG8-202ENST00000543872 SUPT5HO00267 1087 aaKnown RBP21.16■□□□□ 0.98
SMG8-202ENST00000543872 PELP1Q8IZL8 1130 aaKnown RBP21.15■□□□□ 0.98
SMG8-202ENST00000543872 PCGF6Q9BYE7 350 aa21.13■□□□□ 0.97
SMG8-202ENST00000543872 SHROOM4Q9ULL8 1493 aa21.13■□□□□ 0.97
SMG8-202ENST00000543872 MYO15BQ96JP2 1530 aa20.69■□□□□ 0.9
SMG8-202ENST00000543872 CHIC1Q5VXU3 224 aa20.64■□□□□ 0.89
SMG8-202ENST00000543872 MYT1Q01538 1121 aa20.47■□□□□ 0.87
SMG8-202ENST00000543872 SCAF1Q9H7N4 1312 aaKnown RBP20.4■□□□□ 0.86
SMG8-202ENST00000543872 LOC105371045A0A1W2PR82 267 aa20.35■□□□□ 0.85
SMG8-202ENST00000543872 TRIM26Q12899 539 aaPredicted RBP20.24■□□□□ 0.83
SMG8-202ENST00000543872 DCAF1Q9Y4B6 1507 aa20.14■□□□□ 0.81
SMG8-202ENST00000543872 ZEB1P37275 1124 aaPredicted RBP20.07■□□□□ 0.8
SMG8-202ENST00000543872 DCAF8L2P0C7V8 631 aa19.96■□□□□ 0.79
SMG8-202ENST00000543872 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
SMG8-202ENST00000543872 NEUROD1Q13562 356 aa19.84■□□□□ 0.77
SMG8-202ENST00000543872 ACIN1Q9UKV3 1341 aaKnown RBP19.84■□□□□ 0.77
SMG8-202ENST00000543872 GTF3C3Q9Y5Q9 886 aa19.79■□□□□ 0.76
SMG8-202ENST00000543872 EHMT2Q96KQ7 1210 aa19.72■□□□□ 0.75
SMG8-202ENST00000543872 ZCCHC6Q5VYS8 1495 aaKnown RBP19.67■□□□□ 0.74
SMG8-202ENST00000543872 FAM9AQ8IZU1 332 aaPredicted RBP19.65■□□□□ 0.74
SMG8-202ENST00000543872 CENPBP07199 599 aaPredicted RBP19.62■□□□□ 0.73
SMG8-202ENST00000543872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.55■□□□□ 0.72
SMG8-202ENST00000543872 DIEXFQ68CQ4 756 aaKnown RBP19.51■□□□□ 0.71
SMG8-202ENST00000543872 CCER1Q8TC90 406 aaPredicted RBP19.5■□□□□ 0.71
SMG8-202ENST00000543872 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
SMG8-202ENST00000543872 YTHDC1Q96MU7 727 aaKnown RBP19.4■□□□□ 0.7
SMG8-202ENST00000543872 TTBK1Q5TCY1 1321 aaPredicted RBP19.36■□□□□ 0.69
SMG8-202ENST00000543872 BCL11AQ9H165 835 aa19.31■□□□□ 0.68
SMG8-202ENST00000543872 PRKCSHP14314 528 aaPredicted RBP19.07■□□□□ 0.64
SMG8-202ENST00000543872 ZNF316A6NFI3 1004 aaPredicted RBP19.05■□□□□ 0.64
SMG8-202ENST00000543872 MIER1Q8N108 512 aa19.01■□□□□ 0.63
SMG8-202ENST00000543872 RSF1Q96T23 1441 aaPredicted RBP18.81■□□□□ 0.6
SMG8-202ENST00000543872 ANP32EQ9BTT0 268 aa18.8■□□□□ 0.6
SMG8-202ENST00000543872 RB1CC1Q8TDY2 1594 aa18.72■□□□□ 0.59
SMG8-202ENST00000543872 SUPT16HQ9Y5B9 1047 aaKnown RBP18.72■□□□□ 0.59
SMG8-202ENST00000543872 CSRNP3Q8WYN3 585 aa18.7■□□□□ 0.58
SMG8-202ENST00000543872 HNRNPUL2Q1KMD3 747 aaKnown RBP18.68■□□□□ 0.58
SMG8-202ENST00000543872 ABCC9O60706 1549 aa18.67■□□□□ 0.58
SMG8-202ENST00000543872 TSHZ2Q9NRE2 1034 aa18.67■□□□□ 0.58
SMG8-202ENST00000543872 BCANQ96GW7 911 aa18.54■□□□□ 0.56
SMG8-202ENST00000543872 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
SMG8-202ENST00000543872 CEP162Q5TB80 1403 aa18.46■□□□□ 0.55
SMG8-202ENST00000543872 CLSPNQ9HAW4 1339 aa18.46■□□□□ 0.55
SMG8-202ENST00000543872 ERICH6Q7L0X2 663 aa18.45■□□□□ 0.54
SMG8-202ENST00000543872 SCRIBQ14160 1630 aa18.44■□□□□ 0.54
SMG8-202ENST00000543872 WRNQ14191 1432 aaPredicted RBP eCLIP18.41■□□□□ 0.54
SMG8-202ENST00000543872 FKBP8Q14318 412 aa18.32■□□□□ 0.52
SMG8-202ENST00000543872 KCNH8Q96L42 1107 aa18.29■□□□□ 0.52
SMG8-202ENST00000543872 CECR2Q9BXF3 1484 aa18.29■□□□□ 0.52
SMG8-202ENST00000543872 APLP2Q06481 763 aa18.28■□□□□ 0.52
SMG8-202ENST00000543872 RANGAP1P46060 587 aaPredicted RBP18.27■□□□□ 0.52
SMG8-202ENST00000543872 TNIKQ9UKE5 1360 aa18.26■□□□□ 0.51
SMG8-202ENST00000543872 RBM19Q9Y4C8 960 aaKnown RBP18.25■□□□□ 0.51
SMG8-202ENST00000543872 SOGA1O94964 1423 aa18.23■□□□□ 0.51
SMG8-202ENST00000543872 CCDC88BA6NC98 1476 aa18.22■□□□□ 0.51
SMG8-202ENST00000543872 ITGAEP38570 1179 aa18.22■□□□□ 0.51
SMG8-202ENST00000543872 MROH2BQ7Z745 1585 aa18.2■□□□□ 0.5
SMG8-202ENST00000543872 ABCC8Q09428 1581 aa18.17■□□□□ 0.5
SMG8-202ENST00000543872 NEFLP07196 543 aa18.15■□□□□ 0.5
SMG8-202ENST00000543872 WIZO95785 1651 aa18.13■□□□□ 0.49
SMG8-202ENST00000543872 RUSC2Q8N2Y8 1516 aa18.11■□□□□ 0.49
SMG8-202ENST00000543872 ANO8Q9HCE9 1232 aaPredicted RBP18.09■□□□□ 0.49
SMG8-202ENST00000543872 MSH5O43196 834 aa18.07■□□□□ 0.48
SMG8-202ENST00000543872 TRIM52Q96A61 297 aa18.03■□□□□ 0.48
SMG8-202ENST00000543872 DHX57Q6P158 1386 aaKnown RBP18.02■□□□□ 0.47
SMG8-202ENST00000543872 DDX10Q13206 875 aaKnown RBP18.02■□□□□ 0.47
SMG8-202ENST00000543872 GOLGA3Q08378 1498 aa18■□□□□ 0.47
SMG8-202ENST00000543872 CLIP1P30622 1438 aa17.97■□□□□ 0.47
SMG8-202ENST00000543872 EEA1Q15075 1411 aa17.91■□□□□ 0.46
SMG8-202ENST00000543872 IRX6P78412 446 aaPredicted RBP17.9■□□□□ 0.46
SMG8-202ENST00000543872 EIF4G1Q04637 1599 aaKnown RBP17.9■□□□□ 0.46
SMG8-202ENST00000543872 HIRIP3Q9BW71 556 aaPredicted RBP17.89■□□□□ 0.45
SMG8-202ENST00000543872 VPS8Q8N3P4 1428 aa17.87■□□□□ 0.45
SMG8-202ENST00000543872 CDK11AQ9UQ88 783 aaPredicted RBP17.86■□□□□ 0.45
SMG8-202ENST00000543872 DEKP35659 375 aaKnown RBP17.85■□□□□ 0.45
SMG8-202ENST00000543872 BAZ1AQ9NRL2 1556 aaPredicted RBP17.84■□□□□ 0.45
SMG8-202ENST00000543872 SALL2Q9Y467 1007 aaPredicted RBP17.82■□□□□ 0.44
SMG8-202ENST00000543872 CCDC136Q96JN2 1154 aa17.81■□□□□ 0.44
SMG8-202ENST00000543872 KANK4Q5T7N3 995 aaPredicted RBP17.8■□□□□ 0.44
SMG8-202ENST00000543872 FANCIQ9NVI1 1328 aa17.79■□□□□ 0.44
SMG8-202ENST00000543872 CEP164Q9UPV0 1460 aa17.77■□□□□ 0.44
SMG8-202ENST00000543872 ANP32CO43423 234 aa17.77■□□□□ 0.44
SMG8-202ENST00000543872 NBR1Q14596 966 aa17.75■□□□□ 0.43
SMG8-202ENST00000543872 SIN3AQ96ST3 1273 aa17.73■□□□□ 0.43
SMG8-202ENST00000543872 HNRNPUQ00839 825 aaKnown RBP eCLIP17.68■□□□□ 0.42
SMG8-202ENST00000543872 PPP1R15AO75807 674 aaPredicted RBP17.68■□□□□ 0.42
SMG8-202ENST00000543872 NACADO15069 1562 aa17.67■□□□□ 0.42
SMG8-202ENST00000543872 MYT1LQ9UL68 1186 aa17.67■□□□□ 0.42
SMG8-202ENST00000543872 RAPGEF2Q9Y4G8 1499 aa17.67■□□□□ 0.42
SMG8-202ENST00000543872 TOP2AP11388 1531 aaKnown RBP17.65■□□□□ 0.42
SMG8-202ENST00000543872 SMARCA2P51531 1590 aa17.65■□□□□ 0.42
SMG8-202ENST00000543872 CCER2I3L3R5 266 aa17.65■□□□□ 0.42
SMG8-202ENST00000543872 KIF21BO75037 1637 aa17.64■□□□□ 0.41
SMG8-202ENST00000543872 UBE2Q2Q8WVN8 375 aa17.62■□□□□ 0.41
SMG8-202ENST00000543872 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.59■□□□□ 0.41
SMG8-202ENST00000543872 RAB3GAP2Q9H2M9 1393 aa17.59■□□□□ 0.41
SMG8-202ENST00000543872 B4GALNT3Q6L9W6 998 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms